-
1
-
-
81855206235
-
Geobacter: the microbe electric's physiology, ecology, and practical applications
-
Lovley DR, Ueki T, Zhang T, Malvankar NS, Shrestha PM, Flanagan KA, Aklujkar M, Butler JE, Giloteaux L, Rotaru AE, Holmes DE, Franks AE, Orellana R, Risso C, Nevin KP. Geobacter: the microbe electric's physiology, ecology, and practical applications. Adv Microb Physiol 2011, 59:1-100.
-
(2011)
Adv Microb Physiol
, vol.59
, pp. 1-100
-
-
Lovley, D.R.1
Ueki, T.2
Zhang, T.3
Malvankar, N.S.4
Shrestha, P.M.5
Flanagan, K.A.6
Aklujkar, M.7
Butler, J.E.8
Giloteaux, L.9
Rotaru, A.E.10
Holmes, D.E.11
Franks, A.E.12
Orellana, R.13
Risso, C.14
Nevin, K.P.15
-
2
-
-
0037337606
-
Electricity production by Geobacter sulfurreducens attached to electrodes
-
10.1128/AEM.69.3.1548-1555.2003, 150094, 12620842
-
Bond DR, Lovley DR. Electricity production by Geobacter sulfurreducens attached to electrodes. Appl Environ Microbiol 2003, 69(3):1548-1555. 10.1128/AEM.69.3.1548-1555.2003, 150094, 12620842.
-
(2003)
Appl Environ Microbiol
, vol.69
, Issue.3
, pp. 1548-1555
-
-
Bond, D.R.1
Lovley, D.R.2
-
3
-
-
77953160485
-
Microbial fuel cells, a current review
-
Franks AE, Nevin KP. Microbial fuel cells, a current review. Energies 2010, 3:899-919.
-
(2010)
Energies
, vol.3
, pp. 899-919
-
-
Franks, A.E.1
Nevin, K.P.2
-
4
-
-
51649118803
-
Power output and columbic efficiencies from biofilms of Geobacter sulfurreducens comparable to mixed community microbial fuel cells
-
10.1111/j.1462-2920.2008.01675.x, 18564184
-
Nevin KP, Richter H, Covalla SF, Johnson JP, Woodard TL, Orloff AL, Jia H, Zhang M, Lovley DR. Power output and columbic efficiencies from biofilms of Geobacter sulfurreducens comparable to mixed community microbial fuel cells. Environ Microbiol 2008, 10(10):2505-2514. 10.1111/j.1462-2920.2008.01675.x, 18564184.
-
(2008)
Environ Microbiol
, vol.10
, Issue.10
, pp. 2505-2514
-
-
Nevin, K.P.1
Richter, H.2
Covalla, S.F.3
Johnson, J.P.4
Woodard, T.L.5
Orloff, A.L.6
Jia, H.7
Zhang, M.8
Lovley, D.R.9
-
5
-
-
67650085480
-
Selection of a variant of Geobacter sulfurreducens with enhanced capacity for current production in microbial fuel cells
-
10.1016/j.bios.2009.05.004, 19487117
-
Yi H, Nevin KP, Kim BC, Franks AE, Klimes A, Tender LM, Lovley DR. Selection of a variant of Geobacter sulfurreducens with enhanced capacity for current production in microbial fuel cells. Biosens Bioelectron 2009, 24(12):3498-3503. 10.1016/j.bios.2009.05.004, 19487117.
-
(2009)
Biosens Bioelectron
, vol.24
, Issue.12
, pp. 3498-3503
-
-
Yi, H.1
Nevin, K.P.2
Kim, B.C.3
Franks, A.E.4
Klimes, A.5
Tender, L.M.6
Lovley, D.R.7
-
6
-
-
80052557316
-
Tunable metallic-like conductivity in microbial nanowire networks
-
10.1038/nnano.2011.119, 21822253
-
Malvankar NS, Vargas M, Nevin KP, Franks AE, Leang C, Kim BC, Inoue K, Mester T, Covalla SF, Johnson JP, Rotello VM, Tuominen MT, Lovley DR. Tunable metallic-like conductivity in microbial nanowire networks. Nat Nanotechnol 2011, 6(9):573-579. 10.1038/nnano.2011.119, 21822253.
