Intense Co-Circulation of Non-Influenza Respiratory Viruses during the First Wave of Pandemic Influenza pH1N1/2009: A Cohort Study in Reunion Island

PLoS ONE

Volumn 7, Issue 9, 2012, Pages

  Pascalis, Hervé ^a,b   Temmam, Sarah ^a,d   Turpin, Magali ^a,b   Rollot, Olivier ^c   Flahault, Antoine ^g   Carrat, Fabrice ^f   de Lamballerie, Xavier ^e   Gérardin, Patrick ^c   Dellagi, Koussay ^a,b  

^a Centre de Recherche et de Veille sur les maladies émergentes dans l'Ocean Indien CRVOI Plateforme de recherche CYROI   (France)

^b INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

^c INSERM   (France)

^d UNIVERSITÉ LYON 1   (France)

^e AIX MARSEILLE UNIVERSITY   (France)

^f SORBONNE UNIVERSITÉ   (France)

^g EHESP SCHOOL OF PUBLIC HEALTH   (France)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

2009 H1N1 INFLUENZA; ADULT; ARTICLE; COHORT ANALYSIS; CONTROLLED STUDY; CORONAVIRUS; EPIDEMIC; FEMALE; FLU LIKE SYNDROME; HERD IMMUNITY; HOUSEHOLD; HUMAN; INFLUENZA VIRUS A H1N1; MAJOR CLINICAL STUDY; MALE; MIXED INFECTION; NONHUMAN; NOSE SMEAR; POPULATION RESEARCH; RESPIRATORY VIRUS; REUNION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RHINOVIRUS; VIRUS DETECTION; VIRUS LOAD; VIRUS SHEDDING; VIRUS TRANSMISSION; VULNERABLE POPULATION; WINTER;

ADOLESCENT; ADULT; CHILD; CHILD, PRESCHOOL; COHORT STUDIES; CORONAVIRIDAE; DISEASE OUTBREAKS; FRANCE; HUMANS; IMMUNITY, HERD; INFANT; INFANT, NEWBORN; INFLUENZA A VIRUS, H1N1 SUBTYPE; PANDEMICS; POLYMERASE CHAIN REACTION; PROSPECTIVE STUDIES; RESPIRATORY TRACT INFECTIONS; RHINOVIRUS; RISK; TIME FACTORS;

HUMAN RHINOVIRUS SP.; ORTHOMYXOVIRIDAE;

EID: 84866336102     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0044755     Document Type: Article

References (42)

