Transcriptome analysis of Pyrus pyrifolia leaf buds during transition from endodormancy to ecodormancy

Scientia Horticulturae

Volumn 147, Issue , 2012, Pages 49-55

  Nishitani, Chikako ^a   Saito, Takanori ^a,b   Ubi, Benjamin Ewa ^a,c   Shimizu, Tokurou ^a   Itai, Akihiro ^d   Saito, Toshihiro ^a   Yamamoto, Toshiya ^a   Moriguchi, Takaya ^a,b  

^a NATIONAL INSTITUTE OF FRUIT TREE SCIENCE   (Japan)

^b UNIVERSITY OF TSUKUBA   (Japan)

^c EBONYI STATE UNIVERSITY   (Nigeria)

^d TOTTORI UNIVERSITY   (Japan)

Author keywords

Dormancy; Microarray; Pyrus pyrifolia; Transcription factors

Indexed keywords

ARRAY; CHLOROPLAST; DECIDUOUS TREE; DEVELOPMENTAL BIOLOGY; DORMANCY; GENE EXPRESSION; PLASTID;

TAIWAN;

PYRUS; PYRUS PYRIFOLIA; PYRUS PYRIFOLIA VAR. CULTA;

EID: 84866531342     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2012.09.001     Document Type: Article

References (30)