-
(2011)
Nat Nanotechnol
, vol.6
, Issue.9
, pp. 573-579
-
-
Malvankar, N.S.1
Vargas, M.2
Nevin, K.P.3
Franks, A.E.4
Leang, C.5
Kim, B.C.6
Inoue, K.7
Mester, T.8
Covalla, S.F.9
Johnson, J.P.10
Rotello, V.M.11
Tuominen, M.T.12
Lovley, D.R.13
-
7
-
-
77956203114
-
De novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads
-
10.1371/journal.pone.0010922, 2882325, 20544019
-
Nagarajan H, Butler JE, Klimes A, Qiu Y, Zengler K, Ward J, Young ND, Methe BA, Palsson BO, Lovley DR, Barrett CL. De novo assembly of the complete genome of an enhanced electricity-producing variant of Geobacter sulfurreducens using only short reads. PLoS One 2010, 5(6):e10922. 10.1371/journal.pone.0010922, 2882325, 20544019.
-
(2010)
PLoS One
, vol.5
, Issue.6
-
-
Nagarajan, H.1
Butler, J.E.2
Klimes, A.3
Qiu, Y.4
Zengler, K.5
Ward, J.6
Young, N.D.7
Methe, B.A.8
Palsson, B.O.9
Lovley, D.R.10
Barrett, C.L.11
-
8
-
-
0346243803
-
Genome of Geobacter sulfurreducens: metal reduction in subsurface environments
-
10.1126/science.1088727, 14671304
-
Methe BA, Nelson KE, Eisen JA, Paulsen IT, Nelson W, Heidelberg JF, Wu D, Wu M, Ward N, Beanan MJ, Dodson RJ, Madupu R, Brinkac LM, Daugherty SC, DeBoy RT, Durkin AS, Gwinn M, Kolonay JF, Sullivan SA, Haft DH, Selengut J, Davidsen TM, Zafar N, White O, Tran B, Romero C, Forberger HA, Weidman J, Khouri H, Feldblyum TV, Utterback TR, Van Aken SE, Lovley DR, Fraser CM. Genome of Geobacter sulfurreducens: metal reduction in subsurface environments. Science 2003, 302(5652):1967-1969. 10.1126/science.1088727, 14671304.
-
(2003)
Science
, vol.302
, Issue.5652
, pp. 1967-1969
-
-
Methe, B.A.1
Nelson, K.E.2
Eisen, J.A.3
Paulsen, I.T.4
Nelson, W.5
Heidelberg, J.F.6
Wu, D.7
Wu, M.8
Ward, N.9
Beanan, M.J.10
Dodson, R.J.11
Madupu, R.12
Brinkac, L.M.13
Daugherty, S.C.14
DeBoy, R.T.15
Durkin, A.S.16
Gwinn, M.17
Kolonay, J.F.18
Sullivan, S.A.19
Haft, D.H.20
Selengut, J.21
Davidsen, T.M.22
Zafar, N.23
White, O.24
Tran, B.25
Romero, C.26
Forberger, H.A.27
Weidman, J.28
Khouri, H.29
Feldblyum, T.V.30
Utterback, T.R.31
Van Aken, S.E.32
Lovley, D.R.33
Fraser, C.M.34
more..
-
9
-
-
33846057724
-
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
-
1716718, 17130148
-
Pruitt KD, Tatusova T, Maglott DR. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res 2007, 35(Database issue):D61-D65. 1716718, 17130148.
-
(2007)
Nucleic Acids Res
, vol.35
, Issue.DATABASE ISSUE
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
10
-
-
77954761569
-
Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow
-
10.1038/nrmicro2382, 20601965
-
Wozniak RA, Waldor MK. Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow. