메뉴 건너뛰기




Volumn 8, Issue 8, 2012, Pages

Genetics and Regulatory Impact of Alternative Polyadenylation in Human B-Lymphoblastoid Cells

Author keywords

[No Author keywords available]

Indexed keywords

3' CIS REGULATORY SEQUENCE ELEMENT; INTERFERON REGULATORY FACTOR 5; MESSENGER RNA; MICRORNA; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

EID: 84866167339     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1002882     Document Type: Article
Times cited : (41)

References (71)
  • 1
    • 40849126953 scopus 로고    scopus 로고
    • Integrating global gene expression analysis and genetics
    • Farber CR, Lusis AJ, (2008) Integrating global gene expression analysis and genetics. Adv Genet 60: 571-601.
    • (2008) Adv Genet , vol.60 , pp. 571-601
    • Farber, C.R.1    Lusis, A.J.2
  • 2
    • 33750204290 scopus 로고    scopus 로고
    • Genetics of global gene expression
    • Rockman MV, Kruglyak L, (2006) Genetics of global gene expression. Nat Rev Genet 7: 862-872.
    • (2006) Nat Rev Genet , vol.7 , pp. 862-872
    • Rockman, M.V.1    Kruglyak, L.2
  • 4
    • 70249134919 scopus 로고    scopus 로고
    • Molecular networks as sensors and drivers of common human diseases
    • Schadt EE, (2009) Molecular networks as sensors and drivers of common human diseases. Nature 461: 218-223.
    • (2009) Nature , vol.461 , pp. 218-223
    • Schadt, E.E.1
  • 5
    • 57649124192 scopus 로고    scopus 로고
    • Reverse engineering the genotype-phenotype map with natural genetic variation
    • Rockman MV, (2008) Reverse engineering the genotype-phenotype map with natural genetic variation. Nature 456: 738-744.
    • (2008) Nature , vol.456 , pp. 738-744
    • Rockman, M.V.1
  • 6
    • 55449112450 scopus 로고    scopus 로고
    • High-resolution mapping of expression-QTLs yields insight into human gene regulation
    • Veyrieras JB, Kudaravalli S, Kim SY, Dermitzakis ET, Gilad Y, et al. (2008) High-resolution mapping of expression-QTLs yields insight into human gene regulation. PLoS Genet 4: e1000214 doi:10.1371/journal.pgen.1000214.
    • (2008) PLoS Genet , vol.4
    • Veyrieras, J.B.1    Kudaravalli, S.2    Kim, S.Y.3    Dermitzakis, E.T.4    Gilad, Y.5
  • 7
    • 77951610155 scopus 로고    scopus 로고
    • Genetic analysis of variation in transcription factor binding in yeast
    • Zheng W, Zhao H, Mancera E, Steinmetz LM, Snyder M, (2010) Genetic analysis of variation in transcription factor binding in yeast. Nature 464: 1187-1191.
    • (2010) Nature , vol.464 , pp. 1187-1191
    • Zheng, W.1    Zhao, H.2    Mancera, E.3    Steinmetz, L.M.4    Snyder, M.5
  • 8
    • 48949094754 scopus 로고    scopus 로고
    • Local regulatory variation in Saccharomyces cerevisiae
    • Ronald J, Brem RB, Whittle J, Kruglyak L, (2005) Local regulatory variation in Saccharomyces cerevisiae. PLoS Genet 1: e25 doi:10.1371/journal.pgen.0010025.
    • (2005) PLoS Genet , vol.1
    • Ronald, J.1    Brem, R.B.2    Whittle, J.3    Kruglyak, L.4
  • 9
    • 33750200729 scopus 로고    scopus 로고
    • Cis-regulatory variations: a study of SNPs around genes showing cis-linkage in segregating mouse populations
    • GuhaThakurta D, Xie T, Anand M, Edwards SW, Li G, et al. (2006) Cis-regulatory variations: a study of SNPs around genes showing cis-linkage in segregating mouse populations. BMC Genomics 7: 235.
    • (2006) BMC Genomics , vol.7 , pp. 235
    • GuhaThakurta, D.1    Xie, T.2    Anand, M.3    Edwards, S.W.4    Li, G.5
  • 12
    • 54149109197 scopus 로고    scopus 로고
    • Epigenome dynamics: a quantitative genetics perspective
    • Johannes F, Colot V, Jansen RC, (2008) Epigenome dynamics: a quantitative genetics perspective. Nat Rev Genet 9: 883-890.
