Detergent selection for enhanced extraction of membrane proteins

Protein Expression and Purification

Volumn 86, Issue 1, 2012, Pages 12-20

  Arachea, Buenafe T ^a   Sun, Zhen ^a   Potente, Nina ^a   Malik, Radhika ^a   Isailovic, Dragan ^a   Viola, Ronald E ^a  

^a UNIVERSITY OF TOLEDO   (United States)

Author keywords

Detergents; Extraction efficiency; Mass spectrometry; Membrane proteins; Surfactants

Indexed keywords

BACTERIAL PROTEIN; CYCLOHEXYL PENTYL MALTOSIDE; CYCLOHEXYL-PENTYL-MALTOSIDE; DETERGENT; DRUG DERIVATIVE; FUNGAL PROTEIN; GLUCOSIDE; MEMBRANE PROTEIN; N DECYLPHOSPHORYLCHOLINE; N-DECYLPHOSPHORYLCHOLINE; OCTYL BETA GLUCOSIDE; OCTYL-BETA-D-GLUCOSIDE; PHOSPHORYLCHOLINE; SURFACTANT;

ARTICLE; CELL MEMBRANE; CHEMISTRY; ESCHERICHIA COLI; ISOLATION AND PURIFICATION; MASS SPECTROMETRY; METHODOLOGY; PICHIA; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN DENATURATION; PROTEIN STABILITY; SOLUBILITY;

BACTERIAL PROTEINS; CELL MEMBRANE; DETERGENTS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI; FUNGAL PROTEINS; GLUCOSIDES; MEMBRANE PROTEINS; PHOSPHORYLCHOLINE; PICHIA; PROTEIN DENATURATION; PROTEIN STABILITY; SOLUBILITY; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; SURFACE-ACTIVE AGENTS;

BACTERIA (MICROORGANISMS);

EID: 84866505144     PISSN: 10465928     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pep.2012.08.016     Document Type: Article

References (44)

