메뉴 건너뛰기




Volumn 75, Issue 18, 2012, Pages 5797-5806

A novel quantitative proteomics workflow by isobaric terminal labeling

Author keywords

HCC; Isobaric peptide labeling; Mass spectrometry; MS2 quantification; Quantitative proteomics

Indexed keywords

FORMALDEHYDE; LIVER PROTEIN; LYSINE; OXYGEN; OXYGEN 18; PROTEOME; TRYPSIN;

EID: 84866150487     PISSN: 18743919     EISSN: 18767737     Source Type: Journal    
DOI: 10.1016/j.jprot.2012.07.011     Document Type: Article
Times cited : (30)

References (36)
  • 1
    • 33644524918 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics turns quantitative
    • Ong S.E., Mann M. Mass spectrometry-based proteomics turns quantitative. Nat Chem Biol 2005, 1:252-262.
    • (2005) Nat Chem Biol , vol.1 , pp. 252-262
    • Ong, S.E.1    Mann, M.2
  • 3
    • 0016711037 scopus 로고
    • High resolution two-dimensional electrophoresis of proteins
    • O'Farrell P.H. High resolution two-dimensional electrophoresis of proteins. J Biol Chem 1975, 250:4007-4021.
    • (1975) J Biol Chem , vol.250 , pp. 4007-4021
    • O'Farrell, P.H.1
  • 4
    • 0036583926 scopus 로고    scopus 로고
    • Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
    • Ong S.E., Blagoev B., Kratchmarova I., Kristensen D.B., Steen H., Pandey A., et al. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 2002, 1:376-386.
    • (2002) Mol Cell Proteomics , vol.1 , pp. 376-386
    • Ong, S.E.1    Blagoev, B.2    Kratchmarova, I.3    Kristensen, D.B.4    Steen, H.5    Pandey, A.6
  • 5
    • 0036428393 scopus 로고    scopus 로고
    • Amino acid residue specific stable isotope labeling for quantitative proteomics
    • Zhu H., Pan S., Gu S., Bradbury E.M., Chen X. Amino acid residue specific stable isotope labeling for quantitative proteomics. Rapid Commun Mass Spectrom 2002, 16:2115-2123.
    • (2002) Rapid Commun Mass Spectrom , vol.16 , pp. 2115-2123
    • Zhu, H.1    Pan, S.2    Gu, S.3    Bradbury, E.M.4    Chen, X.5
  • 6
    • 0035384687 scopus 로고    scopus 로고
    • 18O labeling for comparative proteomics: model studies with two serotypes of adenovirus
    • 18O labeling for comparative proteomics: model studies with two serotypes of adenovirus. Anal Chem 2001, 73:2836-2842.
    • (2001) Anal Chem , vol.73 , pp. 2836-2842
    • Yao, X.1    Freas, A.2    Ramirez, J.3    Demirev, P.A.4    Fenselau, C.5
  • 7
    • 0032875697 scopus 로고    scopus 로고
    • Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
    • Gygi S.P., Rist B., Gerber S.A., Turecek F., Gelb M.H., Aebersold R. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat Biotechnol 1999, 17:994-999.
    • (1999) Nat Biotechnol , vol.17 , pp. 994-999
    • Gygi, S.P.1    Rist, B.2    Gerber, S.A.3    Turecek, F.4    Gelb, M.H.5    Aebersold, R.6
  • 8
    • 0348014635 scopus 로고    scopus 로고
    • Stable-isotope dimethyl labeling for quantitative proteomics
    • Hsu J.L., Huang S.Y., Chow N.H., Chen S.H. Stable-isotope dimethyl labeling for quantitative proteomics. Anal Chem 2003, 75:6843-6852.
    • (2003) Anal Chem , vol.75 , pp. 6843-6852
    • Hsu, J.L.1    Huang, S.Y.2    Chow, N.H.3    Chen, S.H.4
  • 9
    • 14744293536 scopus 로고    scopus 로고
    • Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra
    • Venable J.D., Dong M.-Q., Wohlschlegel J., Dillin A., Yates J.R. Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra. Nat Methods 2004, 1:39-45.
    • (2004) Nat Methods , vol.1 , pp. 39-45
    • Venable, J.D.1    Dong, M.-Q.2    Wohlschlegel, J.3    Dillin, A.4    Yates, J.R.5
  • 10
    • 33644669753 scopus 로고    scopus 로고
    • Automated comparative proteomics based on multiplex tandem mass spectrometry and stable isotope labeling