    • (2008) Nat Rev Genet , vol.9 , pp. 883-890
    • Johannes, F.1    Colot, V.2    Jansen, R.C.3
  • 13
    • 33847296166 scopus 로고    scopus 로고
    • Genetic and epigenetic dissection of cis regulatory variation
    • Zhang X, Richards EJ, Borevitz JO, (2007) Genetic and epigenetic dissection of cis regulatory variation. Curr Opin Plant Biol 10: 142-148.
    • (2007) Curr Opin Plant Biol , vol.10 , pp. 142-148
    • Zhang, X.1    Richards, E.J.2    Borevitz, J.O.3
  • 14
    • 33646950851 scopus 로고    scopus 로고
    • Biased alternative polyadenylation in human tissues
    • Zhang H, Lee JY, Tian B, (2005) Biased alternative polyadenylation in human tissues. Genome Biol 6: R100.
    • (2005) Genome Biol , vol.6
    • Zhang, H.1    Lee, J.Y.2    Tian, B.3
  • 15
    • 34249860408 scopus 로고    scopus 로고
    • Three functional variants of IFN regulatory factor 5 (IRF5) define risk and protective haplotypes for human lupus
    • Graham RR, Kyogoku C, Sigurdsson S, Vlasova IA, Davies LR, et al. (2007) Three functional variants of IFN regulatory factor 5 (IRF5) define risk and protective haplotypes for human lupus. Proc Natl Acad Sci U S A 104: 6758-6763.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 6758-6763
    • Graham, R.R.1    Kyogoku, C.2    Sigurdsson, S.3    Vlasova, I.A.4    Davies, L.R.5
  • 16
    • 73649139638 scopus 로고    scopus 로고
    • Global changes in processing of mRNA 3′ untranslated regions characterize clinically distinct cancer subtypes
    • Singh P, Alley TL, Wright SM, Kamdar S, Schott W, et al. (2009) Global changes in processing of mRNA 3′ untranslated regions characterize clinically distinct cancer subtypes. Cancer Res 69: 9422-9430.
    • (2009) Cancer Res , vol.69 , pp. 9422-9430
    • Singh, P.1    Alley, T.L.2    Wright, S.M.3    Kamdar, S.4    Schott, W.5
  • 17
    • 79956307266 scopus 로고    scopus 로고
    • Increased RNA editing in EAAT2 pre-mRNA from amyotrophic lateral sclerosis patients: involvement of a cryptic polyadenylation site
    • Flomen R, Makoff A, (2011) Increased RNA editing in EAAT2 pre-mRNA from amyotrophic lateral sclerosis patients: involvement of a cryptic polyadenylation site. Neurosci Lett 497: 139-143.
    • (2011) Neurosci Lett , vol.497 , pp. 139-143
    • Flomen, R.1    Makoff, A.2
  • 18
    • 33745728414 scopus 로고    scopus 로고
    • A systematic analysis of disease-associated variants in the 3′ regulatory regions of human protein-coding genes I: general principles and overview
    • Chen JM, Ferec C, Cooper DN, (2006) A systematic analysis of disease-associated variants in the 3′ regulatory regions of human protein-coding genes I: general principles and overview. Hum Genet 120: 1-21.
    • (2006) Hum Genet , vol.120 , pp. 1-21
    • Chen, J.M.1    Ferec, C.2    Cooper, D.N.3
  • 19
    • 38949111543 scopus 로고    scopus 로고
    • 3′ end mRNA processing: molecular mechanisms and implications for health and disease
    • Danckwardt S, Hentze MW, Kulozik AE, (2008) 3′ end mRNA processing: molecular mechanisms and implications for health and disease. EMBO J 27: 482-498.
    • (2008) EMBO J , vol.27 , pp. 482-498
    • Danckwardt, S.1    Hentze, M.W.2    Kulozik, A.E.3
  • 20
    • 34249723211 scopus 로고    scopus 로고
    • Point mutations and genomic deletions in CCND1 create stable truncated cyclin D1 mRNAs that are associated with increased proliferation rate and shorter survival
    • Wiestner A, Tehrani M, Chiorazzi M, Wright G, Gibellini F, et al. (2007) Point mutations and genomic deletions in CCND1 create stable truncated cyclin D1 mRNAs that are associated with increased proliferation rate and shorter survival. Blood 109: 4599-4606.
