-
1
-
-
3242889975
-
Replacing suffix trees with enhanced suffix arrays
-
Abouelhoda, M.I., Kurtz, S., Ohlebusch, E.: Replacing suffix trees with enhanced suffix arrays. Journal of Discrete Algorithms 2(1), 53-86 (2004)
-
(2004)
Journal of Discrete Algorithms
, vol.2
, Issue.1
, pp. 53-86
-
-
Abouelhoda, M.I.1
Kurtz, S.2
Ohlebusch, E.3
-
2
-
-
79960099867
-
Lightweight BWT Construction for Very Large String Collections
-
Giancarlo, R., Manzini, G. (eds.) CPM 2011. Springer, Heidelberg
-
Bauer, M.J., Cox, A.J., Rosone, G.: Lightweight BWT Construction for Very Large String Collections. In: Giancarlo, R., Manzini, G. (eds.) CPM 2011. LNCS, vol. 6661, pp. 219-231. Springer, Heidelberg (2011)
-
(2011)
LNCS
, vol.6661
, pp. 219-231
-
-
Bauer, M.J.1
Cox, A.J.2
Rosone, G.3
-
3
-
-
84876410333
-
Lightweight algorithms for constructing and inverting the bwt of string collections
-
in press
-
Bauer, M.J., Cox, A.J., Rosone, G.: Lightweight algorithms for constructing and inverting the bwt of string collections. Theor. Comput. Sci. (in press, 2012)
-
(2012)
Theor. Comput. Sci.
-
-
Bauer, M.J.1
Cox, A.J.2
Rosone, G.3
-
4
-
-
84872102147
-
Computing the longest common prefix array based on the Burrows-Wheeler transform
-
(to appear)
-
Beller, T., Gog, S., Ohlebusch, E., Schnattinger, T.: Computing the longest common prefix array based on the Burrows-Wheeler transform. Journal of Discrete Algorithms (to appear)
-
Journal of Discrete Algorithms
-
-
Beller, T.1
Gog, S.2
Ohlebusch, E.3
Schnattinger, T.4
-
5
-
-
80053977532
-
Computing the Longest Common Prefix Array Based on the Burrows-Wheeler Transform
-
Grossi, R., Sebastiani, F., Silvestri, F. (eds.) SPIRE 2011. Springer, Heidelberg
-
Beller, T., Gog, S., Ohlebusch, E., Schnattinger, T.: Computing the Longest Common Prefix Array Based on the Burrows-Wheeler Transform. In: Grossi, R., Sebastiani, F., Silvestri, F. (eds.) SPIRE 2011. LNCS, vol. 7024, pp. 197-208. Springer, Heidelberg (2011)
-
(2011)
LNCS
, vol.7024
, pp. 197-208
-
-
Beller, T.1
Gog, S.2
Ohlebusch, E.3
Schnattinger, T.4
-
6
-
-
77953507125
-
Lightweight Data Indexing and Compression in External Memory
-
López-Ortiz, A. (ed.) LATIN 2010. Springer, Heidelberg
-
Ferragina, P., Gagie, T., Manzini, G.: Lightweight Data Indexing and Compression in External Memory. In: López-Ortiz, A. (ed.) LATIN 2010. LNCS, vol. 6034, pp. 697-710. Springer, Heidelberg (2010)
-
(2010)
LNCS
, vol.6034
, pp. 697-710
-
-
Ferragina, P.1
Gagie, T.2
Manzini, G.3
-
7
-
-
80052119114
-
Inducing the LCP-Array
-
Dehne, F., Iacono, J., Sack, J.-R. (eds.) WADS 2011. Springer, Heidelberg
-
Fischer, J.: Inducing the LCP-Array. In: Dehne, F., Iacono, J., Sack, J.-R. (eds.) WADS 2011. LNCS, vol. 6844, pp. 374-385. Springer, Heidelberg (2011)
-
(2011)
LNCS
, vol.6844
, pp. 374-385
-
-
Fischer, J.1
-
8
-
-
84872663439
-
-
National Center for Biotechnology Information. Sequence Read Archive, http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?
