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Volumn 7534 LNBI, Issue , 2012, Pages 249-261

From de Bruijn graphs to rectangle graphs for genome assembly

Author keywords

[No Author keywords available]

Indexed keywords

ASSEMBLY ALGORITHM; BACTERIAL GENOMES; DE BRUIJN GRAPHS; GENOME ASSEMBLY; JIGSAW PUZZLES; NP COMPLETE; SINGLE CELLS;

EID: 84866643142     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-33122-0_20     Document Type: Conference Paper
Times cited : (9)

References (13)
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    • Short read fragment assembly of bacterial genomes
    • Chaisson, M.J., Pevzner, P.A.: Short read fragment assembly of bacterial genomes. Genome Research 18(2), 324 (2008)
    • (2008) Genome Research , vol.18 , Issue.2 , pp. 324
    • Chaisson, M.J.1    Pevzner, P.A.2
  • 5
    • 80054732674 scopus 로고    scopus 로고
    • Efficient de novo assembly of single-cell bacterial genomes from short-read data sets
    • Chitsaz, H., Yee-Greenbaum, J.L., Tesler, G., et al.: Efficient de novo assembly of single-cell bacterial genomes from short-read data sets. Nat. Biotechnol. 29(10), 915-921 (2011)
    • (2011) Nat. Biotechnol. , vol.29 , Issue.10 , pp. 915-921
    • Chitsaz, H.1    Yee-Greenbaum, J.L.2    Tesler, G.3
  • 6
    • 34547295064 scopus 로고    scopus 로고
    • Jigsaw puzzles, edge matching, and polyomino packing: Connections and complexity
    • Demaine, E.D., Demaine, M.L.: Jigsaw puzzles, edge matching, and polyomino packing: Connections and complexity. Graphs and Combinatorics 23, 195-208 (2007)
    • (2007) Graphs and Combinatorics , vol.23 , pp. 195-208
    • Demaine, E.D.1    Demaine, M.L.2
  • 8
    • 60749107622 scopus 로고    scopus 로고
    • 3d puzzling of archeological fragments
    • Slovenian Pattern Recognition Society
    • Kampel, M., Sablatnig, R.: 3d puzzling of archeological fragments. In: Proc. of 9th Computer Vision Winter Workshop, vol. 2. Slovenian Pattern Recognition Society (2004)
    • (2004) Proc. of 9th Computer Vision Winter Workshop , vol.2
    • Kampel, M.1    Sablatnig, R.2
  • 10
    • 80955139667 scopus 로고    scopus 로고
    • Paired de bruijn graphs: A novel approach for incorporating mate pair information into genome assemblers
    • Medvedev, P., Pham, S., Chaisson, M., Tesler, G., Pevzner, P.: Paired de bruijn graphs: A novel approach for incorporating mate pair information into genome assemblers. Journal of Computational Biology, 1625-1634 (2011)
    • (2011) Journal of Computational Biology , pp. 1625-1634
    • Medvedev, P.1    Pham, S.2    Chaisson, M.3    Tesler, G.4    Pevzner, P.5
  • 11
    • 0035232164 scopus 로고    scopus 로고
    • Fragment assembly with double-barreled data
    • Pevzner, P.A., Tang, H.: Fragment assembly with double-barreled data. Bioinformatics 17(suppl. 1), S225 (2001)
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1
    • Pevzner, P.A.1    Tang, H.2
  • 12
    • 84860808270 scopus 로고    scopus 로고
    • Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly
    • Chor, B. (ed.) RECOMB 2012. Springer, Heidelberg
    • Pham, S.K., Antipov, D., Sirotkin, A., Tesler, G., Pevzner, P.A., Alekseyev, M.A.: Pathset Graphs: A Novel Approach for Comprehensive Utilization of Paired Reads in Genome Assembly. In: Chor, B. (ed.) RECOMB 2012. LNCS, vol. 7262, pp. 200-212. Springer, Heidelberg (2012)
    • (2012) LNCS , vol.7262 , pp. 200-212
    • Pham, S.K.1    Antipov, D.2    Sirotkin, A.3    Tesler, G.4    Pevzner, P.A.5    Alekseyev, M.A.6
  • 13
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    • Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino, D.R., Birney, E.: Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research 18(5), 821 (2008)
    • (2008) Genome Research , vol.18 , Issue.5 , pp. 821
    • Zerbino, D.R.1    Birney, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.