1. A. Krogh, B. Larsson, G. Von Heijne, and E.L. Sonnhammer Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes J. Mol. Biol. 305 2001 567 580
2. E. Wallin, and G. Von Heijne Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms Protein Sci. 7 1998 1029 1038
3. G. Von Heijne Membrane-protein topology Nat. Rev. Mol. Cell. Biol. 7 2006 909 918
4. L. Fagerberg, K. Jonasson, G. Von Heijne, M. Uhlen, and L. Berglund Prediction of the human membrane proteome Proteomics 10 2010 1141 1149
5. M.H. Keyes, D.N. Gray, K.E. Kreh, and C.R. Sanders S. Iwata, Methods and Results in Crystallization of Membrane Proteins 2003 International University Line La Jolla, CA 15 38
6. F. Walas, H. Matsumura, and B. Luisi R.K. Grisshammer, S.K. Buchanan, Structural Biology of Membrane Proteins 2006 Royal Society of Chemistry Cambridge 72 95
7. R.M. Garavito, and S. Ferguson-Miller Detergents as tools in membrane biochemistry J. Biol. Chem. 276 2001 32403 32406
8. P.A. Timmins, M. Leonhard, H.U. Weltzien, T. Wacker, and W. Welte A physical characterization of some detergents of potential use for membrane protein crystallization FEBS Lett. 238 1988 361 368
9. C. Heinz, and M. Niederweis Selective extraction and purification of a mycobacterial outer membrane protein Anal. Biochem. 285 2000 113 120
10. M.A. Churchward, R.H. Butt, J.C. Lang, K.K. Hsu, and J.R. Coorssen Enhanced detergent extraction for analysis of membrane proteomes by two-dimensional gel electrophoresis Proteome Sci. 3 2005 5
11. I. Lehner, M. Niehof, and J. Borlak An optimized method for the isolation and identification of membrane proteins Electrophoresis 24 2003 1795 1808
12. L. Oded, A.T. Lee, and D.C. Rees The funnel approach to the precrystallization production of membrane proteins J. Mol. Biol. 377 2008 62 73
13. B.M. Gorzelle, A.K. Hoffman, M.H. Keyes, D.N. Gray, D.G. Ray, and C.R. Sanders Amphipols can support the activity of a membrane enzyme J. Am. Chem. Soc. 124 2002 11594 11595
14. R. Matar-Merheb, M. Rhimi, A. Leydier, F. Huche, C. Galian, E. Desuzinges-Mandon, D. Ficheux, D. Flot, N. Aghajari, R. Kahn, A. Di Pietro, J.M. Jault, A.W. Coleman, and P. Falson Structuring detergents for extracting and stabilizing functional membrane proteins PLoS One 6 2011 e18036
15. S. Eshaghi High-throughput expression and detergent screening of integral membrane proteins Methods Mol. Biol. 498 2009 265 271
16. J.M. Vergis, M.D. Purdy, and M.C. Wiener A high-throughput differential filtration assay to screen and select detergents for membrane proteins Anal. Biochem. 407 2010 1 11
17. T. Kawate, and E. Gouaux Fluorescence-detection size-exclusion chromatography for precrystallization screening of integral membrane proteins Structure 14 2006 673 681
18. C. Ebel Sedimentation velocity to characterize surfactants and solubilized membrane proteins Methods 54 2011 56 66
19. Y. Sonoda, S. Newstead, N.J. Hu, Y. Alguel, E. Nji, K. Bels, S. Yashiro, C. Lee, J. Leung, A.D. Cameron, B. Byrne, S. Iwata, and D. Drew Benchmarking membrane protein detergent stability for improving throughput of high-resolution X-ray structures Structure 19 2011 17 25
20. T. Arnold, and D. Linke Phase separation in the isolation and purification of membrane proteins Biotechniques 43 2007 427 440
21. J.L. Cereghino, and J.M. Cregg Heterologous protein expression in the methylotrophic yeast Pichia pastoris FEMS Microbiol. Rev. 24 2000 45 66
22. J. Le Coq, H.J. An, C.B. Lebrilla, and R.E. Viola Characterization of human aspartoacylase: the brain enzyme responsible for canavan disease Biochemistry 45 2006 5878 5884
23. A. Shevchenko, H. Tomas, J. Havlis, J.V. Olsen, and M. Mann In-gel digestion for mass apectrometric characterization of proteins and proteomes Nat. Protoc. 1 2006 2856 2860
24. D. Suckau, A. Resemann, M. Schuerenberg, P. Hufnagel, J. Franzen, and A. Holle A novel MALDI LIFT-TOF/TOF mass spectrometer for proteomics Anal. Bioanal. Chem. 376 2003 952 965
25. D.N. Perkins, D.J. Pappin, and D.M. Creasy Probability-based protein identification by searching sequence databases using mass spectrometry data Electrophoresis 20 2010 3551 3567
26. M. Le Maire, P. Champeil, and J.V. Moller Interaction of membrane proteins and lipids with solubilizing detergents Biochim. Biophys. Acta 1508 2000 86 111
27. U. Kragh-Hansen, M. Le Maire, J.P. Noel, T. Gulik-Krzywicki, and J.V. Moeller Transitional steps in the solubilization of protein-containing membranes and liposomes by nonionic detergent Biochemistry 32 1993 1648 1656
28. + conduction and selectivity Science 280 1998 69 77
29. D.P. Chimento, R.J. Kadner, and M.C. Wiener The Escherichia coli outer membrane cobalamin transporter BtuB: structural analysis of calcium and substrate binding, and identification of orthologous transporters by sequence/structure conservation J. Mol. Biol. 332 2003 999 1014
30. R. Kekuda, H. Wang, W. Huang, A.M. Pajor, F.H. Leibach, L.D. Devoe, P.D. Prasad, and V. Ganapathy Primary structure and functional characteristics of a mammalian sodium-coupled high affinity dicarboxylate transporter J. Biol. Chem. 274 1999 3422 3429
31. N.C. Butzin, H.A. Owen, and M.L. Collins A new system for heterologous expression of membrane proteins: Rhodospirillum rubrum Protein Expr. Purif. 70 2009 88 94
32. X. Bai, X. Chen, A.Q. Sun, Z. Feng, K. Hou, and B. Fu Membrane topology structure of human high-affinity, sodium-dependent dicarboxylate transporter FASEB J. 21 2007 2409 2417
33. Z.R. Yang, R. Thomson, P. McNeil, and R.M. Esnouf RONN: the bio-basis function neural network technique applied to the dectection of natively disordered regions in proteins Bioinformatics 21 2005 3369 3376
34. F. Stenberg, P. Chovanec, S.L. Maslen, C.V. Robinson, L.L. Ilag, and G. Von Heijne Protein complexes of the Escherichia coli cell envelope J. Biol. Chem. 280 2005 34409 34419
35. H. Michel H. Michel, Crystallization of Membrane Proteins 1991 CRC Press Boca Raton, FL 73 88
36. C.K. Engel, L. Chen, and G.G. Prive Stability of the lactose permease in detergent solutions Biochim. Biophys. Acta 1564 2002 47 56
37. M. Le Maire, S. Kwee, J.P. Andersen, and J.V. Moller Mode of interaction of polyoxyethyleneglycol detergents with membrane proteins Eur. J. Biochem. 129 1983 525 532
38. J.V. Moller, and M. Le Maire Detergent binding as a measure of hydrophobic surface area of integral membrane proteins J. Biol. Chem. 268 1993 18659 18672
39. J.H. Kleinschmidt, M.C. Wiener, and L.K. Tamm Outer membrane protein A of E. coli folds into detergent micelles, but not in the presence of monomeric detergent Protein Sci. 8 1999 2065 2071
40. D. Szklarczyk, A. Franceschini, M. Kuhn, M. Simonovic, A. Roth, P. Minguez, T. Doerks, M. Stark, J. Muller, P. Bork, L.J. Jensen, and C. von Mering The STRING database in 2011: functional interaction networks of proteins globally integrated and scored Nucleic Acids Res. 39 2010 D561 D568
41. P. Genevaux, A. Wawrzynow, M. Zylicz, C. Georgopoulos, and W.L. Kelley DjlA is a third DnaK co-chaperone of Escherichia coli, and DjlA-mediated induction of colanic acid capsule requires DjlA-DnaK interaction J. Biol. Chem. 276 2001 7906 7912
42. M. Arifuzzaman, M. Maeda, A. Itoh, K. Nishikata, C. Takita, C. Saito, T. Ara, K. Nakahigashi, H.C. Huang, A. Hirai, K. Tsuzuki, S. Nakamura, M. Altaf-Ul-Amin, T. Oshima, T. Baba, N. Yamamoto, T. Kawamura, T. Ioka-Nakamichi, M. Kitagawa, M. Tomita, S. Kanaya, C. Wada, and H. Mori Large-scale identification of protein-protein interaction of Escherichia coli K-12 Genome Res. 16 2006 686 691
43. L. Beijer, R.P. Nilsson, C. Holmberg, and L. Rutberg The glpP and glpF genes of the glycerol regulon in Bacillus subtilis J. Gen. Microbiol. 139 1993 349 359
44. R.P. Nilsson, L. Beijer, and B. Rutberg The glpT and glpQ genes of the glycerol regulon in Bacillus subtilis Microbiology 140 1994 723 730