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Volumn 7, Issue 9, 2012, Pages

High Prevalence of Shared International Type 53 among Mycobacterium tuberculosis Complex Strains in Retreated Patients from Côte d'Ivoire

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CLADISTICS; CONTROLLED STUDY; COTE D'IVOIRE; GENE ASSIGNMENT; GENE CLUSTER; GENETIC ANALYSIS; GENETIC DATABASE; GENETIC VARIABILITY; GENOTYPING TECHNIQUE; HUMAN; INTERMETHOD COMPARISON; MYCOBACTERIUM AFRICANUM; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; PREVALENCE; SHARED INTERNATIONAL TYPE 53; SITVIT SPOLDB4 DATABASE; SPOLIGOTYPING; SPUTUM ANALYSIS; STRAIN DIFFERENCE; VARIABLE NUMBER OF TANDEM REPEAT;

EID: 84866511745     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0045363     Document Type: Article
Times cited : (18)

References (33)
  • 1
    • 79955103273 scopus 로고    scopus 로고
    • World Health Organization, WHO report 2011. World Health Organization. Geneva, Switzerland
    • World Health Organization (2011) Global tuberculosis control. WHO report 2011. World Health Organization. Geneva, Switzerland.
    • (2011) Global tuberculosis control
  • 2
  • 3
    • 0025952233 scopus 로고
    • Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis
    • van Soolingen D, Hermans PW, de Haas PE, Soll DR, van Embden JD, (1991) Occurrence and stability of insertion sequences in Mycobacterium tuberculosis complex strains: evaluation of an insertion sequence-dependent DNA polymorphism as a tool in the epidemiology of tuberculosis. J. Clin. Microbiol. 29: 2578-2586.
    • (1991) J. Clin. Microbiol , vol.29 , pp. 2578-2586
    • van Soolingen, D.1    Hermans, P.W.2    de Haas, P.E.3    Soll, D.R.4    van Embden, J.D.5
  • 4
    • 0027498478 scopus 로고
    • Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology
    • van Embden JD, Cave MD, Crawford JT, Dale JW, Eisenach KD, et al. (1993) Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology. J. Clin. Microbiol. 31: 406-409.
    • (1993) J. Clin. Microbiol , vol.31 , pp. 406-409
    • van Embden, J.D.1    Cave, M.D.2    Crawford, J.T.3    Dale, J.W.4    Eisenach, K.D.5
  • 5
    • 0030911908 scopus 로고    scopus 로고
    • Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology
    • Kamerbeek J, Schouls L, Kolk A, van Agterveld M, van Soolingen D, et al. (1997) Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology. J. Clin. Microbiol 35: 907-914.
    • (1997) J. Clin. Microbiol , vol.35 , pp. 907-914
    • Kamerbeek, J.1    Schouls, L.2    Kolk, A.3    van Agterveld, M.4    van Soolingen, D.5
  • 6
    • 0030691063 scopus 로고    scopus 로고
    • Identification of novel intergenic repetitive units in a mycobacterial two-component system operon
    • Supply P, Magdalena J, Himpens S, Locht C, (1997) Identification of novel intergenic repetitive units in a mycobacterial two-component system operon. Mol. Microbiol. 26(5): 991-1003.
    • (1997) Mol. Microbiol , vol.26 , Issue.5 , pp. 991-1003
    • Supply, P.1    Magdalena, J.2    Himpens, S.3    Locht, C.4
  • 7
    • 0034018329 scopus 로고    scopus 로고
    • Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome
    • Supply P, Mazars E, Lesjean S, Vincent V, Gicquel B, et al. (2000) Variable human minisatellite-like regions in the Mycobacterium tuberculosis genome. Mol. Microbiol. 36(3): 762-771.
    • (2000) Mol. Microbiol , vol.36 , Issue.3 , pp. 762-771
    • Supply, P.1    Mazars, E.2    Lesjean, S.3    Vincent, V.4    Gicquel, B.5
  • 8
    • 30744460678 scopus 로고    scopus 로고
    • Global phylogeny of Mycobacterium tuberculosis based on a single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set
    • Filliol I, Motiwala AS, Cavatore M, Qi W, Hazbón MH, et al. (2006) Global phylogeny of Mycobacterium tuberculosis based on a single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set. J Bacteriol 188(2): 759-772.
