Comparative analysis of two glyceraldehyde-3-phosphate dehydrogenases from a thermoacidophilic archaeon, Sulfolobus tokodaii

FEBS Letters

Volumn 586, Issue 19, 2012, Pages 3097-3103

  Ito, Fumiaki ^a   Chishiki, Hidehiro ^a   Fushinobu, Shinya ^a   Wakagi, Takayoshi ^a  

^a UNIVERSITY OF TOKYO   (Japan)

Author keywords

Allosteric enzyme; Archaea; Glyceraldehyde 3 phosphate dehydrogenase

Indexed keywords

1,3 DIPHOSPHOGLYCERIC ACID; GLUCOSE 1 PHOSPHATE; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; NICOTINAMIDE ADENINE DINUCLEOTIDE; NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE; RECOMBINANT ENZYME; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE; SUGAR PHOSPHATE; UNCLASSIFIED DRUG;

ALLOSTERISM; ARTICLE; CATALYSIS; CONTROLLED STUDY; ENZYME SUBSTRATE; GLUCONEOGENESIS; GLYCOLYSIS; NONHUMAN; OXIDATION; PRIORITY JOURNAL; SULFOLOBUS TOKODAII; THERMOACIDOPHILIC ARCHAEON;

ARCHAEAL PROTEINS; BASE SEQUENCE; DNA PRIMERS; ENZYME ACTIVATION; GLUCONEOGENESIS; GLYCERALDEHYDE 3-PHOSPHATE; GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASES; GLYCOLYSIS; ISOENZYMES; KINETICS; MUTAGENESIS, SITE-DIRECTED; NAD; NADP; OXIDATION-REDUCTION; PHOSPHORYLATION; PHYLOGENY; RECOMBINANT PROTEINS; SUBSTRATE SPECIFICITY; SULFOLOBUS;

ARCHAEA; SULFOLOBUS SOLFATARICUS; SULFOLOBUS TOKODAII;

EID: 84866633150     PISSN: 00145793     EISSN: 18733468     Source Type: Journal    
DOI: 10.1016/j.febslet.2012.07.059     Document Type: Article

References (24)

