메뉴 건너뛰기




Volumn 28, Issue 18, 2012, Pages 2366-2373

Fast and accurate read alignment for resequencing

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; COMPUTER PROGRAM; DNA SEQUENCE; GENOMICS; HIGH THROUGHPUT SEQUENCING; HUMAN; HUMAN GENOME; INDEL MUTATION; METHODOLOGY; SEQUENCE ALIGNMENT;

EID: 84866441562     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts450     Document Type: Article
Times cited : (45)

References (20)
  • 2
    • 0003573193 scopus 로고
    • A block-sorting lossless data compression algorithm
    • SRC-RR-124
    • Burrows,M. and Wheeler,D.J. (1994) A block-sorting lossless data compression algorithm. HP Labs Technical Reports, SRC-RR-124.
    • (1994) HP Labs Technical Reports
    • Burrows, M.1    Wheeler, D.J.2
  • 3
    • 79953310937 scopus 로고    scopus 로고
    • SHRiMP2: sensitive yet practical short read mapping
    • David,M. et al. (2011) SHRiMP2: sensitive yet practical short read mapping. Bioinformatics, 27, 1011-1012.
    • (2011) Bioinformatics , vol.27 , pp. 1011-1012
    • David, M.1
  • 4
    • 79955483667 scopus 로고    scopus 로고
    • A framework for variation discovery and genotyping using next-generation dna sequencing data
    • DePristo,M.A. et al. (2011) A framework for variation discovery and genotyping using next-generation dna sequencing data. Nat. Genet., 43, 491-498.
    • (2011) Nat. Genet. , vol.43 , pp. 491-498
    • DePristo, M.A.1
  • 6
    • 70450177746 scopus 로고    scopus 로고
    • BFAST: an alignment tool for large scale genome resequencing
    • Homer,N., Merriman,B. and Nelson,S.F. (2009) BFAST: an alignment tool for large scale genome resequencing. PLoS One, 4, e7767.
    • (2009) PLoS One , vol.4
    • Homer, N.1    Merriman, B.2    Nelson, S.F.3
  • 7
    • 84857145150 scopus 로고    scopus 로고
    • Art: a next-generation sequencing read simulator
    • Huang,W., Li,L.,Myers,J.R. and Marth,G.T. (2012) Art: a next-generation sequencing read simulator. Bioinformatics, 28, 593-594.
    • (2012) Bioinformatics , vol.28 , pp. 593-594
    • Huang, W.1    Li, L.2    Myers, J.R.3    Marth, G.T.4
  • 8
    • 53749083993 scopus 로고    scopus 로고
    • SeqMap: mapping massive amount of oligonucleotides to the genome
    • Jiang,H. andWong,W.H. (2008) SeqMap: mapping massive amount of oligonucleotides to the genome. Bioinformatics, 24, 2395-2396.
    • (2008) Bioinformatics , vol.24 , pp. 2395-2396
    • Jiang, H.1    Wong, W.H.2
  • 10
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with bowtie 2
    • Langmead,B.S. and Steven,L. (2012) Fast gapped-read alignment with bowtie 2. Nat. Methods, 9, 357-359.
    • (2012) Nat. Methods , vol.9 , pp. 357-359
    • Langmead, B.S.1    Steven, L.2
  • 11
    • 80054915847 scopus 로고    scopus 로고
    • A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
    • Li,H. (2011) A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data. Bioinformatics, 27, 2987-2993.
    • (2011) Bioinformatics , vol.27 , pp. 2987-2993
    • Li, H.1
  • 12
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li,H. and Durbin,R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 13
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • Li,H. and Durbin,R. (2010) Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics, 26, 589-595.
    • (2010) Bioinformatics , vol.26 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 14
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li,H. et al. (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res., 18, 1851-1858.
    • (2008) Genome Res. , vol.18 , pp. 1851-1858
    • Li, H.1
  • 15
    • 67650711615 scopus 로고    scopus 로고
    • SOAP2: an improved ultrafast tool for short read alignment
    • Li,R. et al. (2009) SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics, 25, 1966-1967.
    • (2009) Bioinformatics , vol.25 , pp. 1966-1967
    • Li, R.1
  • 16
    • 79956307251 scopus 로고    scopus 로고
    • Stampy: a statistical algorithm for sensitive and fast mapping of illumina sequence reads
    • Lunter,G. and Goodson,M. (2011) Stampy: a statistical algorithm for sensitive and fast mapping of illumina sequence reads. Genome Res., 21, 936-939.
    • (2011) Genome Res. , vol.21 , pp. 936-939
    • Lunter, G.1    Goodson, M.2
  • 17
    • 58049195681 scopus 로고    scopus 로고
    • Slidermaximum use of probability information for alignment of short sequence reads and snp detection
    • Malhis,N. et al. (2009) Slidermaximum use of probability information for alignment of short sequence reads and snp detection. Bioinformatics, 25, 6-13.
    • (2009) Bioinformatics , vol.25 , pp. 6-13
    • Malhis, N.1
  • 18
    • 77957815609 scopus 로고    scopus 로고
    • GASSST: global alignment short sequence search tool
    • Rizk,G. and Lavenier,D. (2010) GASSST: global alignment short sequence search tool. Bioinformatics, 26, 2534-2540.
    • (2010) Bioinformatics , vol.26 , pp. 2534-2540
    • Rizk, G.1    Lavenier, D.2
  • 19
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • The 1000 Genomes Project Consortium
    • The 1000 Genomes Project Consortium (2010) A map of human genome variation from population-scale sequencing. Nature, 467, 1061-1073.
    • (2010) Nature , vol.467 , pp. 1061-1073
  • 20
    • 84876895434 scopus 로고    scopus 로고
    • Faster and more accurate sequence alignment with snap
    • arXiv:1111.5572v1
    • Zaharia,M. et al. (2011) Faster and more accurate sequence alignment with snap. arXiv, arXiv:1111.5572v1.
    • (2011) arXiv
    • Zaharia, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.