    • (2006) J Bacteriol , vol.188 , Issue.2 , pp. 759-772
    • Filliol, I.1    Motiwala, A.S.2    Cavatore, M.3    Qi, W.4    Hazbón, M.H.5
  • 9
    • 29744433066 scopus 로고    scopus 로고
    • Single-nucleotide polymorphism-based population genetic analysis of Mycobacterium tuberculosis strains from 4 geographic sites
    • Gutacker MM, Mathema B, Soini H, Shashkina E, Kreiswirth BN, et al. (2006) Single-nucleotide polymorphism-based population genetic analysis of Mycobacterium tuberculosis strains from 4 geographic sites. J Infect Dis 193(1): 121-128.
    • (2006) J Infect Dis , vol.193 , Issue.1 , pp. 121-128
    • Gutacker, M.M.1    Mathema, B.2    Soini, H.3    Shashkina, E.4    Kreiswirth, B.N.5
  • 10
    • 35348847064 scopus 로고    scopus 로고
    • SNP genotyping: technologies and biomedical applications
    • Kim S, Misra A, (2007) SNP genotyping: technologies and biomedical applications. Annu. Rev. Biomed. Eng. 9: 289-320.
    • (2007) Annu. Rev. Biomed. Eng , vol.9 , pp. 289-320
    • Kim, S.1    Misra, A.2
  • 12
    • 34247152126 scopus 로고    scopus 로고
    • Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development
    • Gagneux S, Small PM, (2007) Global phylogeography of Mycobacterium tuberculosis and implications for tuberculosis product development. Lancet Infect. Dis. 7: 328-337.
    • (2007) Lancet Infect. Dis , vol.7 , pp. 328-337
    • Gagneux, S.1    Small, P.M.2
  • 13
    • 0032802792 scopus 로고    scopus 로고
    • Comparison of Methods Based on Different Molecular Epidemiological Markers for Typing of Mycobacterium tuberculosis Complex Strains: Interlaboratory Study of Discriminatory Power and Reproducibility
    • Kremer K, van Soolingen D, Frothingham R, Haas WH, Hermans PWM, et al. (1999) Comparison of Methods Based on Different Molecular Epidemiological Markers for Typing of Mycobacterium tuberculosis Complex Strains: Interlaboratory Study of Discriminatory Power and Reproducibility. J Clin Microbiol 37(8): 2607-2618.
    • (1999) J Clin Microbiol , vol.37 , Issue.8 , pp. 2607-2618
    • Kremer, K.1    van Soolingen, D.2    Frothingham, R.3    Haas, W.H.4    Hermans, P.W.M.5
  • 14
    • 8644255885 scopus 로고    scopus 로고
    • Characterization of ancestral Mycobacterium tuberculosis by multiple genetic markers and proposal of genotyping strategy
    • Sun YJ, Lee AS, Ng ST, Ravindran S, Kremer K, et al. (2004) Characterization of ancestral Mycobacterium tuberculosis by multiple genetic markers and proposal of genotyping strategy. J. Clin. Microbiol. 42: 5058-5064.
    • (2004) J. Clin. Microbiol , vol.42 , pp. 5058-5064
    • Sun, Y.J.1    Lee, A.S.2    Ng, S.T.3    Ravindran, S.4    Kremer, K.5
  • 15
    • 13844276550 scopus 로고    scopus 로고
    • Evaluation of a two-step approach for large-scale, prospective genotyping of Mycobacterium tuberculosis isolates in the United States
    • Cowan LS, Diem L, Monson T, Wand P, Temporado D, et al. (2005) Evaluation of a two-step approach for large-scale, prospective genotyping of Mycobacterium tuberculosis isolates in the United States. J. Clin. Microbiol. 43: 688-695.
    • (2005) J. Clin. Microbiol , vol.43 , pp. 688-695
    • Cowan, L.S.1    Diem, L.2    Monson, T.3    Wand, P.4    Temporado, D.5
  • 16
    • 84874776544 scopus 로고    scopus 로고
    • MIRU-VNTR genotyping of clinical strains of Mycobacterium tuberculosis isolated in new TB cases in Abidjan
    • N'guessan K, Ekaza E, Aka N, Nahoua I, Baudryard A, et al. (2008) MIRU-VNTR genotyping of clinical strains of Mycobacterium tuberculosis isolated in new TB cases in Abidjan. J. Pharm. Biol. Sci. 9(2): 53-63.
    • (2008) J. Pharm. Biol. Sci , vol.9 , Issue.2 , pp. 53-63
    • N'guessan, K.1    Ekaza, E.2    Aka, N.3    Nahoua, I.4    Baudryard, A.5
  • 17
    • 0034796701 scopus 로고    scopus 로고
    • Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units
    • Supply P, Lesjean S, Savine E, Kremer K, van Soolingen D, et al. (2001) Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive units. J. Clin. Microbiol. 39: 3563-3571.
