-
1
-
-
79959958529
-
Performance characteristics of a new hybrid quadrupole time-of-flight tandem mass spectrometer (TripleTOF 5600)
-
Andrews, G. L., Simons, B. L., Young, J. B., Hawkridge, A. M. et al., Performance characteristics of a new hybrid quadrupole time-of-flight tandem mass spectrometer (TripleTOF 5600). Anal. Chem. 2011, 83, 5442-5446.
-
(2011)
Anal. Chem.
, vol.83
, pp. 5442-5446
-
-
Andrews, G.L.1
Simons, B.L.2
Young, J.B.3
Hawkridge, A.M.4
-
2
-
-
80051624900
-
Deep and highly sensitive proteome coverage by LC-MS/MS without prefractionation
-
Thakur, S. S., Geiger, T., Chatterjee, B., Bandilla, P. et al., Deep and highly sensitive proteome coverage by LC-MS/MS without prefractionation. Mol. Cell. Proteom. 2011, 10, M110 003699.
-
(2011)
Mol. Cell. Proteom.
, vol.10
-
-
Thakur, S.S.1
Geiger, T.2
Chatterjee, B.3
Bandilla, P.4
-
3
-
-
78649857218
-
Compid: a new software tool to integrate and compare MS/MS based protein identification results from Mascot and Paragon
-
Lietzen, N., Natri, L., Nevalainen, O. S., Salmi, J. et al., Compid: a new software tool to integrate and compare MS/MS based protein identification results from Mascot and Paragon. J. Proteome. Res. 2010, 9, 6795-6800.
-
(2010)
J. Proteome. Res.
, vol.9
, pp. 6795-6800
-
-
Lietzen, N.1
Natri, L.2
Nevalainen, O.S.3
Salmi, J.4
-
4
-
-
77954720730
-
MASPECTRAS 2: an integration and analysis platform for proteomic data
-
Ubaida Mohien, C., Hartler, J., Breitwieser, F., Rix, U. et al., MASPECTRAS 2: an integration and analysis platform for proteomic data. Proteomics 2010, 10, 2719-2722.
-
(2010)
Proteomics
, vol.10
, pp. 2719-2722
-
-
Ubaida Mohien, C.1
Hartler, J.2
Breitwieser, F.3
Rix, U.4
-
5
-
-
33746930864
-
A uniform proteomics MS/MS analysis platform utilizing open XML file formats
-
doi: 10.1038/msb4100024.
-
Keller, A., Eng, J., Zhang, N., Li, X. J. et al., A uniform proteomics MS/MS analysis platform utilizing open XML file formats. Mol. Syst. Biol. 2005, 1, 2005.0017. doi: 10.1038/msb4100024.
-
(2005)
Mol. Syst. Biol.
, vol.1
, pp. 20050017
-
-
Keller, A.1
Eng, J.2
Zhang, N.3
Li, X.J.4
-
6
-
-
11144320641
-
Open source system for analyzing, validating, and storing protein identification data
-
Craig, R., Cortens, J. P., Beavis, R. C., Open source system for analyzing, validating, and storing protein identification data. J. Proteome. Res. 2004, 3, 1234-1242.
-
(2004)
J. Proteome. Res.
, vol.3
, pp. 1234-1242
-
-
Craig, R.1
Cortens, J.P.2
Beavis, R.C.3
-
7
-
-
30744438115
-
Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments
-
Rauch, A., Bellew, M., Eng, J., Fitzgibbon, M. et al., Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments. J. Proteome. Res. 2006, 5, 112-121.
-
(2006)
J. Proteome. Res.
, vol.5
, pp. 112-121
-
-
Rauch, A.1
Bellew, M.2
Eng, J.3
Fitzgibbon, M.4
-
8
-
-
67049100049
-
The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data
-
Hakkinen, J., Vincic, G., Mansson, O., Warell, K. et al., The proteios software environment: an extensible multiuser platform for management and analysis of proteomics data. J. Proteome. Res. 2009, 8, 3037-3043.
-
(2009)
J. Proteome. Res.
, vol.8
, pp. 3037-3043
-
-
Hakkinen, J.1
Vincic, G.2
Mansson, O.3
Warell, K.4
-
9
-
-
26944474804
-
STEM: a software tool for large-scale proteomic data analyses
-
Shinkawa, T., Taoka, M., Yamauchi, Y., Ichimura, T. et al., STEM: a software tool for large-scale proteomic data analyses. J. Proteome. Res. 2005, 4, 1826-1831.