1. Tregoning JS, Schwarze J, (2010) Respiratory viral infections in infants: causes, clinical symptoms, virology, and immunology. Clin Microbiol Rev 23: 74-98.
2. Graham NM, (1990) The epidemiology of acute respiratory infections in children and adults: a global perspective. Epidemiol Rev 12: 149-178.
3. Freymuth F, Vabret A, Cuvillon-Nimal D, Simon S, Dina J, et al. (2006) Comparison of multiplex PCR assays and conventional techniques for the diagnostic of respiratory virus infections in children admitted to hospital with an acute respiratory illness. J Med Virol 78: 1498-1504.
4. Li H, McCormac MA, Estes RW, Sefers SE, Dare RK, et al. (2007) Simultaneous detection and high-throughput identification of a panel of RNA viruses causing respiratory tract infections. J Clin Microbiol 45: 2105-2109.
5. Wang W, Ren P, Sheng J, Mardy S, Yan H, et al. (2009) Simultaneous detection of respiratory viruses in children with acute respiratory infection using two different multiplex reverse transcription-PCR assays. J Virol Methods 162: 40-45.
6. Brunstein JD, Cline CL, McKinney S, Thomas E, (2008) Evidence from multiplex molecular assays for complex multipathogen interactions in acute respiratory infections. Journal of clinical microbiology 46: 97-102.
7. Dawood FS, Jain S, Finelli L, Shaw MW, Lindstrom S, et al. (2009) Emergence of a novel swine-origin influenza A (H1N1) virus in humans. N Engl J Med 360: 2605-2615.
8. D'Ortenzio E, Renault P, Jaffar-Bandjee MC, Gauzere BA, Lagrange-Xelot M, et al. (2010) A review of the dynamics and severity of the pandemic A(H1N1) influenza virus on Reunion island, 2009. Clin Microbiol Infect 16: 309-316.
9. Dellagi K, Rollot O, Temmam S, Salez N, Guernier V, et al. (2011) Pandemic Influenza due to pH1N1/2009 virus: estimation of infection burden in Reunion Island through a prospective serosurvey, austral winter 2009. PloS one 6: e25738.
10. Nougairede A, Ninove L, Zandotti C, De Lamballerie X, Gazin C, et al. (2009) Point of care strategy for rapid diagnosis of novel A/H1N1 Influenza virus. PLoS Curr 1: RRN1039.
11. Follin P, Lindqvist A, Nystrom K, Lindh M (2009) A variety of respiratory viruses found in symptomatic travellers returning from countries with ongoing spread of the new Influenza A(H1N1)v virus strain. Eurosurveillance 14.
12. Nisii C, Meschi S, Selleri M, Bordi L, Castilletti C, et al. (2010) Frequency of detection of upper respiratory tract viruses in patients tested for pandemic H1N1/09 viral infection. Journal of clinical microbiology 48: 3383-3385.
13. Ninove L, Nougairede A, Gazin C, Thirion L, Delogu I, et al. (2011) RNA and DNA bacteriophages as molecular diagnosis controls in clinical virology: a comprehensive study of more than 45,000 routine PCR tests. PLoS One 6: e16142.
14. Ninove L, Gazin C, Gould EA, Nougairede A, Flahault A, et al. (2010) A simple method for molecular detection of Swine-origin and human-origin influenza a virus. Vector borne and zoonotic diseases 10: 237-240.
15. Gharabaghi F, Hawan A, Drews SJ, Richardson SE, (2011) Evaluation of multiple commercial molecular and conventional diagnostic assays for the detection of respiratory viruses in children. Clinical microbiology and infection: the official publication of the European Society of Clinical Microbiology and Infectious Diseases 17: 1900-1906.
16. Larios OE, Coleman BL, Drews SJ, Mazzulli T, Borgundvaag B, et al. (2011) Self-collected mid-turbinate swabs for the detection of respiratory viruses in adults with acute respiratory illnesses. PloS one 6: e21335.
17. Bibby DF, McElarney I, Breuer J, Clark DA, (2011) Comparative evaluation of the Seegene Seeplex RV15 and real-time PCR for respiratory virus detection. Journal of Medical Virology 83: 1469-1475.
18. Kim SR, Ki CS, Lee NY (2008) Rapid detection and identification of 12 respiratory viruses using a dual priming oligonucleotide system-based multiplex PCR assay. J Virol Methods.
19. Drummond AJ, Ashton B, Buxton S, Cheung M, Cooper A, et al. (2010) Geneious v5.3.
20. Hobson D, Curry RL, Beare AS, Ward-Gardner A, (1972) The role of serum haemagglutination-inhibiting antibody in protection against challenge infection with influenza A2 and B viruses. The Journal of hygiene 70: 767-777.