    • Zhang G., Neubert T.A. Automated comparative proteomics based on multiplex tandem mass spectrometry and stable isotope labeling. Mol Cell Proteomics 2006, 5:401-411.
    • (2006) Mol Cell Proteomics , vol.5 , pp. 401-411
    • Zhang, G.1    Neubert, T.A.2
  • 11
    • 67650388719 scopus 로고    scopus 로고
    • 18O-labeling in combination with MS/MS spectra analysis
    • 18O-labeling in combination with MS/MS spectra analysis. J Proteome Res 2009, 8:3653-3665.
    • (2009) J Proteome Res , vol.8 , pp. 3653-3665
    • White, C.A.1    Oey, N.2    Emili, A.3
  • 12
    • 19944432197 scopus 로고    scopus 로고
    • Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
    • Ross P.L., Huang Y.N., Marchese J.N., Williamson B., Parker K., Hattan S., et al. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics 2004, 3:1154-1169.
    • (2004) Mol Cell Proteomics , vol.3 , pp. 1154-1169
    • Ross, P.L.1    Huang, Y.N.2    Marchese, J.N.3    Williamson, B.4    Parker, K.5    Hattan, S.6
  • 13
    • 35648942133 scopus 로고    scopus 로고
    • 8-Plex quantitation of changes in cerebrospinal fluid protein expression in subjects undergoing intravenous immunoglobulin treatment for Alzheimer's disease
    • Choe L., D'Ascenzo M., Relkin N.R., Pappin D., Ross P., Williamson B., et al. 8-Plex quantitation of changes in cerebrospinal fluid protein expression in subjects undergoing intravenous immunoglobulin treatment for Alzheimer's disease. Proteomics 2007, 7:3651-3660.
    • (2007) Proteomics , vol.7 , pp. 3651-3660
    • Choe, L.1    D'Ascenzo, M.2    Relkin, N.R.3    Pappin, D.4    Ross, P.5    Williamson, B.6
  • 14
    • 12444345515 scopus 로고    scopus 로고
    • Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
    • Thompson A., Schäfer J., Kuhn K., Kienle S., Schwarz J., Schmidt G., et al. Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. Anal Chem 2003, 75:1895-1904.
    • (2003) Anal Chem , vol.75 , pp. 1895-1904
    • Thompson, A.1    Schäfer, J.2    Kuhn, K.3    Kienle, S.4    Schwarz, J.5    Schmidt, G.6
  • 15
    • 42349105213 scopus 로고    scopus 로고
    • Relative quantification of proteins in human cerebrospinal fluids by MS/MS using 6-Plex isobaric tags
    • Dayon L., Hainard A., Licker V., Turck N., Kuhn K., Hochstrasser D.F., et al. Relative quantification of proteins in human cerebrospinal fluids by MS/MS using 6-Plex isobaric tags. Anal Chem 2008, 80:2921-2931.
    • (2008) Anal Chem , vol.80 , pp. 2921-2931
    • Dayon, L.1    Hainard, A.2    Licker, V.3    Turck, N.4    Kuhn, K.5    Hochstrasser, D.F.6
  • 16
    • 29744460317 scopus 로고    scopus 로고
    • High amplitude short time excitation: a method to form and detect low mass product ions in a quadrupole ion trap mass spectrometer
    • Cunningham C., Glish G.L., Burinsky D.J. High amplitude short time excitation: a method to form and detect low mass product ions in a quadrupole ion trap mass spectrometer. J Am Soc Mass Spectrom 2006, 17:81-84.
    • (2006) J Am Soc Mass Spectrom , vol.17 , pp. 81-84
    • Cunningham, C.1    Glish, G.L.2    Burinsky, D.J.3
  • 17
    • 70449412362 scopus 로고    scopus 로고
    • ITRAQ underestimation in simple and complex mixtures: "The Good, the Bad and the Ugly"
    • Ow S.Y., Salim M., Noirel J., Evans C., Rehman I., Wright P.C. iTRAQ underestimation in simple and complex mixtures: "The Good, the Bad and the Ugly". J Proteome Res 2009, 8:5347-5355.
    • (2009) J Proteome Res , vol.8 , pp. 5347-5355
    • Ow, S.Y.1    Salim, M.2    Noirel, J.3    Evans, C.4    Rehman, I.5    Wright, P.C.6
  • 19
    • 79959236260 scopus 로고    scopus 로고
    • Isobaric peptide termini labeling utilizing site-specific n-terminal succinylation
    • Koehler C.J., Arntzen M.Ø., Strozynski M., Treumann A., Thiede B. Isobaric peptide termini labeling utilizing site-specific n-terminal succinylation. Anal Chem 2011, 83:4775-4781.
