Highest genetic diversity at the northern range limit of the rare orchid Isotria medeoloides

Heredity

Volumn 109, Issue 4, 2012, Pages 215-221

  Stone, J L ^a   Crystal, P A ^a   Devlin, E E ^a   Downer, R H L ^a   Cameron, D S ^b  

^a Colby College   (United States)

^b Maine Natural Areas Program   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MICROSATELLITE DNA;

AUTOGAMY; CENSUS; COLONIZATION; GENETIC DRIFT; GENETIC MARKER; GENETIC STRUCTURE; GENETIC VARIATION; INBREEDING; POPULATION BOTTLENECK; POPULATION DECLINE; POPULATION GENETICS; POSTGLACIAL; RANGE SIZE; RARE SPECIES;

ARTICLE; BIOLOGICAL MODEL; FOUNDER EFFECT; GENE FREQUENCY; GENE LOCUS; GENETIC DRIFT; GENETIC VARIABILITY; GENETICS; GENOTYPE; GEOGRAPHY; ICE COVER; INBREEDING; ORCHIDACEAE; POPULATION DENSITY; POPULATION GENETICS;

FOUNDER EFFECT; GENE FREQUENCY; GENETIC DRIFT; GENETIC LOCI; GENETIC VARIATION; GENETICS, POPULATION; GENOTYPE; GEOGRAPHY; ICE COVER; INBREEDING; MICROSATELLITE REPEATS; MODELS, GENETIC; ORCHIDACEAE; POPULATION DENSITY;

ISOTRIA MEDEOLOIDES; ORCHIDACEAE;

EID: 84866607388     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2012.31     Document Type: Article

References (47)

