-
1
-
-
79851508812
-
Genome mining for ribosomally synthesized natural products
-
Velásquez JE, van der Donk WA (2011) Genome mining for ribosomally synthesized natural products. Curr Opin Chem Biol 15:11-21.
-
(2011)
Curr Opin Chem Biol
, vol.15
, pp. 11-21
-
-
Velásquez, J.E.1
Van Der Donk, W.A.2
-
2
-
-
84864990340
-
Lasso peptides: Structure, function, biosynthesis, and engineering
-
Maksimov MO, Pan SJ, Link AJ (2012) Lasso peptides: Structure, function, biosynthesis, and engineering. Nat Prod Rep 29:996-1006.
-
(2012)
Nat Prod Rep
, vol.29
, pp. 996-1006
-
-
Maksimov, M.O.1
Pan, S.J.2
Link, A.J.3
-
3
-
-
69449107448
-
Potential applicability of chymotrypsin-susceptible microcin J25 derivatives to food preservation
-
Pomares MF, et al. (2009) Potential applicability of chymotrypsin- susceptible microcin J25 derivatives to food preservation. Appl Environ Microbiol 75:5734-5738.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5734-5738
-
-
Pomares, M.F.1
-
4
-
-
0036449410
-
Thermolysin-linearized microcin J25 retains the structured core of the native macrocyclic peptide and displays antimicrobial activity
-
DOI 10.1046/j.1432-1033.2002.03340.x
-
Blond A, et al. (2002) Thermolysin-linearized microcin J25 retains the structured core of the native macrocyclic peptide and displays antimicrobial activity. Eur J Biochem 269:6212-6222. (Pubitemid 35461834)
-
(2002)
European Journal of Biochemistry
, vol.269
, Issue.24
, pp. 6212-6222
-
-
Blond, A.1
Cheminant, M.2
Destoumieux-Garzon, D.3
Segalas-Milazzo, I.4
Peduzzi, J.5
Goulard, C.6
Rebuffat, S.7
-
5
-
-
0029972742
-
MS-271, a novel inhibitor of calmodulin-activated myosin light chain kinase from Streptomyces sp. - II. Solution structure of MS-271: Characteristic features of the "lasso' structure
-
Katahira R, Yamasaki M, Matsuda Y, Yoshida M (1996) MS-271, a novel inhibitor of calmodulin-activated myosin light chain kinase from Streptomyces sp. - II. Solution structure of MS-271: Characteristic features of the "lasso' structure. Bioorg Med Chem 4:121-129.
-
(1996)
Bioorg Med Chem
, vol.4
, pp. 121-129
-
-
Katahira, R.1
Yamasaki, M.2
Matsuda, Y.3
Yoshida, M.4
-
6
-
-
0028013518
-
Solution structure of RP 71955, a new 21 amino acid tricyclic peptide active against HIV-1 virus
-
Fréchet D, et al. (1994) Solution structure of RP 71955, a new 21 amino acid tricyclic peptide active against HIV-1 virus. Biochemistry 33:42-50. (Pubitemid 24046494)
-
(1994)
Biochemistry
, vol.33
, Issue.1
, pp. 42-50
-
-
Frechet, D.1
Guitton, J.D.2
Herman, F.3
Faucher, D.4
Helynck, G.5
Du, S.B.M.6
Ridoux, J.P.7
James-Surcouf, E.8
Vuilhorgne, M.9
-
7
-
-
0029285913
-
High-resolution solution structure of siamycin II: Novel amphipathic character of a 21-residue peptide that inhibits HIV fusion
-
Constantine KL, et al. (1995) High-resolution solution structure of siamycin II: Novel amphipathic character of a 21-residue peptide that inhibits HIV fusion. J Biomol NMR 5:271-286.
-
(1995)
J Biomol NMR
, vol.5
, pp. 271-286
-
-
Constantine, K.L.1
-
8
-
-
0029117252
-
Solution structure of endothelin B receptor selective antagonist RES-701-1 determined by 1H NMR spectroscopy
-
Katahira R, Shibata K, Yamasaki M, Matsuda Y, Yoshida M (1995) Solution structure of endothelin B receptor selective antagonist RES-701-1 determined by 1H NMR spectroscopy. Bioorg Med Chem 3:1273-1280.
