Crystallization, dehydration and experimental phasing of WbdD, a bifunctional kinase and methyltransferase from Escherichia coli O9a

Acta Crystallographica Section D: Biological Crystallography

Volumn 68, Issue 10, 2012, Pages 1371-1379

  Hagelueken, Gregor ^a   Huang, Hexian ^a   Harlos, Karl ^b   Clarke, Bradley R ^c   Whitfield, Chris ^c   Naismith, James H ^a  

^a UNIVERSITY OF ST ANDREWS   (United Kingdom)

^b UNIVERSITY OF OXFORD   (United Kingdom)

^c UNIVERSITY OF GUELPH   (Canada)

Author keywords

crystal dehydration; WbdD

Indexed keywords

ESCHERICHIA COLI PROTEIN; METHYLTRANSFERASE; MULTIENZYME COMPLEX; PHOSPHOTRANSFERASE;

ARTICLE; CHEMISTRY; CRYSTALLIZATION; DEHYDRATION; ENZYMOLOGY; ESCHERICHIA COLI; METABOLISM; X RAY DIFFRACTION;

CRYSTALLIZATION; DEHYDRATION; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; METHYLTRANSFERASES; MULTIENZYME COMPLEXES; PHOSPHOTRANSFERASES (ALCOHOL GROUP ACCEPTOR); X-RAY DIFFRACTION;

ESCHERICHIA COLI;

EID: 84866662372     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444912029599     Document Type: Article

References (32)

1. Adams, P. D., Grosse-Kunstleve, R. W., Hung, L.-W., Ioerger, T. R., McCoy, A. J., Moriarty, N. W., Read, R. J., Sacchettini, J. C., Sauter, N. K. & Terwilliger, T. C. (2002). Acta Cryst. D58, 1948-1954.
2. Chen, V. B., Arendall, W. B., Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S. & Richardson, D. C. (2010). Acta Cryst. D66, 12-21.
3. Chotiyarnwong, P., Stewart-Jones, G. B., Tarry, M., Dejnirattisai, W., Siebold, C., Koch, M., Stuart, D. I., Harlos, K., Malasit, P., Screaton, G., Mongkolsapaya, J. & Jones, E. Y. (2007). Acta Cryst. F63, 386-392.
4. Clarke, B. R., Cuthbertson, L. & Whitfield, C. (2004). J. Biol. Chem. 279, 35709-35718.
5. Clarke, B. R., Greenfield, L. K., Bouwman, C. & Whitfield, C. (2009). J. Biol. Chem. 284, 30662-30672.
6. Clarke, B. R., Richards, M. R., Greenfield, L. K., Hou, D., Lowary, T. L. & Whitfield, C. (2011). J. Biol. Chem. 286, 41391-41401.
7. Cowtan, K. (2010). Acta Cryst. D66, 470-478.
8. Cuthbertson, L., Kos, V. & Whitfield, C. (2010). Microbiol. Mol. Biol. Rev. 74, 341-362.
9. Dong, A. et al. (2007). Nature Methods, 4, 1019-1021.
10. Esnouf, R. M., Ren, J., Garman, E. F., Somers, D. O'N., Ross, C. K., Jones, E. Y., Stammers, D. K. & Stuart, D. I. (1998). Acta Cryst. D54, 938-953.
11. Grosse-Kunstleve, R. W. & Adams, P. D. (2003). Acta Cryst. D59, 1966-1973.
12. Heras, B. & Martin, J. L. (2005). Acta Cryst. D61, 1173-1180.
13. Holm, L. & Rosenström, P. (2010). Nucleic Acids Res. 38, W545-W549.
14. Izumi, K., Nakamura, S., Nakano, H., Shimura, K., Sakagami, Y., Oishi, S., Uchiyama, S., Ohkubo, T., Kobayashi, Y., Fujii, N., Matsuoka, M. & Kodama, E. N. (2010). Antiviral Res. 87, 179-186.
15. Kiefersauer, R., Than, M. E., Dobbek, H., Gremer, L., Melero, M., Strobl, S., Dias, J. M., Soulimane, T. & Huber, R. (2000). J. Appl. Cryst. 33, 1223-1230.
16. Krissinel, E. & Henrick, K. (2004). Acta Cryst. D60, 2256-2268.
17. Krissinel, E. & Henrick, K. (2007). J. Mol. Biol. 372, 774-797.
18. McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C. & Read, R. J. (2007). J. Appl. Cryst. 40, 658-674.
19. Mosca, R., Brannetti, B. & Schneider, T. R. (2008). BMC Bioinformatics, 9, 352.
20. Mosca, R. & Schneider, T. R. (2008). Nucleic Acids Res. 36, W42-W46.
21. Oke, M. et al. (2010). J. Struct. Funct. Genomics, 11, 167-180.
22. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
23. Raimondo, D., Andreotti, G., Saint, N., Amodeo, P., Renzone, G., Sanseverino, M., Zocchi, I., Molle, G., Motta, A. & Scaloni, A. (2005). Proc. Natl. Acad. Sci. USA, 102, 6309-6314.
24. Sanders, D. A. R., McMahon, S. A., Leonard, G. L. & Naismith, J. H. (2001). Acta Cryst. D57, 1415-1420.
25. Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.
26. Slabinski, L., Jaroszewski, L., Rychlewski, L., Wilson, I. A., Lesley, S. A. & Godzik, A. (2007). Bioinformatics, 23, 3403-3405.
27. Terwilliger, T. C. (2003). Methods Enzymol. 374, 22-37.
28. Wernimont, A. & Edwards, A. (2009). PLoS One, 4, e5094.
29. Winter, G. (2010). J. Appl. Cryst. 43, 186-190.
30. Winn, M. D. et al. (2011). Acta Cryst. D67, 235-242.
31. Zwart, P. H. (2005). Acta Cryst. D61, 1437-1448.
32. Zwart, P. H., Afonine, P. V., Grosse-Kunstleve, R. W., Hung, L.-W., Ioerger, T. R., McCoy, A. J., McKee, E., Moriarty, N. W., Read, R. J., Sacchettini, J. C., Sauter, N. K., Storoni, L. C., Terwilliger, T. C. & Adams, P. D. (2008). Methods Mol. Biol. 426, 419-435.