-
(2005)
J. Proteome. Res.
, vol.4
, pp. 1826-1831
-
-
Shinkawa, T.1
Taoka, M.2
Yamauchi, Y.3
Ichimura, T.4
-
10
-
-
34249062964
-
The minimum information about a proteomics experiment (MIAPE)
-
Taylor, C. F., Paton, N. W., Lilley, K. S., Binz, P. A. et al., The minimum information about a proteomics experiment (MIAPE). Nat. Biotechnol. 2007, 25, 887-893.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 887-893
-
-
Taylor, C.F.1
Paton, N.W.2
Lilley, K.S.3
Binz, P.A.4
-
11
-
-
49449096589
-
Guidelines for reporting the use of mass spectrometry informatics in proteomics
-
Binz, P. A., Barkovich, R., Beavis, R. C., Creasy, D. et al., Guidelines for reporting the use of mass spectrometry informatics in proteomics. Nat. Biotechnol. 2008, 26, 862.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 862
-
-
Binz, P.A.1
Barkovich, R.2
Beavis, R.C.3
Creasy, D.4
-
12
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D. et al., Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 2000, 25, 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
-
13
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D. N., Pappin, D. J., Creasy, D. M., Cottrell, J. S., Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 1999, 20, 3551-3567.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.2
Creasy, D.M.3
Cottrell, J.S.4
-
14
-
-
34848889259
-
The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra
-
Shilov, I. V., Seymour, S. L., Patel, A. A., Loboda, A. et al., The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra. Mol. Cell. Proteome. 2007, 6, 1638-1655.
-
(2007)
Mol. Cell. Proteome.
, vol.6
, pp. 1638-1655
-
-
Shilov, I.V.1
Seymour, S.L.2
Patel, A.A.3
Loboda, A.4
-
15
-
-
84860833500
-
Reorganizing the protein space at the Universal Protein Resource (UniProt)
-
The UniProt Consortium
-
The UniProt Consortium, Reorganizing the protein space at the Universal Protein Resource (UniProt). Nucleic Acids Res. 2012, 40, D71-D75.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
-
16
-
-
79551632508
-
In-depth analysis of the chicken egg white proteome using an LTQ Orbitrap Velos
-
Mann, K., Mann, M., In-depth analysis of the chicken egg white proteome using an LTQ Orbitrap Velos. Proteome Sci. 2011, 9, 1-6.
-
(2011)
Proteome Sci.
, vol.9
, pp. 1-6
-
-
Mann, K.1
Mann, M.2
-
17
-
-
77957192821
-
Using a label-free proteomics method to identify differentially abundant proteins in closely related hypo- and hypervirulent clinical Mycobacterium tuberculosis Beijing isolates
-
de
-
de Souza, G. A., Fortuin, S., Aguilar, D., Pando, R. H. et al., Using a label-free proteomics method to identify differentially abundant proteins in closely related hypo- and hypervirulent clinical Mycobacterium tuberculosis Beijing isolates. Mol. Cell. Proteome. 2010, 9, 2414-2423.
-
(2010)
Mol. Cell. Proteome.
, vol.9
, pp. 2414-2423
-
-
Souza, G.A.1
Fortuin, S.2
Aguilar, D.3
Pando, R.H.4
-
18
-
-
84864587796
-
Human Cornea Proteome: identification and quantitation of the proteins of the three main layers including epithelium, stroma, and endothelium
-
Dyrlund, T. F., Poulsen, E. T., Scavenius, C., Nikolajsen, C. L., Thøgersen, I. B., Vorum, H., Enghild, J. J., Human Cornea Proteome: identification and quantitation of the proteins of the three main layers including epithelium, stroma, and endothelium. J. Proteome. Res. 2012, 11, 4231-4239.
-
(2012)
J. Proteome. Res.
, vol.11
, pp. 4231-4239
-
-
Dyrlund, T.F.1
Poulsen, E.T.2
Scavenius, C.3
Nikolajsen, C.L.4
Thøgersen, I.B.5
Vorum, H.6
Enghild, J.J.7
|