Draft genome sequence of the sponge-associated strain Bacillus atrophaeus C89, a potential producer of marine drugs

Journal of Bacteriology

Volumn 194, Issue 16, 2012, Pages 4454-4454

  Liu, Fang ^a   Sun, Wei ^a   Su, Fei ^a   Zhou, Kang ^a   Li, Zhiyong ^a  

^a Shanghai Jiao Tong University   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACILLAMIDE C; CYTOSINE; GUANINE; NATURAL PRODUCT; NEOBACILLAMIDE A; NONRIBOSOMAL PEPTIDE SYNTHETASE; NOVOBIOCIN; RIBOSOME RNA; STREPTOMYCIN; TRANSFER RNA; TRANSPOSASE; UNCLASSIFIED DRUG; VANCOMYCIN;

AMINO ACID METABOLISM; AMINO ACID TRANSPORT; BACILLUS ATROPHAEUS C89; BACTERIAL STRAIN; BIOLOGICAL FUNCTIONS; CELL FUNCTION; CELL MIGRATION; CELL MOTILITY; DYSIDEA; GENE SEQUENCE; NONHUMAN; NOTE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SIGNAL TRANSDUCTION;

ANIMALS; BACILLUS; BIOLOGICAL AGENTS; DNA, BACTERIAL; DYSIDEA; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; PEPTIDE BIOSYNTHESIS, NUCLEIC ACID-INDEPENDENT; PEPTIDE SYNTHASES; SEQUENCE ANALYSIS, DNA;

BACILLUS ATROPHAEUS; DYSIDEA AVARA;

EID: 84866313588     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00835-12     Document Type: Note

References (9)

1. Delcher AL, et al. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23:673-679.
2. Jin L, et al. 2011. Bacillamide C production by the optimized cultivation of the Bacillus atrophaeus strain C89 associated the South China Sea sponge Dysidea avara. Proc. Biochem. 46:1153-1159.
3. Lagesen K, et al. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
4. Li R, et al. 2010. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res. 20:265-272.
5. Ogata H, et al. 1998. Computation with the KEGG pathway database. Biosystems 47:119-128.
6. Preston GM. 2007. Metropolitan microbes: type III secretion in multihost symbionts. Cell Host Microbe 2:291-294.
7. Tatusov R, et al. 2003. The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4:41.
8. Taylor MW, et al. 2007. Sponge-associated microorganisms: evolution, ecology, and biotechnological potential. Microbiol. Mol. Biol. Rev. 71:295-347.
9. Yu L, et al. 2009. Neobacillamide A, a novel thiazole-containing alkaloid from the marine bacterium Bacillus vallismortis C89, associated with South China Sea sponge Dysidea avara. Helv. Chim. Acta 92:607-612.