-
(1995)
Bioorg Med Chem
, vol.3
, pp. 1273-1280
-
-
Katahira, R.1
Shibata, K.2
Yamasaki, M.3
Matsuda, Y.4
Yoshida, M.5
-
9
-
-
0141988966
-
Structure of antibacterial peptide microcin J25: A 21-residue lariat protoknot
-
DOI 10.1021/ja036677e
-
Bayro MJ, et al. (2003) Structure of antibacterial peptide microcin J25: A 21-residue lariat protoknot. J Am Chem Soc 125:12382-12383. (Pubitemid 37254737)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.41
, pp. 12382-12383
-
-
Bayro, M.J.1
Mukhopadhyay, J.2
Swapna, G.V.T.3
Huang, J.Y.4
Ma, L.-C.5
Sineva, E.6
Dawson, P.E.7
Montelione, G.T.8
Ebright, R.H.9
-
10
-
-
0141919821
-
Structure of microcin J25, a peptide inhibitor of bacterial RNA polymerase, is a lassoed tail
-
Wilson KA, et al. (2003) Structure of microcin J25, a peptide inhibitor of bacterial RNA polymerase, is a lassoed tail. J Am Chem Soc 125:12475-12483.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 12475-12483
-
-
Wilson, K.A.1
-
11
-
-
0141919822
-
Microcin J25 has a threaded sidechain-to-backbone ring structure and not a head-to-tail cyclized backbone
-
DOI 10.1021/ja0367703
-
Rosengren KJ, et al. (2003) Microcin J25 has a threaded sidechain-to-backbone ring structure and not a head-to-tail cyclized backbone. J Am Chem Soc 125:12464-12474. (Pubitemid 37254763)
-
(2003)
Journal of the American Chemical Society
, vol.125
, Issue.41
, pp. 12464-12474
-
-
Rosengren, K.J.1
Clark, R.J.2
Daly, N.L.3
Goransson, U.4
Jones, A.5
Craik, D.J.6
-
12
-
-
33745073139
-
Lariatins, antimycobacterial peptides produced by Rhodococcus sp. K01-B0171, have a lasso structure
-
DOI 10.1021/ja056780z
-
Iwatsuki M, et al. (2006) Lariatins, antimycobacterial peptides produced by Rhodococcus sp. K01-B0171, have a lasso structure. J Am Chem Soc 128:7486-7491. (Pubitemid 43880321)
-
(2006)
Journal of the American Chemical Society
, vol.128
, Issue.23
, pp. 7486-7491
-
-
Iwatsuki, M.1
Tomoda, H.2
Uchida, R.3
Gouda, H.4
Hirono, S.5
Omura, S.6
-
13
-
-
50249144136
-
Isolation and structural characterization of capistruin, a lasso peptide predicted from the genome sequence of Burkholderia thailandensis E264
-
Knappe TA, et al. (2008) Isolation and structural characterization of capistruin, a lasso peptide predicted from the genome sequence of Burkholderia thailandensis E264. J Am Chem Soc 130:11446-11454.
-
(2008)
J Am Chem Soc
, vol.130
, pp. 11446-11454
-
-
Knappe, T.A.1
-
14
-
-
0026073084
-
Anantin - A peptide antagonist of the atrial natriuretic factor (ANF). II. Determination of the primary sequence by NMR on the basis of proton assignments
-
Wyss DF, Lahm HW, Manneberg M, Labhardt AM (1991) Anantin - A peptide antagonist of the atrial natriuretic factor (ANF). II. Determination of the primary sequence by NMR on the basis of proton assignments. J Antibiot (Tokyo) 44:172-180.
-
(1991)
J Antibiot (Tokyo)
, vol.44
, pp. 172-180
-
-
Wyss, D.F.1
Lahm, H.W.2
Manneberg, M.3
Labhardt, A.M.4
-
15
-
-
0031006183
-
Propeptin, a new inhibitor of prolyl endopeptidase produced by Microbispora. I. Fermentation, isolation and biological properties
-
Kimura KI, et al. (1997) Propeptin, a new inhibitor of prolyl endopeptidase produced by Microbispora. I. Fermentation, isolation and biological properties. J Antibiot (Tokyo) 50:373-378.