    • (2007) Blood , vol.109 , pp. 4599-4606
    • Wiestner, A.1    Tehrani, M.2    Chiorazzi, M.3    Wright, G.4    Gibellini, F.5
  • 21
    • 63849281404 scopus 로고    scopus 로고
    • Common polymorphic transcript variation in human disease
    • Fraser HB, Xie X, (2009) Common polymorphic transcript variation in human disease. Genome Res 19: 567-575.
    • (2009) Genome Res , vol.19 , pp. 567-575
    • Fraser, H.B.1    Xie, X.2
  • 22
    • 38649090044 scopus 로고    scopus 로고
    • Genome-wide analysis of transcript isoform variation in humans
    • Kwan T, Benovoy D, Dias C, Gurd S, Provencher C, et al. (2008) Genome-wide analysis of transcript isoform variation in humans. Nat Genet 40: 225-231.
    • (2008) Nat Genet , vol.40 , pp. 225-231
    • Kwan, T.1    Benovoy, D.2    Dias, C.3    Gurd, S.4    Provencher, C.5
  • 23
    • 77953284100 scopus 로고    scopus 로고
    • Molecular mechanisms of eukaryotic pre-mRNA 3′ end processing regulation
    • Millevoi S, Vagner S, (2010) Molecular mechanisms of eukaryotic pre-mRNA 3′ end processing regulation. Nucleic Acids Res 38: 2757-2774.
    • (2010) Nucleic Acids Res , vol.38 , pp. 2757-2774
    • Millevoi, S.1    Vagner, S.2
  • 24
    • 60149110358 scopus 로고    scopus 로고
    • Pre-mRNA processing reaches back to transcription and ahead to translation
    • Moore MJ, Proudfoot NJ, (2009) Pre-mRNA processing reaches back to transcription and ahead to translation. Cell 136: 688-700.
    • (2009) Cell , vol.136 , pp. 688-700
    • Moore, M.J.1    Proudfoot, N.J.2
  • 25
    • 80051935631 scopus 로고    scopus 로고
    • Coordinated post-transcriptional regulation of HSP70.3 gene expression by micro-RNA and alternative polyadenylation
    • Tranter M, Helsley RN, Paulding WR, McGuinness M, Brokamp C, et al. (2011) Coordinated post-transcriptional regulation of HSP70.3 gene expression by micro-RNA and alternative polyadenylation. J Biol Chem.
    • (2011) J Biol Chem
    • Tranter, M.1    Helsley, R.N.2    Paulding, W.R.3    McGuinness, M.4    Brokamp, C.5
  • 26
    • 77957682512 scopus 로고    scopus 로고
    • Distinct 3′UTRs differentially regulate activity-dependent translation of brain-derived neurotrophic factor (BDNF)
    • Lau AG, Irier HA, Gu J, Tian D, Ku L, et al. (2010) Distinct 3′UTRs differentially regulate activity-dependent translation of brain-derived neurotrophic factor (BDNF). Proc Natl Acad Sci U S A 107: 15945-15950.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 15945-15950
    • Lau, A.G.1    Irier, H.A.2    Gu, J.3    Tian, D.4    Ku, L.5
  • 27
    • 46149100739 scopus 로고    scopus 로고
    • Distinct role of long 3′ UTR BDNF mRNA in spine morphology and synaptic plasticity in hippocampal neurons
    • An JJ, Gharami K, Liao GY, Woo NH, Lau AG, et al. (2008) Distinct role of long 3′ UTR BDNF mRNA in spine morphology and synaptic plasticity in hippocampal neurons. Cell 134: 175-187.
    • (2008) Cell , vol.134 , pp. 175-187
    • An, J.J.1    Gharami, K.2    Liao, G.Y.3    Woo, N.H.4    Lau, A.G.5
  • 28
    • 67649842761 scopus 로고    scopus 로고
    • Alternative polyadenylation variants of the RNA binding protein, HuR: abundance, role of AU-rich elements and auto-Regulation
    • Al-Ahmadi W, Al-Ghamdi M, Al-Haj L, Al-Saif M, Khabar KS, (2009) Alternative polyadenylation variants of the RNA binding protein, HuR: abundance, role of AU-rich elements and auto-Regulation. Nucleic Acids Res 37: 3612-3624.
