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Volumn 5, Issue 1, 2012, Pages

GAMETES: A fast, direct algorithm for generating pure, strict, epistatic models with random architectures

Author keywords

Epistasis; GAMETES; Genetics; Model; Simulation; SNP

Indexed keywords

ACCURACY; ARTICLE; COMPUTER PROGRAM; GENE FREQUENCY; GENETIC ALGORITHM; GENETIC ARCHITECTURE MODEL EMULATOR FOR TESTING AND EVALUATING SOFTWARE; GENETIC EPISTASIS; GENETIC MODEL; HERITABILITY; HUMAN; PRIORITY JOURNAL; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84866792294     PISSN: None     EISSN: 17560381     Source Type: Journal    
DOI: 10.1186/1756-0381-5-16     Document Type: Article
Times cited : (191)

References (31)
  • 1
    • 34347408099 scopus 로고    scopus 로고
    • Problems with genome-wide association studies
    • 10.1126/science.316.5833.1840c
    • Problems with genome-wide association studies. Shriner D, Vaughan L, Padilla M, et al. Science 2007 316 5833 1840c 10.1126/science.316.5833.1840c
    • (2007) Science , vol.316 , Issue.5833
    • Shriner, D.1    Vaughan, L.2    Padilla, M.3
  • 2
    • 77952557918 scopus 로고    scopus 로고
    • Missing heritability and strategies for finding the underlying causes of complex disease
    • 10.1038/nrg2809 20479774
    • Missing heritability and strategies for finding the underlying causes of complex disease. Eichler E, Flint J, Gibson G, Kong A, Leal S, Moore J, Nadeau J, Nat Rev Genet 2010 11 6 446 450 10.1038/nrg2809 20479774
    • (2010) Nat Rev Genet , vol.11 , Issue.6 , pp. 446-450
    • Eichler, E.1    Flint, J.2    Gibson, G.3    Kong, A.4    Leal, S.5    Moore, J.6    Nadeau, J.7
  • 3
    • 7444257916 scopus 로고    scopus 로고
    • Genetics, statistics and human disease: Analytical retooling for complexity
    • DOI 10.1016/j.tig.2004.09.007, PII S0168952504002744
    • Genetics, statistics and human disease: analytical retooling for complexity. Thornton-Wells T, Moore J, Haines J, TRENDS in Genetics 2004 20 12 640 647 10.1016/j.tig.2004.09.007 15522460 (Pubitemid 39441283)
    • (2004) Trends in Genetics , vol.20 , Issue.12 , pp. 640-647
    • Thornton-Wells, T.A.1    Moore, J.H.2    Haines, J.L.3
  • 5
    • 84971185409 scopus 로고
    • The Correlation between Relatives on the Supposition of Mendelian Inheritance
    • The Correlation Between Relatives on the Supposition of Mendelian Inheritance. Fisher R, Trans R Soc of Edinburgh 1918 52 399 433
    • (1918) Trans R Soc of Edinburgh , vol.52 , pp. 399-433
    • Fisher, R.1
  • 6
    • 0036797562 scopus 로고    scopus 로고
    • Epistasis: What it means, what it doesn't mean, and statistical methods to detect it in humans
    • 10.1093/hmg/11.20.2463
    • Epistasis: what it means, what it doesn't mean, and statistical methods to detect it in humans. Cordell H, Human Mol Genet 2002 11 20 2463 10.1093/hmg/11.20.2463
    • (2002) Human Mol Genet , vol.11 , Issue.20 , pp. 2463
    • Cordell, H.1
  • 7
    • 33744937046 scopus 로고    scopus 로고
    • Machine learning for detecting gene-gene interactions: A review
    • DOI 10.2165/00822942-200605020-00002
    • Machine learning for detecting gene-gene interactions: a review. McKinney B, Reif D, Ritchie M, Moore J, Appl Bioinf 2006 5 2 77 88 10.2165/00822942- 200605020-00002 (Pubitemid 43846017)
    • (2006) Applied Bioinformatics , vol.5 , Issue.2 , pp. 77-88
    • McKinney, B.A.1    Reif, D.M.2    Ritchie, M.D.3    Moore, J.H.4
  • 8
    • 67349166946 scopus 로고    scopus 로고
    • Detecting gene-gene interactions that underlie human diseases
    • 19434077
    • Detecting gene-gene interactions that underlie human diseases. Cordell H, Nat Rev Genet 2009 10 6 392 404 19434077