-
(1997)
J Antibiot (Tokyo)
, vol.50
, pp. 373-378
-
-
Kimura, K.I.1
-
16
-
-
77649270287
-
The glucagon receptor antagonist BI-32169 constitutes a new class of lasso peptides
-
Knappe TA, Linne U, Xie XL, Marahiel MA (2010) The glucagon receptor antagonist BI-32169 constitutes a new class of lasso peptides. FEBS Lett 584:785-789.
-
(2010)
FEBS Lett
, vol.584
, pp. 785-789
-
-
Knappe, T.A.1
Linne, U.2
Xie, X.L.3
Marahiel, M.A.4
-
17
-
-
77957656356
-
High-resolution crystal structure of a lasso peptide
-
Nar H, Schmid A, Puder C, Potterat O (2010) High-resolution crystal structure of a lasso peptide. ChemMedChem 5:1689-1692.
-
(2010)
ChemMedChem
, vol.5
, pp. 1689-1692
-
-
Nar, H.1
Schmid, A.2
Puder, C.3
Potterat, O.4
-
18
-
-
0032962962
-
Sequence analysis of the four plasmid genes required to produce the circular peptide antibiotic microcin J25
-
Solbiati JO, et al. (1999) Sequence analysis of the four plasmid genes required to produce the circular peptide antibiotic microcin J25. J Bacteriol 181:2659-2662. (Pubitemid 29181598)
-
(1999)
Journal of Bacteriology
, vol.181
, Issue.8
, pp. 2659-2662
-
-
Solbiati, J.O.1
Ciaccio, M.2
Farias, R.N.3
Gonzalez-Pastor, J.E.4
Moreno, F.5
Salomon, R.A.6
-
19
-
-
84864697583
-
Molecular cloning of the gene cluster for lariatin biosynthesis of Rhodococcus jostii K01-B0171
-
Inokoshi J, Matsuhama M, Miyake M, Ikeda H, Tomoda H (2012) Molecular cloning of the gene cluster for lariatin biosynthesis of Rhodococcus jostii K01-B0171. Appl Microbiol Biotechnol 95:451-460.
-
(2012)
Appl Microbiol Biotechnol
, vol.95
, pp. 451-460
-
-
Inokoshi, J.1
Matsuhama, M.2
Miyake, M.3
Ikeda, H.4
Tomoda, H.5
-
20
-
-
80054865417
-
A mass spectrometry-guided genome mining approach for natural product peptidogenomics
-
Kersten RD, et al. (2011) A mass spectrometry-guided genome mining approach for natural product peptidogenomics. Nat Chem Biol 7:794-802.
-
(2011)
Nat Chem Biol
, vol.7
, pp. 794-802
-
-
Kersten, R.D.1
-
21
-
-
34447552357
-
Two Enzymes Catalyze the Maturation of a Lasso Peptide in Escherichia coli
-
DOI 10.1016/j.chembiol.2007.06.004, PII S1074552107002086
-
Duquesne S, et al. (2007) Two enzymes catalyze the maturation of a lasso peptide in Escherichia coli. Chem Biol 14:793-803. (Pubitemid 47081422)
-
(2007)
Chemistry and Biology
, vol.14
, Issue.7
, pp. 793-803
-
-
Duquesne, S.1
Destoumieux-Garzon, D.2
Zirah, S.3
Goulard, C.4
Peduzzi, J.5
Rebuffat, S.6
-
22
-
-
84856587556
-
Construction of a single polypeptide that matures and exports the lasso peptide microcin J25
-
Pan SJ, Rajniak J, Cheung WL, Link AJ (2012) Construction of a single polypeptide that matures and exports the lasso peptide microcin J25. ChemBioChem 13:367-370.