    • (2009) Nucleic Acids Res , vol.37 , pp. 3612-3624
    • Al-Ahmadi, W.1    Al-Ghamdi, M.2    Al-Haj, L.3    Al-Saif, M.4    Khabar, K.S.5
  • 29
    • 46249092601 scopus 로고    scopus 로고
    • Proliferating cells express mRNAs with shortened 3′ untranslated regions and fewer microRNA target sites
    • Sandberg R, Neilson JR, Sarma A, Sharp PA, Burge CB, (2008) Proliferating cells express mRNAs with shortened 3′ untranslated regions and fewer microRNA target sites. Science 320: 1643-1647.
    • (2008) Science , vol.320 , pp. 1643-1647
    • Sandberg, R.1    Neilson, J.R.2    Sarma, A.3    Sharp, P.A.4    Burge, C.B.5
  • 30
    • 13744254695 scopus 로고    scopus 로고
    • A large-scale analysis of mRNA polyadenylation of human and mouse genes
    • Tian B, Hu J, Zhang H, Lutz CS, (2005) A large-scale analysis of mRNA polyadenylation of human and mouse genes. Nucleic Acids Res 33: 201-212.
    • (2005) Nucleic Acids Res , vol.33 , pp. 201-212
    • Tian, B.1    Hu, J.2    Zhang, H.3    Lutz, C.S.4
  • 31
    • 56049121431 scopus 로고    scopus 로고
    • MicroRNA-mediated up-regulation of an alternatively polyadenylated variant of the mouse cytoplasmic {beta}-actin gene
    • Ghosh T, Soni K, Scaria V, Halimani M, Bhattacharjee C, et al. (2008) MicroRNA-mediated up-regulation of an alternatively polyadenylated variant of the mouse cytoplasmic {beta}-actin gene. Nucleic Acids Res 36: 6318-6332.
    • (2008) Nucleic Acids Res , vol.36 , pp. 6318-6332
    • Ghosh, T.1    Soni, K.2    Scaria, V.3    Halimani, M.4    Bhattacharjee, C.5
  • 32
    • 0037044739 scopus 로고    scopus 로고
    • Upstream elements present in the 3′-untranslated region of collagen genes influence the processing efficiency of overlapping polyadenylation signals
    • Natalizio BJ, Muniz LC, Arhin GK, Wilusz J, Lutz CS, (2002) Upstream elements present in the 3′-untranslated region of collagen genes influence the processing efficiency of overlapping polyadenylation signals. J Biol Chem 277: 42733-42740.
    • (2002) J Biol Chem , vol.277 , pp. 42733-42740
    • Natalizio, B.J.1    Muniz, L.C.2    Arhin, G.K.3    Wilusz, J.4    Lutz, C.S.5
  • 34
    • 57649129417 scopus 로고    scopus 로고
    • Species-specific cis-regulatory elements in the 3′-untranslated region direct alternative polyadenylation of bone morphogenetic protein 2 mRNA
    • Liu D, Fritz DT, Rogers MB, Shatkin AJ, (2008) Species-specific cis-regulatory elements in the 3′-untranslated region direct alternative polyadenylation of bone morphogenetic protein 2 mRNA. J Biol Chem 283: 28010-28019.
    • (2008) J Biol Chem , vol.283 , pp. 28010-28019
    • Liu, D.1    Fritz, D.T.2    Rogers, M.B.3    Shatkin, A.J.4
  • 35
    • 68749113985 scopus 로고    scopus 로고
    • Widespread shortening of 3′UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells
    • Mayr C, Bartel DP, (2009) Widespread shortening of 3′UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells. Cell 138: 673-684.
    • (2009) Cell , vol.138 , pp. 673-684
    • Mayr, C.1    Bartel, D.P.2
  • 36
    • 66049104920 scopus 로고    scopus 로고
    • Progressive lengthening of 3′ untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development
    • Ji Z, Lee JY, Pan Z, Jiang B, Tian B, (2009) Progressive lengthening of 3′ untranslated regions of mRNAs by alternative polyadenylation during mouse embryonic development. Proc Natl Acad Sci U S A 106: 7028-7033.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 7028-7033
    • Ji, Z.1    Lee, J.Y.2    Pan, Z.3    Jiang, B.4    Tian, B.5
  • 37
    • 77949538391 scopus 로고    scopus 로고
    • Reprogramming of 3′ untranslated regions of mRNAs by alternative polyadenylation in generation of pluripotent stem cells from different cell types
    • Ji Z, Tian B, (2009) Reprogramming of 3′ untranslated regions of mRNAs by alternative polyadenylation in generation of pluripotent stem cells from different cell types. PLoS ONE 4: e8419 doi:10.1371/journal.pone.0008419.