    • (2009) Nat Rev Genet , vol.10 , Issue.6 , pp. 392-404
    • Cordell, H.1
  • 9
    • 77949497074 scopus 로고    scopus 로고
    • Bioinformatics challenges for genome-wide association studies
    • 10.1093/bioinformatics/btp713 20053841
    • Bioinformatics challenges for genome-wide association studies. Moore J, Asselbergs F, Williams S, Bioinformatics 2010 26 4 445 10.1093/bioinformatics/ btp713 20053841
    • (2010) Bioinformatics , vol.26 , Issue.4 , pp. 445
    • Moore, J.1    Asselbergs, F.2    Williams, S.3
  • 10
    • 0033879555 scopus 로고    scopus 로고
    • The use of a genetic algorithm for simultaneous mapping of multiple interacting quantitative trait loci
    • The use of a genetic algorithm for simultaneous mapping of multiple interacting quantitative trait loci. Carlborg O, Andersson L, Kinghorn B, Genetics 2003 155 4 2000
    • (2003) Genetics , vol.155 , Issue.4 , pp. 2000
    • Carlborg, O.1    Andersson, L.2    Kinghorn, B.3
  • 11
    • 0024602536 scopus 로고
    • Estimating the power of a proposed linkage study for a complex genetic trait
    • Estimating the power of a proposed linkage study for a complex genetic trait. Ploughman L, Boehnke M, Am J Human Genet 1989 44 4 543
    • (1989) Am J Human Genet , vol.44 , Issue.4 , pp. 543
    • Ploughman, L.1    Boehnke, M.2
  • 12
    • 0000801438 scopus 로고
    • SLINK: A general simulation program for linkage analysis
    • SLINK: a general simulation program for linkage analysis. Weeks D, Ott J, Lathrop G, Am J Hum Genet 1990 47 3 204
    • (1990) Am J Hum Genet , vol.47 , Issue.3 , pp. 1204
    • Weeks, D.1    Ott, J.2    Lathrop, G.3
  • 13
    • 2442709349 scopus 로고    scopus 로고
    • Pedigree generation for analysis of genetic linkage and association
    • World Scientific Pub Co Inc, USA
    • Pedigree generation for analysis of genetic linkage and association. Bass M, Martin E, Mauser E, Pacific Symposium on Biocomputing Hawaii World Scientific Pub Co Inc, USA 2004 93 93
    • (2004) Pacific Symposium on Biocomputing Hawaii , pp. 93-93
    • Bass, M.1    Martin, E.2    Mauser, E.3
  • 14
    • 23044449472 scopus 로고    scopus 로고
    • Extension of the SIMLA package for generating pedigrees with complex inheritance patterns: Environmental covariates, gene-gene and gene-environment interaction
    • Extension of the SIMLA package for generating pedigrees with complex inheritance patterns: environmental covariates, gene-gene and gene-environment interaction. Schmidt M, Hauser E, Martin E, Schmidt S, Stat App Genet and Mol Biol 2005 4 1133
    • (2005) Stat App Genet and Mol Biol , vol.4 , pp. 1133
    • Schmidt, M.1    Hauser, E.2    Martin, E.3    Schmidt, S.4
  • 15
    • 33746861136 scopus 로고    scopus 로고
    • SUP: An extension to SLINK to allow a larger number of marker loci to be simulated in pedigrees conditional on trait values
    • 16803631
    • SUP: an extension to SLINK to allow a larger number of marker loci to be simulated in pedigrees conditional on trait values. Lemire M, BMC Genet 2006 7 40 16803631
    • (2006) BMC Genet , vol.7 , pp. 40
    • Lemire, M.1
  • 16
    • 4243639095 scopus 로고    scopus 로고
    • Simulation of LD block-structured SNP haplotype data and its use for the analysis of case-control data by supervised learning methods
    • Simulation of LD block-structured SNP haplotype data and its use for the analysis of case-control data by supervised learning methods. Nothnagel M, Am J Hum Genet 2002 71 suppl 4 2363
    • (2002) Am J Hum Genet , vol.71 , Issue.SUPPL. 4 , pp. 12363
    • Nothnagel, M.1
  • 18