-
(2012)
ChemBioChem
, vol.13
, pp. 367-370
-
-
Pan, S.J.1
Rajniak, J.2
Cheung, W.L.3
Link, A.J.4
-
23
-
-
84860232127
-
Dissecting the maturation steps of the lasso peptide microcin J25 in vitro
-
Yan KP, et al. (2012) Dissecting the maturation steps of the lasso peptide microcin J25 in vitro. ChemBioChem 13:1046-1052.
-
(2012)
ChemBioChem
, vol.13
, pp. 1046-1052
-
-
Yan, K.P.1
-
24
-
-
0030006825
-
Genetic analysis of plasmid determinants for microcin J25 production and immunity
-
Solbiati JO, Ciaccio M, Farías RN, Salomón RA (1996) Genetic analysis of plasmid determinants for microcin J25 production and immunity. J Bacteriol 178:3661-3663. (Pubitemid 26179650)
-
(1996)
Journal of Bacteriology
, vol.178
, Issue.12
, pp. 3661-3663
-
-
Solbiati, J.O.1
Ciaccio, M.2
Parias, R.N.3
Salomon, R.A.4
-
25
-
-
0026526445
-
Microcin 25, a novel antimicrobial peptide produced by Escherichia coli
-
Salomón RA, Farías RN (1992) Microcin 25, a novel antimicrobial peptide produced by Escherichia coli. J Bacteriol 174:7428-7435.
-
(1992)
J Bacteriol
, vol.174
, pp. 7428-7435
-
-
Salomón, R.A.1
Farías, R.N.2
-
26
-
-
4644250057
-
BI-32169, a bicyclic 19-peptide with strong glucagon receptor antagonist activity from Streptomyces sp.
-
DOI 10.1021/np040093o
-
Potterat O, et al. (2004) BI-32169, a bicyclic 19-peptide with strong glucagon receptor antagonist activity from Streptomyces sp. J Nat Prod 67:1528-1531. (Pubitemid 39298622)
-
(2004)
Journal of Natural Products
, vol.67
, Issue.9
, pp. 1528-1531
-
-
Potterat, O.1
Wagner, K.2
Gemmecker, G.3
Mack, J.4
Puder, C.5
Vettermann, R.6
Streicher, R.7
-
27
-
-
13344277279
-
Characterization of siamycin I, a human immunodeficiency virus fusion inhibitor
-
Lin PF, et al. (1996) Characterization of siamycin I, a human immunodeficiency virus fusion inhibitor. Antimicrob Agents Chemother 40:133-138.
-
(1996)
Antimicrob Agents Chemother
, vol.40
, pp. 133-138
-
-
Lin, P.F.1
-
28
-
-
34548303828
-
Low-molecular-weight post-translationally modified microcins
-
DOI 10.1111/j.1365-2958.2007.05874.x
-
Severinov K, Semenova E, Kazakov A, Kazakov T, Gelfand MS (2007) Low-molecular-weight post-translationally modified microcins. Mol Microbiol 65:1380-1394. (Pubitemid 47347826)
-
(2007)
Molecular Microbiology
, vol.65
, Issue.6
, pp. 1380-1394
-
-
Severinov, K.1
Semenova, E.2
Kazakov, A.3
Kazakov, T.4
Gelfand, M.S.5
-
29
-
-
77950438898
-
Much of the microcin J25 leader peptide is dispensable
-
Cheung WL, Pan SJ, Link AJ (2010) Much of the microcin J25 leader peptide is dispensable. J Am Chem Soc 132:2514-2515.
-
(2010)
J Am Chem Soc
, vol.132
, pp. 2514-2515
-
-
Cheung, W.L.1
Pan, S.J.2
Link, A.J.3
-
30
-
-
84855953858
-
The role of a conserved threonine residue in the leader peptide of lasso peptide precursors
-
Pan SJ, Rajniak J, Maksimov MO, Link AJ (2012) The role of a conserved threonine residue in the leader peptide of lasso peptide precursors. Chem Commun (Camb) 48: 1880-1882.