    • (2009) PLoS ONE , vol.4
    • Ji, Z.1    Tian, B.2
  • 38
    • 33846706844 scopus 로고    scopus 로고
    • Systematic variation in mRNA 3′-processing signals during mouse spermatogenesis
    • Liu D, Brockman JM, Dass B, Hutchins LN, Singh P, et al. (2007) Systematic variation in mRNA 3′-processing signals during mouse spermatogenesis. Nucleic Acids Res 35: 234-246.
    • (2007) Nucleic Acids Res , vol.35 , pp. 234-246
    • Liu, D.1    Brockman, J.M.2    Dass, B.3    Hutchins, L.N.4    Singh, P.5
  • 39
    • 57649211993 scopus 로고    scopus 로고
    • Genome-wide analysis of MEF2 transcriptional program reveals synaptic target genes and neuronal activity-dependent polyadenylation site selection
    • Flavell SW, Kim TK, Gray JM, Harmin DA, Hemberg M, et al. (2008) Genome-wide analysis of MEF2 transcriptional program reveals synaptic target genes and neuronal activity-dependent polyadenylation site selection. Neuron 60: 1022-1038.
    • (2008) Neuron , vol.60 , pp. 1022-1038
    • Flavell, S.W.1    Kim, T.K.2    Gray, J.M.3    Harmin, D.A.4    Hemberg, M.5
  • 40
    • 79955554179 scopus 로고    scopus 로고
    • Differential genome-wide profiling of tandem 3′ UTRs among human breast cancer and normal cells by high-throughput sequencing
    • Fu Y, Sun Y, Li Y, Li J, Rao X, et al. (2011) Differential genome-wide profiling of tandem 3′ UTRs among human breast cancer and normal cells by high-throughput sequencing. Genome Research 21: 741-747.
    • (2011) Genome Research , vol.21 , pp. 741-747
    • Fu, Y.1    Sun, Y.2    Li, Y.3    Li, J.4    Rao, X.5
  • 41
    • 78650972252 scopus 로고    scopus 로고
    • Formation, regulation and evolution of Caenorhabditis elegans 3′UTRs
    • Jan CH, Friedman RC, Ruby JG, Bartel DP, (2011) Formation, regulation and evolution of Caenorhabditis elegans 3′UTRs. Nature 469: 97-101.
    • (2011) Nature , vol.469 , pp. 97-101
    • Jan, C.H.1    Friedman, R.C.2    Ruby, J.G.3    Bartel, D.P.4
  • 42
    • 77952727403 scopus 로고    scopus 로고
    • Noncanonical transcript forms in yeast and their regulation during environmental stress
    • Yoon OK, Brem RB, (2011) Noncanonical transcript forms in yeast and their regulation during environmental stress. RNA 16: 1256-1267.
    • (2011) RNA , vol.16 , pp. 1256-1267
    • Yoon, O.K.1    Brem, R.B.2
  • 44
    • 79953014914 scopus 로고    scopus 로고
    • Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq
    • Shepard PJ, Choi EA, Lu J, Flanagan LA, Hertel KJ, et al. (2011) Complex and dynamic landscape of RNA polyadenylation revealed by PAS-Seq. RNA 17: 761-772.
    • (2011) RNA , vol.17 , pp. 761-772
    • Shepard, P.J.1    Choi, E.A.2    Lu, J.3    Flanagan, L.A.4    Hertel, K.J.5
  • 45
    • 78649910014 scopus 로고    scopus 로고
    • Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation
    • Ozsolak F, Kapranov P, Foissac S, Kim SW, Fishilevich E, et al. (2010) Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation. Cell 143: 1018-1029.
    • (2010) Cell , vol.143 , pp. 1018-1029
    • Ozsolak, F.1    Kapranov, P.2    Foissac, S.3    Kim, S.W.4    Fishilevich, E.5
  • 46
    • 77950460661 scopus 로고    scopus 로고
    • Understanding mechanisms underlying human gene expression variation with RNA sequencing
    • Pickrell JK, Marioni JC, Pai AA, Degner JF, Engelhardt BE, et al. (2010) Understanding mechanisms underlying human gene expression variation with RNA sequencing. Nature 464: 768-772.