    • (2011) Anal Chem , vol.83 , pp. 4775-4781
    • Koehler, C.J.1    Arntzen, M.Ø.2    Strozynski, M.3    Treumann, A.4    Thiede, B.5
  • 20
    • 21844457685 scopus 로고    scopus 로고
    • Fragmentation pathways of protonated peptides
    • Paizs B., Suhai S. Fragmentation pathways of protonated peptides. Mass Spectrom Rev 2005, 24:508-548.
    • (2005) Mass Spectrom Rev , vol.24 , pp. 508-548
    • Paizs, B.1    Suhai, S.2
  • 21
    • 79960991691 scopus 로고    scopus 로고
    • In vivo termini amino acid labeling for quantitative proteomics
    • Nie A.Y., Zhang L., Yan G.Q., Yao J., Zhang Y., Lu H.J., et al. In vivo termini amino acid labeling for quantitative proteomics. Anal Chem 2011, 83:6026-6033.
    • (2011) Anal Chem , vol.83 , pp. 6026-6033
    • Nie, A.Y.1    Zhang, L.2    Yan, G.Q.3    Yao, J.4    Zhang, Y.5    Lu, H.J.6
  • 22
    • 79953212264 scopus 로고    scopus 로고
    • Index-ion triggered MS2 ion quantification: a novel proteomics approach for reproducible detection and quantification of targeted proteins in complex mixtures
    • Yan W., Luo J., Robinson M., Eng J., Aebersold R., Ranish J. Index-ion triggered MS2 ion quantification: a novel proteomics approach for reproducible detection and quantification of targeted proteins in complex mixtures. Mol Cell Proteomics 2011, 10.
    • (2011) Mol Cell Proteomics , vol.10
    • Yan, W.1    Luo, J.2    Robinson, M.3    Eng, J.4    Aebersold, R.5    Ranish, J.6
  • 23
    • 80051825321 scopus 로고    scopus 로고
    • 18O labelling and linear ion trap mass spectrometry analysis of lymph nodes from piglets inoculated by porcine circovirus type 2
    • 18O labelling and linear ion trap mass spectrometry analysis of lymph nodes from piglets inoculated by porcine circovirus type 2. Proteomics 2011, 11:3452-3469.
    • (2011) Proteomics , vol.11 , pp. 3452-3469
    • Ramírez-Boo, M.1    Núnez, E.2    Jorge, I.3    Navarro, P.4    Fernandes, L.T.5    Segalés, J.6
  • 24
    • 29144504045 scopus 로고    scopus 로고
    • Differential dimethyl labeling of N-termini of peptides after guanidination for proteome analysis
    • Ji C.J., Guo N., Li L. Differential dimethyl labeling of N-termini of peptides after guanidination for proteome analysis. J Proteome Res 2005, 4:2099-2108.
    • (2005) J Proteome Res , vol.4 , pp. 2099-2108
    • Ji, C.J.1    Guo, N.2    Li, L.3
  • 25
    • 64749108158 scopus 로고    scopus 로고
    • Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics
    • Boersema P.J., Raijmakers R., Lemeer S., Mohammed S., Heck A.J.R. Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics. Nat Protoc 2009, 4:484-494.
    • (2009) Nat Protoc , vol.4 , pp. 484-494
    • Boersema, P.J.1    Raijmakers, R.2    Lemeer, S.3    Mohammed, S.4    Heck, A.J.R.5
  • 26
    • 0033783397 scopus 로고    scopus 로고
    • Improved matrix-assisted laser desorption/ionization mass spectrometric analysis of tryptic hydrolysates of proteins following guanidination of lysine-containing peptides
    • Brancia F.L., Oliver S.G., Gaskell S.J. Improved matrix-assisted laser desorption/ionization mass spectrometric analysis of tryptic hydrolysates of proteins following guanidination of lysine-containing peptides. Rapid Commun Mass Spectrom 2000, 14:2070-2073.
    • (2000) Rapid Commun Mass Spectrom , vol.14 , pp. 2070-2073
    • Brancia, F.L.1    Oliver, S.G.2    Gaskell, S.J.3
  • 28
    • 0036682618 scopus 로고    scopus 로고
    • Controlling deuterium isotope effects in comparative proteomics
    • Zhang R., Sioma C.S., Thompson R.A., Xiong L., Regnier F.E. Controlling deuterium isotope effects in comparative proteomics. Anal Chem 2002, 74:3662-3669.
    • (2002) Anal Chem , vol.74 , pp. 3662-3669