1. B. Siebers, and P. Schonheit Unusual pathways and enzymes of central carbohydrate metabolism in Archaea Curr. Opin. Microbiol. 8 2005 695 705
2. B. Siebers, B. Tjaden, K. Michalke, C. Dorr, H. Ahmed, M. Zaparty, P. Gordon, C.W. Sensen, A. Zibat, H.P. Klenk, S.C. Schuster, and R. Hensel Reconstruction of the central carbohydrate metabolism of Thermoproteus tenax by use of genomic and biochemical data Arch. Microbiol. 186 2004 2179 2194
3. C.H. Verhees, S.W. Kengen, J.E. Tuininga, G.J. Schut, M.W. Adams, W.M. De Vos, and J. van der Oost The unique features of glycolytic pathways in Archaea Biochem. J. 375 2003 231 246
4. S.V. Albers, N.K. Birkeland, A.J. Driessen, S. Gertig, P. Haferkamp, H.P. Klenk, T. Kouril, A. Manica, T.K. Pham, P. Ruoff, C. Schleper, D. Schomburg, K.J. Sharkey, B. Siebers, P. Sierocinski, R. Steuer, J. van der Oost, H.V. Westerhoff, P. Wieloch, P.C. Wright, and M. Zaparty SulfoSYS (Sulfolobus Systems Biology): towards a silicon cell model for the central carbohydrate metabolism of the archaeon Sulfolobus solfataricus under temperature variation Biochem. Soc. Trans. 37 2009 58 64
5. I.A. Berg, D. Kockelkorn, W.H. Ramos-Vera, R.F. Say, J. Zarzycki, M. Hugler, B.E. Alber, and G. Fuchs Autotrophic carbon fixation in archaea Nat. Rev. Microbiol. 8 2010 447 460
6. N.A. Brunner, B. Siebers, and R. Hensel Role of two different glyceraldehyde-3-phosphate dehydrogenases in controlling the reversible Embden-Meyerhof-Parnas pathway in Thermoproteus tenax: regulation on protein and transcript level Extremophiles 5 2001 101 109
7. +-dependent glyceraldehyde-3-phosphate dehydrogenases from Streptococcus mutans J. Biol. Chem. 254 1979 1134 1142
8. A. Iddar, F. Valverde, O. Assobhei, A. Serrano, and A. Soukri Widespread occurrence of non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase among gram-positive bacteria Int. Microbiol. 8 2005 251 258
9. C.V. Piattoni, S.P. Rius, D.F. Gomez-Casati, S.A. Guerrero, and A.A. Iglesias Heterologous expression of non-phosphorylating glyceraldehyde-3- phosphate dehydrogenase from Triticum aestivum and Arabidopsis thaliana Biochimie 92 2010 909 913
10. C.F. Cori, S.F. Velick, and G.T. Cori The combination of diphosphopyridine nucleotide with glyceraldehyde phosphate dehydrogenase Biochim. Biophys. Acta 4 1950 160 169
11. J.A. Littlechild, and M. Isupov Glyceraldehyde-3-phosphate dehydrogenase from Sulfolobus solfataricus Methods Enzymol. 331 2001 105 117
12. +-dependent glyceraldehyde-3-phosphate dehydrogenase from Thermoproteus tenax. The first identified archaeal member of the aldehyde dehydrogenase superfamily is a glycolytic enzyme with unusual regulatory properties J. Biol. Chem. 273 1998 6149 6156
13. T.J. Ettema, H. Ahmed, A.C. Geerling, J. van der Oost, and B. Siebers The non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (GAPN) of Sulfolobus solfataricus: a key-enzyme of the semi-phosphorylative branch of the Entner-Doudoroff pathway Extremophiles 12 2008 75 88
14. K. Matsubara, Y. Yokooji, H. Atomi, and T. Imanaka Biochemical and genetic characterization of the three metabolic routes in Thermococcus kodakarensis linking glyceraldehyde 3-phosphate and 3-phosphoglycerate Mol. Microbiol. 81 2011 1300 1312
15. E. Lorentzen, R. Hensel, T. Knura, H. Ahmed, and E. Pohl Structural Basis of allosteric regulation and substrate specificity of the non-phosphorylating glyceraldehyde 3-Phosphate dehydrogenase from Thermoproteus tenax J. Mol. Biol. 341 2004 815 828
16. E. Pohl, N. Brunner, M. Wilmanns, and R. Hensel The crystal structure of the allosteric non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase from the hyperthermophilic archaeum Thermoproteus tenax J. Biol. Chem. 277 2002 19938 19945
17. S. Fabry, and R. Hensel Purification and characterization of D-glyceraldehyde-3-phosphate dehydrogenase from the thermophilic archaebacterium Methanothermus fervidus Eur. J. Biochem. 165 1987 147 155
18. R. Hensel, S. Laumann, J. Lang, H. Heumann, and F. Lottspeich Characterization of two d-glyceraldehyde-3-phosphate dehydrogenases from the extremely thermophilic archaebacterium Thermoproteus tenax Eur. J. Biochem. 170 1987 325 333
19. B. Jia, T. Linh le, S. Lee, B.P. Pham, J. Liu, H. Pan, S. Zhang, and G.W. Cheong Biochemical characterization of glyceraldehyde-3-phosphate dehydrogenase from Thermococcus kodakarensis KOD1 Extremophiles 15 2011 337 346
20. B. Pruss, H.E. Meyer, and A.W. Holldorf Characterization of the glyceraldehyde 3-phosphate dehydrogenase from the extremely halophilic archaebacterium Haloarcula vallismortis Arch. Microbiol. 160 1993 5 11
21. P. Zwickl, S. Fabry, C. Bogedain, A. Haas, and R. Hensel Glyceraldehyde-3-phosphate dehydrogenase from the hyperthermophilic archaebacterium Pyrococcus woesei: characterization of the enzyme, cloning and sequencing of the gene, and expression in Escherichia coli Arch. Microbiol. 172 1990 4329 4338
22. H. Nishimasu, S. Fushinobu, H. Shoun, and T. Wakagi Identification and characterization of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii Arch. Microbiol. 188 2006 2014 2019
23. C.S. Furfine, and S.F. Velick The Acyl-enzyme Intermediate and the Kinetic Mechanism of the Glyceraldehyde 3-Phosphate Dehydrogenase Reaction J. Biol. Chem. 240 1965 844 855
24. + at 2.1 Å resolution J. Mol. Biol. 297 2000 481 500