메뉴 건너뛰기




Volumn 28, Issue 18, 2012, Pages 2391-2393

RIBFIND: A web server for identifying rigid bodies in protein structures and to aid flexible fitting into cryo EM maps

Author keywords

[No Author keywords available]

Indexed keywords

ESCHERICHIA COLI PROTEIN; PERIPLASMIC BINDING PROTEIN; RBSB PROTEIN, E COLI;

EID: 84866439903     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts446     Document Type: Article
Times cited : (19)

References (11)
  • 1
    • 77449087501 scopus 로고    scopus 로고
    • RigidFinder: a fast and sensitive method to detect rigid blocks in large macromolecular complexes
    • Abyzov,A. et al. (2010) RigidFinder: a fast and sensitive method to detect rigid blocks in large macromolecular complexes. Proteins, 78, 309-324.
    • (2010) Proteins , vol.78 , pp. 309-324
    • Abyzov, A.1
  • 2
    • 33646799407 scopus 로고    scopus 로고
    • Multiscale modeling of macromolecular conformational changes combining concepts from rigidity and elastic network theory
    • Ahmed,A. and Gohlke,H. (2006) Multiscale modeling of macromolecular conformational changes combining concepts from rigidity and elastic network theory. Proteins, 63, 1038-1051.
    • (2006) Proteins , vol.63 , pp. 1038-1051
    • Ahmed, A.1    Gohlke, H.2
  • 3
    • 79851514947 scopus 로고    scopus 로고
    • Exploring the spatial and temporal organization of a cell's proteome
    • Beck,M. et al. (2011) Exploring the spatial and temporal organization of a cell's proteome. J. Struct. Biol., 173, 483-496.
    • (2011) J. Struct. Biol , vol.173 , pp. 483-496
    • Beck, M.1
  • 4
    • 39749202824 scopus 로고    scopus 로고
    • HingeProt: automated prediction of hinges in protein structures
    • Emekli,U. et al. (2008) HingeProt: automated prediction of hinges in protein structures. Proteins, 70, 1219-1227.
    • (2008) Proteins , vol.70 , pp. 1219-1227
    • Emekli, U.1
  • 5
    • 34547650902 scopus 로고    scopus 로고
    • FlexOracle: predicting flexible hinges by identification of stable domains
    • Flores,S.C. and Gerstein,M.B. (2007) FlexOracle: predicting flexible hinges by identification of stable domains. BMC Bioinformatics, 8, 215.
    • (2007) BMC Bioinformatics , vol.8 , pp. 215
    • Flores, S.C.1    Gerstein, M.B.2
  • 6
    • 0035427398 scopus 로고    scopus 로고
    • Protein flexibility predictions using graph theory
    • Jacobs,D.J. et al. (2001) Protein flexibility predictions using graph theory. Proteins, 44, 150-165.
    • (2001) Proteins , vol.44 , pp. 150-165
    • Jacobs, D.J.1
  • 7
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch,W. and Sander,C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 8
    • 0019588920 scopus 로고
    • Folding units in globular proteins
    • USA
    • Lesk,A.M. and Rose,G.D. (1981) Folding units in globular proteins. Proc. Natl. Acad. Sci. USA, 78, 4304-4308.
    • (1981) Proc. Natl. Acad. Sci , vol.78 , pp. 4304-4308
    • Lesk, A.M.1    Rose, G.D.2
  • 9
    • 83755207591 scopus 로고    scopus 로고
    • Structural analysis of macromolecular assemblies by electron microscopy
    • Orlova,E.V. and Saibil,H.R. (2011) Structural analysis of macromolecular assemblies by electron microscopy. Chem. Rev., 111, 7710-7748.
    • (2011) Chem. Rev , vol.111 , pp. 7710-7748
    • Orlova, E.V.1    Saibil, H.R.2
  • 10
    • 84857033345 scopus 로고    scopus 로고
    • Finding rigid bodies in protein structures: application to flexible fitting into cryoEM maps
    • Pandurangan,A.P. and Topf,M. (2012) Finding rigid bodies in protein structures: application to flexible fitting into cryoEM maps. J. Struct. Biol., 177, 520-531.
    • (2012) J. Struct. Biol , vol.177 , pp. 520-531
    • Pandurangan, A.P.1    Topf, M.2
  • 11
    • 38949092920 scopus 로고    scopus 로고
    • Protein structure fitting and refinement guided by cryo-EM density
    • Topf,M. et al. (2008) Protein structure fitting and refinement guided by cryo-EM density. Structure, 16, 295-307.
    • (2008) Structure , vol.16 , pp. 295-307
    • Topf, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.