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Volumn 13, Issue 1, 2012, Pages

ESTclean: A cleaning tool for next-gen transcriptome shotgun sequencing

Author keywords

[No Author keywords available]

Indexed keywords

CDNA SEQUENCE; CLEANING PROCESS; CLEANING TOOLS; DIFFERENT PROTOCOLS; LOW QUALITIES; NEXT-GENERATION SEQUENCING; SUMMARY TABLES; TRANSCRIPTOMES;

EID: 84866554191     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-13-247     Document Type: Article
Times cited : (7)

References (12)
  • 1
    • 37749031255 scopus 로고    scopus 로고
    • Next-generation sequencing transforms today's biology
    • Schuster SC. Next-generation sequencing transforms today's biology. Nat Meth 2008, 5:16-18.
    • (2008) Nat Meth , vol.5 , pp. 16-18
    • Schuster, S.C.1
  • 3
    • 84876407377 scopus 로고    scopus 로고
    • VecScreen
    • VecScreen. http://www.ncbi.nlm.nih.gov/VecScreen/VecScreen.html.
  • 4
    • 0036137277 scopus 로고    scopus 로고
    • DNA sequence quality trimming and vector removal
    • Chou HH, Holmes MH. DNA sequence quality trimming and vector removal. Bioinformatics 2001, 17(12):1093-1104.
    • (2001) Bioinformatics , vol.17 , Issue.12 , pp. 1093-1104
    • Chou, H.H.1    Holmes, M.H.2
  • 5
    • 84871926999 scopus 로고    scopus 로고
    • Cross_match
    • Cross_match. http://www.phrap.org/phredphrapconsed.html.
  • 6
    • 84876417041 scopus 로고    scopus 로고
    • SeqClean
    • SeqClean. https://sourceforge.net/projects/seqclean/.
  • 7
    • 39149120619 scopus 로고    scopus 로고
    • Figaro: a novel statistical method for vector sequence removal
    • White JR, Roberts M, Yorke JA, Pop M. Figaro: a novel statistical method for vector sequence removal. Bioinformatics 2008, 24(4):462-467.
    • (2008) Bioinformatics , vol.24 , Issue.4 , pp. 462-467
    • White, J.R.1    Roberts, M.2    Yorke, J.A.3    Pop, M.4
  • 9
    • 84876421049 scopus 로고    scopus 로고
    • Parallel Tagged Sequencing
    • Parallel Tagged Sequencing. https://bioinf.eva.mpg.de/pts/.
  • 11
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino-acid sequence of two proteins
    • Needleman SB, Wunsch CD. A general method applicable to the search for similarities in the amino-acid sequence of two proteins. J Mol Biol 1970, 48:443-453.
    • (1970) J Mol Biol , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 12
    • 18744383071 scopus 로고    scopus 로고
    • GMAP: a genomic mapping and alignment program for mRNA and EST sequences
    • Wu TD, Watanabe CK. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 2005, 21(9):1859-1875.
    • (2005) Bioinformatics , vol.21 , Issue.9 , pp. 1859-1875
    • Wu, T.D.1    Watanabe, C.K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.