    • 2442432588 scopus 로고    scopus 로고
    • Routine discovery of complex genetic models using genetic algorithms
    • DOI 10.1016/j.asoc.2003.08.003, PII S1568494603000528
    • Routine discovery of complex genetic models using genetic algorithms. Moore J, Hahn L, Ritchie M, Thornton T, White B, Appl Soft Comput 2004 4 79 86 10.1016/j.asoc.2003.08.003 20948983 (Pubitemid 38638260)
    • (2004) Applied Soft Computing Journal , vol.4 , Issue.1 , pp. 79-86
    • Moore, J.H.1    Hahn, L.W.2    Ritchie, M.D.3    Thornton, T.A.4    White, B.C.5
  • 21
    • 37549033488 scopus 로고    scopus 로고
    • GWAsimulator: A rapid whole-genome simulation program
    • 10.1093/bioinformatics/btm549 18006546
    • GWAsimulator: a rapid whole-genome simulation program. Li C, Li M, Bioinformatics 2008 24 140 10.1093/bioinformatics/btm549 18006546
    • (2008) Bioinformatics , vol.24 , pp. 140
    • Li, C.1    Li, M.2
  • 22
    • 41049102190 scopus 로고    scopus 로고
    • Generating samples for association studies based on HapMap data
    • DOI 10.1186/1471-2105-9-44
    • Generating samples for association studies based on HapMap data. Li J, Chen Y, BMC Bioinf 2008 9 44 10.1186/1471-2105-9-44 (Pubitemid 351420408)
    • (2008) BMC Bioinformatics , vol.9 , pp. 44
    • Li, J.1    Chen, Y.2
  • 23
    • 77952307541 scopus 로고    scopus 로고
    • A Model Free Method to Generate Human Genetics Datasets with Complex Gene-Disease Relationships
    • 10.1007/978-3-642-12211-8-7
    • A Model Free Method to Generate Human Genetics Datasets with Complex Gene-Disease Relationships. Greene C, Himmelstein D, Moore J, Evol Comput, Machine Learning and Data Mining in Bioinformatics 2010 6023 74 85 10.1007/978-3-642-12211-8-7
    • (2010) Evol Comput, Machine Learning and Data Mining in Bioinformatics , vol.6023 , pp. 74-85
    • Greene, C.1    Himmelstein, D.2    Moore, J.3
  • 24
    • 0033940280 scopus 로고    scopus 로고
    • A complete enumeration and classification of two-locus disease models
    • A Complete Enumeration and Classification of Two-Locus Disease Models. Li W, Reich J, Human Heredity 2000 50 6 334 349 10.1159/000022939 10899752 (Pubitemid 30481329)
    • (2000) Human Heredity , vol.50 , Issue.6 , pp. 334-349
    • Li, W.1    Reich, J.2
  • 25
    • 41949132217 scopus 로고    scopus 로고
    • A complete classification of epistatic two-locus models
    • 18284682
    • A complete classification of epistatic two-locus models. Hallgrímsdóttir I, Yuster D, BMC Genet 2008 9 17 18284682
    • (2008) BMC Genet , vol.9 , pp. 17
    • Hallgrímsdóttir, I.1    Yuster, D.2
  • 26
    • 0036155238 scopus 로고    scopus 로고
    • A perspective on epistasis: Limits of models displaying no main effect
    • DOI 10.1086/338759
    • A perspective on epistasis: limits of models displaying no main effect. Culverhouse R, Suarez B, Lin J, Reich T, Am J Human Genet 2002 70 2 461 471 10.1086/338759 (Pubitemid 34112299)
    • (2002) American Journal of Human Genetics , vol.70 , Issue.2 , pp. 461-471
    • Culverhouse, R.1    Suarez, B.K.2    Lin, J.3    Reich, T.4
  • 28
    • 0034973569 scopus 로고    scopus 로고
    • Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer
    • DOI 10.1086/321276
    • Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer. Ritchie M, Hahn L, Roodi N, Bailey L, Dupont W, Parl F, Moore J, Am J Human Genet 2001 69 138 147 10.1086/321276 (Pubitemid 32614026)
    • (2001) American Journal of Human Genetics , vol.69 , Issue.1 , pp. 138-147
    • Ritchie, M.D.1    Hahn, L.W.2    Roodi, N.3    Bailey, L.R.4    Dupont, W.D.5    Parl, F.F.6    Moore, J.H.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.