-
(2012)
Chem Commun (Camb)
, vol.48
, pp. 1880-1882
-
-
Pan, S.J.1
Rajniak, J.2
Maksimov, M.O.3
Link, A.J.4
-
31
-
-
0031877016
-
Combining evidence using p-values: Application to sequence homology searches
-
Bailey TL, Gribskov M (1998) Combining evidence using P-values: Application to sequence homology searches. Bioinformatics 14:48-54. (Pubitemid 28395676)
-
(1998)
Bioinformatics
, vol.14
, Issue.1
, pp. 48-54
-
-
Bailey, T.L.1
Gribskov, M.2
-
32
-
-
0002759539
-
Unsupervised learning of multiple motifs in biopolymers using expectation maximization
-
Bailey TL, Elkan C (1995) Unsupervised learning of multiple motifs in biopolymers using expectation maximization. Mach Learn 21:51-80.
-
(1995)
Mach Learn
, vol.21
, pp. 51-80
-
-
Bailey, T.L.1
Elkan, C.2
-
33
-
-
0033534161
-
Three-dimensional structure of Escherichia coli Asparagine Synthetase B: A short journey from substrate to product
-
Larsen TM, et al. (1999) Three-dimensional structure of Escherichia coli asparagine synthetase B: A short journey from substrate to product. Biochemistry 38: 16146-16157. (Pubitemid 129520535)
-
(1999)
Biochemistry
, vol.38
, Issue.49
, pp. 16146-16157
-
-
Larsen, T.M.1
Boehlein, S.K.2
Schuster, S.M.3
Richards, N.G.J.4
Thoden, J.B.5
Holden, H.M.6
Rayment, I.7
-
34
-
-
36049014020
-
Novel propeptin analog, propeptin-2, missing two amino acid residues from the propeptin C-terminus loses antibiotic potency
-
Kimura K, et al. (2007) Novel propeptin analog, propeptin-2, missing two amino acid residues from the propeptin C-terminus loses antibiotic potency. J Antibiot (Tokyo) 60:519-523.
-
(2007)
J Antibiot (Tokyo)
, vol.60
, pp. 519-523
-
-
Kimura, K.1
-
35
-
-
79955781435
-
Topoisomer differentiation of molecular knots by FTICR MS: Lessons from class II lasso peptides
-
Zirah S, et al. (2011) Topoisomer differentiation of molecular knots by FTICR MS: Lessons from class II lasso peptides. J Am Soc Mass Spectrom 22:467-479.
-
(2011)
J Am Soc Mass Spectrom
, vol.22
, pp. 467-479
-
-
Zirah, S.1
-
36
-
-
84858331115
-
NMR as an effective tool for the structure determination of lasso peptides
-
Xie XL, Marahiel MA (2012) NMR as an effective tool for the structure determination of lasso peptides. ChemBioChem 13:621-625.
-
(2012)
ChemBioChem
, vol.13
, pp. 621-625
-
-
Xie, X.L.1
Marahiel, M.A.2
-
37
-
-
0031576336
-
Torsion angle dynamics for NMR structure calculation with the new program DYANA
-
Güntert P, Mumenthaler C, Wüthrich K (1997) Torsion angle dynamics for NMR structure calculation with the new program DYANA. J Mol Biol 273:283-298.
-
(1997)
J Mol Biol
, vol.273
, pp. 283-298
-
-
Güntert, P.1
Mumenthaler, C.2
Wüthrich, K.3
-
38
-
-
18244373198
-
YojI of Escherichia coli functions as a microcin J25 efflux pump
-
DOI 10.1128/JB.187.10.3465-3470.2005
-
Delgado MA, Vincent PA, Farías RN, Salomón RA (2005) YojI of Escherichia coli functions as a microcin J25 efflux pump. J Bacteriol 187:3465-3470. (Pubitemid 40628702)
-
(2005)
Journal of Bacteriology
, vol.187
, Issue.10
, pp. 3465-3470
-
-
Delgado, M.A.1
Vincent, P.A.2
Farias, R.N.3
Salomon, R.A.4
-
39
-
-
54449095128
-
Systematic structure-activity analysis of microcin J25
-
Pavlova O, Mukhopadhyay J, Sineva E, Ebright RH, Severinov K (2008) Systematic structure-activity analysis of microcin J25. J Biol Chem 283:25589- 25595.
