Genome sequence of Aerococcus viridans LL1

Journal of Bacteriology

Volumn 194, Issue 15, 2012, Pages 4143-

  Qin, Nan ^a   Zheng, Beiwen ^a   Yang, Fengling ^a   Chen, Yanfei ^a   Guo, Jing ^a   Hu, Xinjun ^a   Li, Lanjuan ^a  

^a ZHEJIANG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AEROCOCCUS VIRIDANS; AMBIENT AIR; ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATE; DUST; GENE SEQUENCE; NONHUMAN; PRIORITY JOURNAL;

AEROCOCCUS; DNA, BACTERIAL; ENVIRONMENTAL MICROBIOLOGY; GENOME, BACTERIAL; HOSPITALS; HUMANS; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA;

AEROCOCCUS VIRIDANS; POSIBACTERIA;

EID: 84866315650     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00786-12     Document Type: Article

References (13)

1. Benson G. 1999. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27:573-580.
2. Delcher AL, Bratke KA, Powers EC, Salzberg SL. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23:673-679.
3. Gopalachar A, Akins RL, Davis WR, Siddiqui AA. 2004. Urinary tract infection caused by Aerococcus viridans, a case report. Med. Sci. Monitor 10:CS73-CS75.
4. Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M. 2004. The KEGG resource for deciphering the genome. Nucleic Acids Res. 32:D277-D280.
5. Kerbaugh MA, Evans JB. 1968. Aerococcus viridans in the hospital environment. Appl. Microbiol. 16:519-523.
6. Lagesen K, et al. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
7. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-964.
8. Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M. 2007. KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 35:W182-W185.
9. Nasoodi A, Ali AG, Gray WJ, Hedderwick SA. 2008. Spondylodiscitis due to Aerococcus viridans. J. Med. Microbiol. 57:532-533.
10. Popescu GA, Benea E, Mitache E, Piper C, Horstkotte D. 2005. An unusual bacterium, Aerococcus viridans, and four cases of infective endocarditis. J. Heart Valve Dis. 14:317-319.
11. Szabados F, Woloszyn J, Richter C, Kaase M, Gatermann S. 2010. Identification of molecularly defined Staphylococcus aureus strains using matrix-assisted laser desorption/ionization time of flight mass spectrometry and the Biotyper 2.0 database. J. Med. Microbiol. 59:787-790.
12. Tatusov RL, Galperin MY, Natale DA, Koonin EV. 2000. The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 28:33-36.
13. Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.