    • (2001) J. Clin. Microbiol , vol.39 , pp. 3563-3571
    • Supply, P.1    Lesjean, S.2    Savine, E.3    Kremer, K.4    van Soolingen, D.5
  • 18
    • 33646227714 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology
    • Brudey K, Driscoll JR, Rigout L, Prodinger WM, Gori A, et al. (2006) Mycobacterium tuberculosis complex genetic diversity: mining the fourth international spoligotyping database (SpolDB4) for classification, population genetics and epidemiology. BMC Microbiol. 6: 23.
    • (2006) BMC Microbiol , vol.6 , pp. 23
    • Brudey, K.1    Driscoll, J.R.2    Rigout, L.3    Prodinger, W.M.4    Gori, A.5
  • 19
    • 77954285106 scopus 로고    scopus 로고
    • MIRU-VNTRplus: a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria
    • Weniger T, Krawczyk J, Supply P, Niemann S, Harmsen D, (2010) MIRU-VNTRplus: a web tool for polyphasic genotyping of Mycobacterium tuberculosis complex bacteria. Nucleic Acids Res 38Suppl: W326-33.
    • (2010) Nucleic Acids Res , vol.38
    • Weniger, T.1    Krawczyk, J.2    Supply, P.3    Niemann, S.4    Harmsen, D.5
  • 20
    • 46749114975 scopus 로고    scopus 로고
    • Evaluation and user-strategy of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates
    • Allix-Béguec C, Harmsen D, Weniger T, Supply P, Niemann S, (2008) Evaluation and user-strategy of MIRU-VNTRplus, a multifunctional database for online analysis of genotyping data and phylogenetic identification of Mycobacterium tuberculosis complex isolates. J Clin Microbiol. 46(8): 2692-9.
    • (2008) J Clin Microbiol , vol.46 , Issue.8 , pp. 2692-2699
    • Allix-Béguec, C.1    Harmsen, D.2    Weniger, T.3    Supply, P.4    Niemann, S.5
  • 21
  • 22
    • 65249155889 scopus 로고    scopus 로고
    • Use of spoligotyping and large sequence polymorphisms to study the population structure of the Mycobacterium tuberculosis complex in a cohort study of consecutive smear-positive tuberculosis cases in The Gambia
    • de Jong BC, Antonio M, Awine T, Ogungbemi K, de Jong YP, et al. (2009) Use of spoligotyping and large sequence polymorphisms to study the population structure of the Mycobacterium tuberculosis complex in a cohort study of consecutive smear-positive tuberculosis cases in The Gambia. J Clin Microbiol 47: 994-1001.
    • (2009) J Clin Microbiol , vol.47 , pp. 994-1001
    • de Jong, B.C.1    Antonio, M.2    Awine, T.3    Ogungbemi, K.4    de Jong, Y.P.5
  • 23
    • 33947259127 scopus 로고    scopus 로고
    • First Molecular Epidemiology Study of Mycobacterium tuberculosis in Burkina Faso
    • Godreuil S, Torres G, Terru D, F Chevenet, Diagbouga S, et al. (2007) First Molecular Epidemiology Study of Mycobacterium tuberculosis in Burkina Faso. J Clin Microbiol. 45: 921-927.
    • (2007) J Clin Microbiol , vol.45 , pp. 921-927
    • Godreuil, S.1    Torres, G.2    Terru, D.3    Chevenet, F.4    Diagbouga, S.5
  • 24
    • 79960147524 scopus 로고    scopus 로고
    • Genotypic Diversity and Drug Susceptibility Patterns Among M. tuberculosis Complex Isolates from South-Western Ghana PLoS ONE
    • Yeboah-Manu D, Asante-Poku A, Bodmer T, Stucki D, Koram K, et al. (2011) Genotypic Diversity and Drug Susceptibility Patterns Among M. tuberculosis Complex Isolates from South-Western Ghana PLoS ONE. 6(7): e21906.
    • (2011) , vol.6 , Issue.7
    • Yeboah-Manu, D.1    Asante-Poku, A.2    Bodmer, T.3    Stucki, D.4    Koram, K.5
  • 25
    • 46749131510 scopus 로고    scopus 로고
    • High genetic diversity among Mycobacterium tuberculosis complex strains from Sierra Leone, BMC Microbiology
    • Homolka S, Post E, Oberhauser B, George AG, Westman L, et al. (2008) High genetic diversity among Mycobacterium tuberculosis complex strains from Sierra Leone, BMC Microbiology. 8: 103.