-
(2008)
J Biol Chem
, vol.283
, pp. 25589-25595
-
-
Pavlova, O.1
Mukhopadhyay, J.2
Sineva, E.3
Ebright, R.H.4
Severinov, K.5
-
40
-
-
79951870980
-
Computational design of functional variants of the antimicrobial peptide Microcin J25
-
Pan SJ, Cheung WL, Fung HK, Floudas CA, Link AJ (2011) Computational design of functional variants of the antimicrobial peptide Microcin J25. Protein Eng Des Sel 24: 275-282.
-
(2011)
Protein Eng des Sel
, vol.24
, pp. 275-282
-
-
Pan, S.J.1
Cheung, W.L.2
Fung, H.K.3
Floudas, C.A.4
Link, A.J.5
-
41
-
-
79953852240
-
Sequence diversity in the lasso peptide framework: Discovery of functional microcin J25 variants with multiple amino acid substitutions
-
Pan SJ, Link AJ (2011) Sequence diversity in the lasso peptide framework: Discovery of functional microcin J25 variants with multiple amino acid substitutions. J Am Chem Soc 133:5016-5023.
-
(2011)
J Am Chem Soc
, vol.133
, pp. 5016-5023
-
-
Pan, S.J.1
Link, A.J.2
-
42
-
-
73149084418
-
Insights into the biosynthesis and stability of the lasso peptide capistruin
-
Knappe TA, Linne U, Robbel L, Marahiel MA (2009) Insights into the biosynthesis and stability of the lasso peptide capistruin. Chem Biol 16:1290-1298.
-
(2009)
Chem Biol
, vol.16
, pp. 1290-1298
-
-
Knappe, T.A.1
Linne, U.2
Robbel, L.3
Marahiel, M.A.4
-
43
-
-
0034201441
-
EMBOSS: The European molecular biology open software suite
-
Rice P, Longden I, Bleasby A (2000) EMBOSS: The European molecular biology open software suite. Trends Genet 16:276-277.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
44
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey TL, Elkan C (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 2:28-36.
-
(1994)
Proc Int Conf Intell Syst Mol Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
46
-
-
45249127991
-
Rapid recording of 2D NMR spectra without phase cycling. Application to the study of hydrogen exchange in proteins
-
Marion D, Ikura M, Tschudin R, Bax A (1989) Rapid recording of 2D NMR spectra without phase cycling. Application to the study of hydrogen exchange in proteins. J Magn Reson 85:393-399.
-
(1989)
J Magn Reson
, vol.85
, pp. 393-399
-
-
Marion, D.1
Ikura, M.2
Tschudin, R.3
Bax, A.4
-
47
-
-
44949273991
-
Absorption-mode two-dimensional NMR spectra recorded using pulsed field gradients
-
Davis AL, Laue ED, Keeler J, Moskau D, Lohman J (1991) Absorption-mode two-dimensional NMR spectra recorded using pulsed field gradients. J Magn Reson 94: 637-644.
-
(1991)
J Magn Reson
, vol.94
, pp. 637-644
-
-
Davis, A.L.1
Laue, E.D.2
Keeler, J.3
Moskau, D.4
Lohman, J.5
-
48
-
-
0000492963
-
Broadband homonuclear cross polarization in 2D N.M.R. using DIPSI-2
-
Rucker SP, Shaka AJ (1989) Broadband homonuclear cross polarization in 2D N.M.R. using DIPSI-2. Mol Phys 68:509-517.
-
(1989)
Mol Phys
, vol.68
, pp. 509-517
-
-
Rucker, S.P.1
Shaka, A.J.2
-
49
-
-
79960698472
-
Water suppression that works. Excitation sculpting using arbitrary wave-forms and pulsed-field gradients
-
Hwang TL, Shaka AJ (1995) Water suppression that works. Excitation sculpting using arbitrary wave-forms and pulsed-field gradients. J Magn Reson A 112:275-279.
-
(1995)
J Magn Reson A
, vol.112
, pp. 275-279
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Hwang, T.L.1
Shaka, A.J.2
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