1. Alsos IG, Eidesen PB, Ehrich D, Skrede I, Westergaard K, Jacobsen GH et al. (2007). Frequent long-distance plant colonization in the changing Arctic. Science 316: 1606-1609. (Pubitemid 46982031)
2. Arditti J, Ghani AKA (2000). Tansley Review 110: numerical and physical properties of orchid seeds and their biological implications. New Phytol 145: 367-421. (Pubitemid 30165909)
3. Austerlitz F, Jung-Muller B, Godelle B, Gouyon P-H (1997). Evolution of coalescence times, genetic diversity and structure during colonization. Theor Pop Biol 51: 148-164. (Pubitemid 27195659)
4. Beerli P (2006). Comparison of Bayesian and maximum likelihood inference of population genetic parameters. Bioinformatics 33: 341-345. (Pubitemid 43205381)
5. Beerli P, Felsenstein J (2001). Maximum-likelihood estimation of a migration matrix and effective population numbers in n subpopulations by using a coalescent approach. Proc Natl Acad Sci USA 98: 4563-4568. (Pubitemid 32295016)
6. Bialozyt R, Ziegenhagen B, Petit RJ (2006). Contrasting effects of long distance seed dispersal on genetic diversity during range expansion. J Evol Biol 19: 12-20.
7. Charlesworth D, Pannell JR (2001). Mating systems and population genetic structure in the light of coalescent theory. In: Silverton J, Antonovics J (eds). Ecology and Evolution in a Spatial Context. Blackwell Science: Oxford, pp 73-96.
8. Chung MY, Nason JD, Chung MG (2005). Spatial genetic structure in populations of the terrestrial orchid Orchis cylochila (Orchidaceae). Pl Syst Evol 254: 209-219. (Pubitemid 41187718)
9. Chybicki IJ, Burczyk J (2009). Simultaneous estimation of null alleles and inbreeding coefficients. J Hered 100: 106-113.
10. Duffy KJ, Scopece G, Cozzolino S, Fay MF, Smith RJ, Stout JC (2009). Ecology and genetic diversity of the dense-flowered orchid, Neotinea maculata, at the centre and edge of its range. Ann Bot 104: 507-516.
11. Eckert CG, Samis KE, Lougheed C (2008). Genetic variation across species' geographical ranges: the central-marginal hypothesis and beyond. Mol Ecol 17: 1170-1188. (Pubitemid 351294604)
12. Esfeld K, Hensen I, Wesche K, Jakob SS, Tischew S, Blattner FR (2008). Molecular data indicate multiple colonizations of former lignite mining areas in Eastern Germany by Epipactus palustris (Orchidaceae). Biodivers Conserv 17: 2441-2453.
13. Excoffier L, Foll M, Petit RJ (2009). Genetic consequences of range expansions. Ann Rev Ecol Evol Syst 40: 481-501.
14. Excoffier L, Lischer HEL (2010). Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Res 10: 564-567.
15. Forrest AD, Hollingsworth ML, Hollingsworth PM, Sydes C, Bateman RM (2004). Population genetic structure in European populations of Spiranthes romanzoffiana set in the context of other genetic studies on orchids. Heredity 92: 218-227. (Pubitemid 38427305)
16. Hamann A, El-Kassaby YA, Koshy MP, Namkoong G (1998). Multivariate analysis of allozymic and quantitative trait variation in Alnus rubra: geographic patterns and evolutionary implications. Can J For Res 28: 1557-1565.
17. Hamrick JL, Godt MJW (1996). Effects of life history traits on genetic diversity in plant species. Philos Trans R Soc Lond B Biol Sci 351: 1291-1298.
18. Hampe A, Petit RJ (2005). Conserving biodiversity under climate change: the rear edge matters. Ecol Lett 8: 461-467. (Pubitemid 40641134)
19. Hewitt G (2000). The genetic legacy of the Quaternary ice ages. Nature 405: 907-913. (Pubitemid 30435039)
20. Hewitt G (2004). Genetic consequences of climatic oscillations in the Quaternary. Philos Trans R Soc Lond B Biol Sci 359: 183-195. (Pubitemid 38231471)
21. Ibrahim KM, Nichols RA, Hewitt GM (1996). Spatial patterns of genetic variation generated by different forms of dispersal during range expansion. Heredity 77: 282-291.
22. Jacobson Jr GL, Webb III T, Grimm EC (1986). Changing vegetation patterns of eastern North America during the past 18000 years: inferences from overlapping distributions of selected pollen types. In: Ruddiman WF, Wright Jr HE (eds) North America and Adjacent Oceans During the Last Deglaciation. Geological Society of America: Boulder, Plate 2.
23. Johansson M, Primmer CR, Merilä J (2006). History vs current demography: explaining the genetic population structure of the common frog (Rana temporaria). Mol Ecol 15: 975-983.
24. Kalinowski ST (2005). HP-RARE 1.0: a computer program for performing rarefaction on measures of allelic richness. Mol Ecol Notes 5: 187-189. (Pubitemid 40350919)
25. Kennedy AH, Walker GL (2007). The population genetic structure of the showy lady's slipper orchid (Cypripedium reginae Walter) in its glaciated and unglaciated ranges. Castanea 72: 248-261.
26. Klopfstein S, Currat M, Excoffier L (2006). The fate of mutations surfing on the wave of a range expansion. Mol Biol Evol 23: 482-490. (Pubitemid 43278259)
27. Knowles LL, Alvarado-Serrano DF (2010). Exploring the population genetic consequences of the colonization process with spatio-temporally explicit models: insights from coupled ecological, demographic, and genetic models in montane grasshoppers. Molecular Ecology 19: 3727-3745.
28. Leimu R, Mutikainen P, Koricheva J, Fischer M (2006). How general are positive relationships between plant population size, fitness, and genetic variation? J Ecol 94: 942-952. (Pubitemid 44167953)
29. Mable BK, Adam A (2007). Patterns of genetic diversity in outcrossing and selfing populations of Arabidopsis lyrata. Mol Ecol 16: 3565-3580. (Pubitemid 47383108)
30. Mehrhoff III LA (1983). Pollination in the genus Isotria (Orchidaceae). Am J Bot 70: 1444-1453.
31. Murren CJ (2003). Spatial and demographic population genetic structure in Catasetum viridiflavum across a human-disturbed habitat. J Evol Biol 16: 333-342. (Pubitemid 36261063)
32. NatureServe (2011). NatureServe Explorer. An online encyclopedia of life [web application]. Version 7.1 NatureServe: Arlington, Virginia, Available. http://www.natureserve.org/explorer (Accessed: November 11, 2011).
33. Nordborg M (2000). Linkage disequilibrium, gene trees and selfing: an ancestral recombination graph with partial self-fertilization. Genetics 154: 923-929. (Pubitemid 30096610)
34. Peakall R, Smouse P (2006). GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes 6: 288-295. (Pubitemid 43373825)
35. Pielou EC (1991). After the Ice Age: The Return of Life to Glaciated North America. University of Chicago Press: Chicago.
36. Schoen DJ, Morgan MT, Bataillon T (1996). How does self-pollination evolve? Inferences from floral ecology and molecular genetic variation. Phil Trans R Soc Lond B 351: 1281-1290.
37. Sexton JP, McIntyre PJ, Angert AL, Rice KJ (2009). Evolution and ecology of species range limits. Annu Rev Ecol Evol Syst 40: 415-436.
38. Siol M, Bonin I, Olivieri I, Prosperi JM, Ronfort J (2007). Effective population size associated with self-fertilization: lessons from temporal changes in allele frequencies in the selfing annual Medicago truncatula. J Evol Biol 20: 2349-2360. (Pubitemid 47621897)
39. Slatkin M (1995). A measure of population subdivision based on microsatellite allele frequencies. Genetics 139: 457-462.
40. Swarts ND, Sinclair EA, Krauss SL, Dixon KW (2009). Genetic diversity in fragmented populations of the critically endangered spider orchid Caledenia huegelii: implications for conservation. Conserv Genet 19: 1199-1208.
41. Trapnell DW, Hamrick JL (2004). Partitioning nuclear and chloroplast variation at multiple spatial scales in the neotropical epiphytic orchid, Laelia rubescens. Mol Ecol 13: 2655-2666. (Pubitemid 39151623)
42. Tremblay RL, Ackerman JD, Zimmerman JK, Calvo RN (2005). Variation in sexual reproduction in orchids and its evolutionary consequences: a spasmodic journey to diversification. Biol J Linn Soc Lond 84: 1-54. (Pubitemid 40181156)
43. USFWS (2007). Small Whorled Pogonia (Isotria medeoloides) 5-Year Review: Summary and Evaluation. U.S. Fish and Wildlife Service, New England Office: Concord, New Hampshire.
44. Vitt P, Campbell CS (1997). Reproductive biology of Isotria medeoloides (Orchidaceae). Rhodora 99: 56-63. (Pubitemid 127462208)
45. Van Rossum F, Prentice HC (2004). Structure of allozyme variation in Nordic Silene nutans (Caryophyllaceae): population size, geographical position and immigration history. Biol J Linn Soc 81: 357-371. (Pubitemid 38370714)
46. Wallace LE, Case MA (2000). Contrasting allozyme diversity between northern and southern populations of Cypripedium parviflorum (Orchidaceae): implications for Pleistocene refugia and taxonomic boundaries. Syst Bot 25: 281-296. (Pubitemid 30388096)
47. Wilson GA, Rannala B (2003). Bayesian inference of recent migration rates using multilocus genotypes. Genetics 163: 1177-1191. (Pubitemid 36417957)