    • (2010) Nature , vol.464 , pp. 768-772
    • Pickrell, J.K.1    Marioni, J.C.2    Pai, A.A.3    Degner, J.F.4    Engelhardt, B.E.5
  • 47
    • 0037197827 scopus 로고    scopus 로고
    • Oligo(dT) primer generates a high frequency of truncated cDNAs through internal poly(A) priming during reverse transcription
    • Nam DK, Lee S, Zhou G, Cao X, Wang C, et al. (2002) Oligo(dT) primer generates a high frequency of truncated cDNAs through internal poly(A) priming during reverse transcription. Proc Natl Acad Sci U S A 99: 6152-6156.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 6152-6156
    • Nam, D.K.1    Lee, S.2    Zhou, G.3    Cao, X.4    Wang, C.5
  • 48
    • 77951977370 scopus 로고    scopus 로고
    • A functional human Poly(A) site requires only a potent DSE and an A-rich upstream sequence
    • Nunes NM, Li W, Tian B, Furger A, (2010) A functional human Poly(A) site requires only a potent DSE and an A-rich upstream sequence. EMBO J 29: 1523-1536.
    • (2010) EMBO J , vol.29 , pp. 1523-1536
    • Nunes, N.M.1    Li, W.2    Tian, B.3    Furger, A.4
  • 49
    • 0037335613 scopus 로고    scopus 로고
    • Downstream elements of mammalian pre-mRNA polyadenylation signals: primary, secondary and higher-order structures
    • Zarudnaya MI, Kolomiets IM, Potyahaylo AL, Hovorun DM, (2003) Downstream elements of mammalian pre-mRNA polyadenylation signals: primary, secondary and higher-order structures. Nucleic Acids Res 31: 1375-1386.
    • (2003) Nucleic Acids Res , vol.31 , pp. 1375-1386
    • Zarudnaya, M.I.1    Kolomiets, I.M.2    Potyahaylo, A.L.3    Hovorun, D.M.4
  • 50
    • 22344439263 scopus 로고    scopus 로고
    • Analysis of a noncanonical poly(A) site reveals a tripartite mechanism for vertebrate poly(A) site recognition
    • Venkataraman K, Brown KM, Gilmartin GM, (2005) Analysis of a noncanonical poly(A) site reveals a tripartite mechanism for vertebrate poly(A) site recognition. Genes Dev 19: 1315-1327.
    • (2005) Genes Dev , vol.19 , pp. 1315-1327
    • Venkataraman, K.1    Brown, K.M.2    Gilmartin, G.M.3
  • 51
    • 0242292336 scopus 로고    scopus 로고
    • Sequence determinants in human polyadenylation site selection
    • Legendre M, Gautheret D, (2003) Sequence determinants in human polyadenylation site selection. BMC Genomics 4: 7.
    • (2003) BMC Genomics , vol.4 , pp. 7
    • Legendre, M.1    Gautheret, D.2
  • 52
    • 33751520430 scopus 로고    scopus 로고
    • Natural selection on human microRNA binding sites inferred from SNP data
    • Chen K, Rajewsky N, (2006) Natural selection on human microRNA binding sites inferred from SNP data. Nat Genet 38: 1452-1456.
    • (2006) Nat Genet , vol.38 , pp. 1452-1456
    • Chen, K.1    Rajewsky, N.2
  • 54
    • 33747586532 scopus 로고    scopus 로고
    • Conservation of alternative polyadenylation patterns in mammalian genes
    • Ara T, Lopez F, Ritchie W, Benech P, Gautheret D, (2006) Conservation of alternative polyadenylation patterns in mammalian genes. BMC Genomics 7: 189.
    • (2006) BMC Genomics , vol.7 , pp. 189
    • Ara, T.1    Lopez, F.2    Ritchie, W.3    Benech, P.4    Gautheret, D.5
  • 55
    • 78049353079 scopus 로고    scopus 로고
    • Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33
    • Houlston RS, Cheadle J, Dobbins SE, Tenesa A, Jones AM, et al. (2010) Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33. Nat Genet 42: 973-977.
    • (2010) Nat Genet , vol.42 , pp. 973-977
    • Houlston, R.S.1    Cheadle, J.2    Dobbins, S.E.3    Tenesa, A.4    Jones, A.M.5
  • 56
    • 84865179916 scopus 로고    scopus 로고
    • Tristetraprolin-driven regulatory circuit controls quality and timing of mRNA decay in inflammation
    • Kratochvill F, Machacek C, Vogl C, Ebner F, Sedlyarov V, et al. (2011) Tristetraprolin-driven regulatory circuit controls quality and timing of mRNA decay in inflammation. Mol Syst Biol 7: 560.