21. BVS (2010) Bulletin de veille sanitaire. Cire de La Réunion et Mayotte Mars 03.
22. Stensballe LG, Devasundaram JK, Simoes EA, (2003) Respiratory syncytial virus epidemics: the ups and downs of a seasonal virus. The Pediatric infectious disease journal 22: S21-32.
23. Li J, Wang Z, Gonzalez R, Xiao Y, Zhou H, et al. (2012) Prevalence of human metapneumovirus in adults with acute respiratory tract infection in Beijing, China. The Journal of infection 64: 96-103.
24. Sapin G, Michault A, Simac C, (2001) Seasonal trends of respiratory syncytial virus infections on Reunion Island gathering data among hospitalized children. Bulletin de la Societe de pathologie exotique 94: 3-4.
25. Razanajatovo NH, Richard V, Hoffmann J, Reynes JM, Razafitrimo GM, et al. (2011) Viral etiology of influenza-like illnesses in Antananarivo, Madagascar, July 2008 to June 2009. PloS one 6: e17579.
26. Laguna-Torres VA, Gomez J, Aguilar PV, Ampuero JS, Munayco C, et al. (2010) Changes in the viral distribution pattern after the appearance of the novel Influenza A H1N1 (pH1N1) virus in Influenza-like illness patients in Peru. PLoS One 5: e11719.
27. To KK, Chan KH, Li IW, Tsang TY, Tse H, et al. (2010) Viral load in patients infected with pandemic H1N1 2009 Influenza A virus. Journal of medical virology 82: 1-7.
28. Suess T, Buchholz U, Dupke S, Grunow R, an der Heiden M, et al. (2010) Shedding and transmission of novel Influenza virus A/H1N1 infection in households-Germany, 2009. American journal of epidemiology 171: 1157-1164.
29. Waiboci LW, Lebo E, Williamson JM, Mwiti W, Kikwai GK, et al. (2011) Viral shedding in patients infected with pandemic Influenza A (H1N1) virus in Kenya, 2009. PloS one 6.
30. Esposito S, Daleno C, Baldanti F, Scala A, Campanini G, et al. (2011) Viral shedding in children infected by pandemic A/H1N1/2009 Influenza virus. Virology journal 8.
31. Linde A, Rotzen-Ostlund M, Zweygberg-Wirgart B, Rubinova S, Brytting M, (2009) Does viral interference affect spread of Influenza? Eurosurveillance 14: 2-4.
32. Casalegno JS, Ottmann M, Duchamp MB, Escuret V, Billaud G, et al. (2010) Rhinoviruses delayed the circulation of the pandemic influenza A (H1N1) 2009 virus in France. Clinical Microbiology and Infection 16: 326-329.
33. Anestad G, Nordbo SA, (2011) Virus interference. Did rhinoviruses activity hamper the progress of the 2009 influenza A (H1N1) pandemic in Norway? Medical hypotheses 77: 1132-1134.
34. Gonzalez JP, Guiserix M, Sauvage F, Guitton JS, Vidal P, et al. (2010) Pathocenosis: a holistic approach to disease ecology. EcoHealth 7: 237-241.
35. Barton ES, White DW, Cathelyn JS, Brett-McClellan KA, Engle M, et al. (2007) Herpesvirus latency confers symbiotic protection from bacterial infection. Nature 447: 326-329.
36. Ford ES, Puronen CE, Sereti I, (2009) Immunopathogenesis of asymptomatic chronic HIV Infection: the calm before the storm. Current opinion in HIV and AIDS 4: 206-214.
37. Abu-Raddad LJ, Patnaik P, Kublin JG, (2006) Dual infection with HIV and malaria fuels the spread of both diseases in sub-Saharan Africa. Science 314: 1603-1606.
38. Pawlowski A, Jansson M, Skold M, Rottenberg ME, Kallenius G, (2012) Tuberculosis and HIV co-infection. PLoS pathogens 8: e1002464.
39. Graham AL, Cattadori IM, Lloyd-Smith JO, Ferrari MJ, Bjornstad ON, (2007) Transmission consequences of coinfection: cytokines writ large? Trends in parasitology 23: 284-291.
40. Yang XH, Yao Y, Chen MF, Yang X, Xie YD, et al. (2012) Etiology and clinical characteristics of Influenza-Like Illness (ILI) in outpatients in Beijing, June 2010 to May 2011. PloS one 7.
41. Flasche S, Hens N, Boelle PY, Mossong J, van Ballegooijen WM, et al. (2011) Different transmission patterns in the early stages of the Influenza A(H1N1)v pandemic: a comparative analysis of 12 European countries. Epidemics 3: 125-133.
42. Schnepf N, Resche-Rigon M, Chaillon A, Scemla A, Gras G, et al. (2011) High burden of non-influenza viruses in influenza-like illness in the early weeks of H1N1v epidemic in France. PloS one 6: e23514.