    • Zhang, R.1    Sioma, C.S.2    Thompson, R.A.3    Xiong, L.4    Regnier, F.E.5
  • 29
    • 0036391333 scopus 로고    scopus 로고
    • 18O labeling for comparative proteomics: evaluation of endoprotease Glu-C as the catalytic agent
    • 18O labeling for comparative proteomics: evaluation of endoprotease Glu-C as the catalytic agent. J Proteome Res 2002, 1:27-33.
    • (2002) J Proteome Res , vol.1 , pp. 27-33
    • Reynolds, K.J.1    Yao, X.2    Fenselau, C.3
  • 30
    • 61949430429 scopus 로고    scopus 로고
    • Capn4 overexpression underlies tumor invasion and metastasis after liver transplantation for hepatocellular carcinoma
    • Bai D.S., Dai Z., Zhou J., Liu Y.K., Qiu S.J., Tan C.J., et al. Capn4 overexpression underlies tumor invasion and metastasis after liver transplantation for hepatocellular carcinoma. Hepatology 2009, 49:460-470.
    • (2009) Hepatology , vol.49 , pp. 460-470
    • Bai, D.S.1    Dai, Z.2    Zhou, J.3    Liu, Y.K.4    Qiu, S.J.5    Tan, C.J.6
  • 31
    • 77951429707 scopus 로고    scopus 로고
    • Prognostic markers and putative therapeutic targets for hepatocellular carcinoma
    • Frau M., Biasi F., Feo F., Pascale R.M. Prognostic markers and putative therapeutic targets for hepatocellular carcinoma. Mol Aspects Med 2010, 31:179-193.
    • (2010) Mol Aspects Med , vol.31 , pp. 179-193
    • Frau, M.1    Biasi, F.2    Feo, F.3    Pascale, R.M.4
  • 32
    • 30344451098 scopus 로고    scopus 로고
    • Two-dimensional separation of peptides using RP-RP-HPLC system with different pH in first and second separation dimensions
    • Gilar M., Olivova P., Daly A.E., Gebler J.C. Two-dimensional separation of peptides using RP-RP-HPLC system with different pH in first and second separation dimensions. J Sep Sci 2005, 28:1694-1703.
    • (2005) J Sep Sci , vol.28 , pp. 1694-1703
    • Gilar, M.1    Olivova, P.2    Daly, A.E.3    Gebler, J.C.4
  • 33
    • 77950453754 scopus 로고    scopus 로고
    • A fully automated system with online sample loading, isotope dimethyl labeling and multidimensional separation for high-throughput quantitative proteome analysis
    • Wang F.J., Chen R., Zhu J., Sun D.G., Song C.X., Wu Y.F., et al. A fully automated system with online sample loading, isotope dimethyl labeling and multidimensional separation for high-throughput quantitative proteome analysis. Anal Chem 2010, 82:3007-3015.
    • (2010) Anal Chem , vol.82 , pp. 3007-3015
    • Wang, F.J.1    Chen, R.2    Zhu, J.3    Sun, D.G.4    Song, C.X.5    Wu, Y.F.6
  • 35
    • 40449099255 scopus 로고    scopus 로고
    • EpCAM and α-fetoprotein expression defines novel prognostic subtypes of hepatocellular carcinoma
    • Yamashita T., Forgues M., Wang W., Kim J.W., Ye Q., Jia H., et al. EpCAM and α-fetoprotein expression defines novel prognostic subtypes of hepatocellular carcinoma. Cancer Res 2008, 68:1451-1461.
    • (2008) Cancer Res , vol.68 , pp. 1451-1461
    • Yamashita, T.1    Forgues, M.2    Wang, W.3    Kim, J.W.4    Ye, Q.5    Jia, H.6
  • 36
    • 0035910064 scopus 로고    scopus 로고
    • Insight into hepatocellular carcinogenesis at transcriptome level by comparing gene expression profiles of hepatocellular carcinoma with those of corresponding noncancerous liver
    • Xu X.R., Huang J., Xu Z.G., Qian B.Z., Zhu Z.D., Yan Q., et al. Insight into hepatocellular carcinogenesis at transcriptome level by comparing gene expression profiles of hepatocellular carcinoma with those of corresponding noncancerous liver. Proc Natl Acad Sci U S A 2001, 98:15089-15094.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 15089-15094
    • Xu, X.R.1    Huang, J.2    Xu, Z.G.3    Qian, B.Z.4    Zhu, Z.D.5    Yan, Q.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.