    • (2011) Mol Syst Biol , vol.7 , pp. 560
    • Kratochvill, F.1    Machacek, C.2    Vogl, C.3    Ebner, F.4    Sedlyarov, V.5
  • 57
    • 34548411427 scopus 로고    scopus 로고
    • Regulating B-cell activation and survival in response to TLR signals
    • Gerondakis S, Grumont RJ, Banerjee A, (2007) Regulating B-cell activation and survival in response to TLR signals. Immunol Cell Biol 85: 471-475.
    • (2007) Immunol Cell Biol , vol.85 , pp. 471-475
    • Gerondakis, S.1    Grumont, R.J.2    Banerjee, A.3
  • 58
    • 34249699555 scopus 로고    scopus 로고
    • Rapid transit in the immune cells: the role of mRNA turnover regulation
    • Khabar KS, (2007) Rapid transit in the immune cells: the role of mRNA turnover regulation. J Leukoc Biol 81: 1335-1344.
    • (2007) J Leukoc Biol , vol.81 , pp. 1335-1344
    • Khabar, K.S.1
  • 60
    • 34347400412 scopus 로고    scopus 로고
    • A new advance in alternative splicing databases: from catalogue to detailed analysis of regulation of expression and function of human alternative splicing variants
    • de la Grange P, Dutertre M, Correa M, Auboeuf D, (2007) A new advance in alternative splicing databases: from catalogue to detailed analysis of regulation of expression and function of human alternative splicing variants. BMC Bioinformatics 8: 180.
    • (2007) BMC Bioinformatics , vol.8 , pp. 180
    • de la Grange, P.1    Dutertre, M.2    Correa, M.3    Auboeuf, D.4
  • 61
    • 33646947554 scopus 로고    scopus 로고
    • Differential repression of alternative transcripts: a screen for miRNA targets
    • Legendre M, Ritchie W, Lopez F, Gautheret D, (2006) Differential repression of alternative transcripts: a screen for miRNA targets. PLoS Comput Biol 2: e43 doi:10.1371/journal.pcbi.0020043.
    • (2006) PLoS Comput Biol , vol.2
    • Legendre, M.1    Ritchie, W.2    Lopez, F.3    Gautheret, D.4
  • 64
    • 33846059244 scopus 로고    scopus 로고
    • PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes
    • Lee JY, Yeh I, Park JY, Tian B, (2007) PolyA_DB 2: mRNA polyadenylation sites in vertebrate genes. Nucleic Acids Res 35: D165-168.
    • (2007) Nucleic Acids Res , vol.35
    • Lee, J.Y.1    Yeh, I.2    Park, J.Y.3    Tian, B.4
  • 67
    • 34250805982 scopus 로고    scopus 로고
    • MicroRNA targeting specificity in mammals: determinants beyond seed pairing
    • Grimson A, Farh KK, Johnston WK, Garrett-Engele P, Lim LP, et al. (2007) MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell 27: 91-105.
    • (2007) Mol Cell , vol.27 , pp. 91-105
    • Grimson, A.1    Farh, K.K.2    Johnston, W.K.3    Garrett-Engele, P.4    Lim, L.P.5
  • 68
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • The 1000 Genomes Project Consortium
    • The 1000 Genomes Project Consortium (2010) A map of human genome variation from population-scale sequencing. Nature 467: 1061-1073.
    • (2010) Nature , vol.467 , pp. 1061-1073
  • 69
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome defined by RNA sequencing
    • Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, et al. (2008) The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 320: 1344-1349.
    • (2008) Science , vol.320 , pp. 1344-1349
    • Nagalakshmi, U.1    Wang, Z.2    Waern, K.3    Shou, C.4    Raha, D.5
  • 70
    • 0025085655 scopus 로고
    • Ligation-independent cloning of PCR products (LIC-PCR)
    • Aslanidis C, de Jong PJ, (1990) Ligation-independent cloning of PCR products (LIC-PCR). Nucleic Acids Res 18: 6069-6074.
    • (1990) Nucleic Acids Res , vol.18 , pp. 6069-6074
    • Aslanidis, C.1    de Jong, P.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.