    • (2008) , vol.8 , pp. 103
    • Homolka, S.1    Post, E.2    Oberhauser, B.3    George, A.G.4    Westman, L.5
  • 26
    • 62349116868 scopus 로고    scopus 로고
    • First Molecular Epidemiological study of tuberculosis in Benin Int J tuberc Lung Dis
    • Affolabi D, Anyo G, Faïhun F, Sanoussi N, Shamputa IC, et al. (2009) First Molecular Epidemiological study of tuberculosis in Benin Int J tuberc Lung Dis. 13: 317-22.
    • (2009) , vol.13 , pp. 317-322
    • Affolabi, D.1    Anyo, G.2    Faïhun, F.3    Sanoussi, N.4    Shamputa, I.C.5
  • 27
    • 77954571687 scopus 로고    scopus 로고
    • Genetic and diversity of Mycobacterium tuberculosis Complex in Jos, Nigeria
    • Ani A, Bruvik T, Okoh Y, Agaba P, Agbaje O, et al. (2010) Genetic and diversity of Mycobacterium tuberculosis Complex in Jos, Nigeria. BMC Infectious Diseases 10: 189.
    • (2010) BMC Infectious Diseases , vol.10 , pp. 189
    • Ani, A.1    Bruvik, T.2    Okoh, Y.3    Agaba, P.4    Agbaje, O.5
  • 28
    • 66749130814 scopus 로고    scopus 로고
    • High diversity of Mycobacterium tuberculosis Genotypes in South Africa and preponderance of mixed infections among ST53 isolates
    • Stavrum R, Mphahlele M, Ovreås K, Muthivhi T, Fourie PB, et al. (2009) High diversity of Mycobacterium tuberculosis Genotypes in South Africa and preponderance of mixed infections among ST53 isolates. J. Clin. Microbiol. 47: 1848-1856.
    • (2009) J. Clin. Microbiol , vol.47 , pp. 1848-1856
    • Stavrum, R.1    Mphahlele, M.2    Ovreås, K.3    Muthivhi, T.4    Fourie, P.B.5
  • 29
    • 84859918731 scopus 로고    scopus 로고
    • Mycobacterium tuberculosis spoligotypes that may derive from mixed strain infections are revealed by a novel computational approach
    • Lazzarini LCO, Rosenfeld J, Huard RC, Hill V, Lapa JR, et al. (2012) Mycobacterium tuberculosis spoligotypes that may derive from mixed strain infections are revealed by a novel computational approach. Infect. Genet. Evol. 12: 798-806.
    • (2012) Infect. Genet. Evol , vol.12 , pp. 798-806
    • Lazzarini, L.C.O.1    Rosenfeld, J.2    Huard, R.C.3    Hill, V.4    Lapa, J.R.5
  • 31
    • 78149243438 scopus 로고    scopus 로고
    • Mycobacterium africanum-Review of an Important Cause of Human Tuberculosis in West Africa
    • de Jong BC, Antonio M, Gagneux S, (2010) Mycobacterium africanum-Review of an Important Cause of Human Tuberculosis in West Africa. PLoS Negl Trop Dis 4(9): e744.
    • (2010) PLoS Negl Trop Dis , vol.4 , Issue.9
    • de Jong, B.C.1    Antonio, M.2    Gagneux, S.3
  • 32
    • 0344806284 scopus 로고    scopus 로고
    • Evolution and clonal traits of Mycobacterium tuberculosis complex in Guinea-Bissau
    • Kallenius G, Koivula T, Ghebremichael S, Hoffner SE, Norberg R, et al. (1999) Evolution and clonal traits of Mycobacterium tuberculosis complex in Guinea-Bissau. J Clin Microbiol. 37: 3872-3878.
    • (1999) J Clin Microbiol , vol.37 , pp. 3872-3878
    • Kallenius, G.1    Koivula, T.2    Ghebremichael, S.3    Hoffner, S.E.4    Norberg, R.5
  • 33
    • 1542298271 scopus 로고    scopus 로고
    • Genetic characterization of the Guinea-Bissau family of Mycobacterium tuberculosis complex strains
    • Koivula T, Ekman M, Leitner T, Lofdahl S, Ghebremicahel S, et al. (2004) Genetic characterization of the Guinea-Bissau family of Mycobacterium tuberculosis complex strains. Microbes Infect. 6: 272-278.
    • (2004) Microbes Infect , vol.6 , pp. 272-278
    • Koivula, T.1    Ekman, M.2    Leitner, T.3    Lofdahl, S.4    Ghebremicahel, S.5


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