-
Sequence Read Archive
-
-
-
9
-
-
80052130463
-
Fast and Lightweight LCP-Array Construction Algorithms
-
SIAM
-
Gog, S., Ohlebusch, E.: Fast and Lightweight LCP-Array Construction Algorithms. In: ALENEX, pp. 25-34. SIAM (2011)
-
(2011)
ALENEX
, pp. 25-34
-
-
Gog, S.1
Ohlebusch, E.2
-
10
-
-
42549097341
-
Efficient computation of absent words in genomic sequences
-
Herold, J., Kurtz, S., Giegerich, R.: Efficient computation of absent words in genomic sequences. BMC Bioinformatics 9(1), 167 (2008)
-
(2008)
BMC Bioinformatics
, vol.9
, Issue.1
, pp. 167
-
-
Herold, J.1
Kurtz, S.2
Giegerich, R.3
-
11
-
-
70350648554
-
Permuted Longest-Common-Prefix Array
-
Kucherov, G., Ukkonen, E. (eds.) CPM 2009 Lille. Springer, Heidelberg
-
Kärkkäinen, J., Manzini, G., Puglisi, S.J.: Permuted Longest-Common-Prefix Array. In: Kucherov, G., Ukkonen, E. (eds.) CPM 2009 Lille. LNCS, vol. 5577, pp. 181-192. Springer, Heidelberg (2009)
-
(2009)
LNCS
, vol.5577
, pp. 181-192
-
-
Kärkkäinen, J.1
Manzini, G.2
Puglisi, S.J.3
-
12
-
-
84876814776
-
An extension of the Burrows- Wheeler Transform
-
Mantaci, S., Restivo, A., Rosone, G., Sciortino, M.: An extension of the Burrows- Wheeler Transform. Theor. Comput. Sci. 387(3), 298-312 (2007)
-
(2007)
Theor. Comput. Sci.
, vol.387
, Issue.3
, pp. 298-312
-
-
Mantaci, S.1
Restivo, A.2
Rosone, G.3
Sciortino, M.4
-
13
-
-
38949189971
-
A new combinatorial approach to sequence comparison
-
Mantaci, S., Restivo, A., Rosone, G., Sciortino, M.: A new combinatorial approach to sequence comparison. Theory Comput. Syst. 42(3), 411-429 (2008)
-
(2008)
Theory Comput. Syst.
, vol.42
, Issue.3
, pp. 411-429
-
-
Mantaci, S.1
Restivo, A.2
Rosone, G.3
Sciortino, M.4
-
14
-
-
78449271699
-
Computing Matching Statistics and Maximal Exact Matches on Compressed Full-Text Indexes
-
Chavez, E., Lonardi, S. (eds.) SPIRE 2010. Springer, Heidelberg
-
Ohlebusch, E., Gog, S., Kügel, A.: Computing Matching Statistics and Maximal Exact Matches on Compressed Full-Text Indexes. In: Chavez, E., Lonardi, S. (eds.) SPIRE 2010. LNCS, vol. 6393, pp. 347-358. Springer, Heidelberg (2010)
-
(2010)
LNCS
, vol.6393
, pp. 347-358
-
-
Ohlebusch, E.1
Gog, S.2
Kügel, A.3
-
15
-
-
58549114255
-
Space-Time Tradeoffs for Longest-Common-Prefix Array Computation
-
Hong, S.-H., Nagamochi, H., Fukunaga, T. (eds.) ISAAC 2008. Springer, Heidelberg
-
Puglisi, S., Turpin, A.: Space-Time Tradeoffs for Longest-Common-Prefix Array Computation. In: Hong, S.-H., Nagamochi, H., Fukunaga, T. (eds.) ISAAC 2008. LNCS, vol. 5369, pp. 124-135. Springer, Heidelberg (2008)
-
(2008)
LNCS
, vol.5369
, pp. 124-135
-
-
Puglisi, S.1
Turpin, A.2
-
16
-
-
34250183733
-
Compressed suffix trees with full functionality
-
Sadakane, K.: Compressed suffix trees with full functionality. Theor. Comp. Sys. 41(4), 589-607 (2007)
-
(2007)
Theor. Comp. Sys.
, vol.41
, Issue.4
, pp. 589-607
-
-
Sadakane, K.1
-
17
-
-
84947933960
-
Suffix Arrays for Multiple Strings: A Method for On-line Multiple String Searches
-
Jaffar, J., Yap, R.H.C. (eds.) ASIAN 1996. Springer, Heidelberg
-
Shi, F.: Suffix Arrays for Multiple Strings: A Method for On-line Multiple String Searches. In: Jaffar, J., Yap, R.H.C. (eds.) ASIAN 1996. LNCS, vol. 1179, pp. 11-22. Springer, Heidelberg (1996)
-
(1996)
LNCS
, vol.1179
, pp. 11-22
-
-
Shi, F.1
|