1. Bielenberg D.G., Wang Y., Li Z., Zhebentyayeva T., Fan S., Reighard G.R., Scorza R., Abbott A.G. Sequencing and annotation of the evergrowing locus in peach [Prunus persica (L.) Batsch] reveals a cluster of six MADS-box transcription factors as candidate genes for regulation of terminal bud formation. Tree Genet. Genom. 2008, 4:495-507.
2. Fujiwara S., Wang L., Han L., Shu S.-S., Salomeó P.A., McClung C.R., Somers D.E. Post-translational regulation of the Arabidopsis circadian clock through selective proteolysis and phosphorylation of pseudo-response regulator proteins. J. Biol. Chem. 2008, 283:23073-23083.
3. Heide O.M., Prestrud A.K. Low temperature, but not photoperiod, controls growth cessation and dormancy induction and release in apple and pear. Tree Physiol. 2005, 25:109-114.
4. Heide O.M. Interaction of photoperiod and temperature in the control of growth and dormancy of Prunus species. Sci. Hortic. 2008, 115:309-314.
5. Ibáñez C., Kozarewa I., Johansson M., Ogren E., Rohde A., Eriksson M.E. Circadian clock components regulated entry and affect exit of seasonal dormancy as well as winter hardiness in Populus trees. Plant Physiol. 2010, 153:1823-1833.
6. Janssen B.J., Thodey K., Schaffer R.J., Alba R., Balakrishnan L., Bishop R., Bowen J.H., Crowhurst R.N., Gleave A.P., Ledger S., McArtney S., Pichler F.B., Snowden K.C., Ward S. Global gene expression analysis of apple fruit development from the floral bud to ripe fruit. BMC Plant Biol. 2008, 8:16.
7. Jiménez S., Lawton-Rauh A.L., Reighard G.L., Abbott A.G., Bielenberg D.G. Phylogenetic analysis and molecular evolution of the dormancy associated MADS-box genes from peach. BMC Plant Biol. 2009, 9:81.
8. Keilin T., Pang X., Venkateswari J., Halaly T., Crane O., Keren A., Ogrodovitch A., Ophir R., Volpin H., Galbraith D., Or E. Digital expression profiling of a grape-bud EST collection leads to new insight into molecular events during grape-bud dormancy release. Plant Sci. 2007, 173:446-457.
9. Kuroda H., Sugiura T., Ito D. Changes in hydrogen peroxide content in flower buds of Japanese pear (Pyrus pyrifolia Nakai) in relation to breaking of endodormancy. J. Jpn. Soc. Hortic. Sci. 2002, 71:610-616.
10. Liu C.-C., Liu C.-F., Wand H.-X., Shen Z.-Y., Yang C.-P., Wei Z.-G. Identification and analysis of phosphorylation status of proteins in dormant terminal buds of poplar. BMC Plant Biol. 2011, 11:158.
11. Leida C., Terol J., Martí G., Agustí M., Llácer G., Badenes M.L., Ríos G. Identification of genes associated with bud dormancy release in Prunus persica by suppression subtractive hybridization. Tree Physiol. 2010, 30:655-666.
12. Nakamichi N., Kiba T., Henriques R., Mizuno T., Chua N.H., Sakakibara H. PSEUDO-RESPONSE REGULATORS 9, 7, and 5 are transcriptional repressors in the Arabidopsis circadian clock. Plant Cell 2010, 22:594-605.
13. Nir G., Lavee S. Metabolic changes during cyanamide induced dormancy release in grapevines. Acta Hortic. 1993, 329:271-274.
14. Nishitani C., Shimizu T., Fujii H., Terakami S., Yamamoto T. Analysis of expressed sequence tags from Japanese pear 'Housui'. Acta Hortic. 2009, 814:645-647.
15. Nishitani C., Shimizu T., Fujii H., Hosaka F., Terakami S., Nakamura Y., Itai A., Yamaguchi-Nakamura A., Yamamoto T. Oligoarray analysis of gene expression in ripening Japanese pear fruit. Sci. Hortic. 2010, 124:195-203.
16. Olsen J.E. Molecular and physiological mechanisms of bud dormancy regulation. Acta Hortic. 2003, 618:437-453.
17. Rozen S., Skaletsky H.J. Primer3 on the WWW for general users and for biologist programmers. Bioinformatics Methods and Protocols: Methods in Molecular Biology 2000, 365-386. Humana Press, Totowa, NJ. S. Krawetz, S. Misener (Eds.).
18. Sasaki R., Yamane H., Ooka T., Jotatsu H., Kitamura Y., Akagi T., Tao R. Functional and expressional analysis of PmDAM genes associated with endodormancy in Japanese Apricot. Plant Physiol. 2011, 157:485-497.
19. Sagisaka S. Occurrence of unidentified bodies that resemble plastid initials in poplar cells after breaking of dormancy in midwinter. Trees 1991, 5:143-148.
20. Schaffer R., Ramsay N., Samach A., Corden S., Putterill J., Carre I.A., Coupland G. The late elongated hypocotyl mutation of Arabidopsis disrupts circadian rhythms and the photoperiodic control of flowering. Cell 1998, 93:1219-1229.
21. Shulman Y., Nir G., Fanberstein L., Lavee S. The effect of cyanamide on the release from dormancy of grapevine buds. Sci. Hortic. 1983, 19:97-104.
22. Siller-Cepeda J.H., Fuchigami L.H., Chen T.H.H. Hydrogen cyanamide-induced budbreak and phytotoxicity in 'Redhaven' peach buds. HortScience 1992, 27:874-876.
23. Sakamoto D., Nakamura Y., Sugiura H., Sugiura T., Asakura T., Yokoyama M., Moriguchi T. Effect of 9-hydroxy-10-oxo-12(Z),15(Z)-octadecasadienoic acid (KODA) on endodormancy breaking in flower buds of Japanese pear. HortScience 2010, 45:1470-1474.
24. Sugiura T., Honjo H. The effects of temperature on endodormancy completion in Japanese pear (Pyrus pyrifolia Nakai) and modeling the relationship. J. Agric. Meteorol. 1997, 53:285-290. (in Japanese with English summary).
25. Sugiura T., Kuroda H., Sugiura H. Influence of the current status of global warming on fruit tree growth in Japan. Hortic. Res. (Japan) 2007, 6:257-263. (in Japanese with English summary).
26. Ubi B.E., Sakamoto D., Ban Y., Ito A., Nakajima I., Takemura Y., Tamura F., Saito T., Moriguchi T. Molecular cloning of dormancy-associated MADS-box gene homologs and characterization during seasonal endodormancy transitional phases in Japanese pear. J. Am. Soc. Hortic. Sci. 2010, 135:174-182.
27. Wan C., Wilkins T.A. A modified hot borate method significantly enhances the yield of high-quality RNA from cotton (Gossypium hirsutum L.). Anal. Biochem. 1994, 223:7-12.
28. Wareing P.F. Photoperiodism in woody plants. Annu. Rev. Plant Physiol. 1956, 7:191-214.
29. Yamamoto R.R., Katsumi-Horigane A., Yoshida M., Sekozawa Y., Sugaya S., Gemma H. Floral primordial necrosis incidence in mixed buds of Japanese pear (Pyrus pyrifolia (Burm.) Nakai var. culta) 'Housui' grown under mild winter conditions and the possible relation with water dynamics. J. Jpn. Soc. Hortic. Sci. 2010, 79:246-257.
30. Yamane H., Kashiwa Y., Ooka T., Tao R., Yonemori K. Suppression subtractive hybridization and differential screening reveals endodormancy-associated expression of an SVP/AGL24-type MADS-box gene in lateral vegetative buds of Japanese apricot. J. Am. Soc. Hortic. Sci. 2008, 133:708-716.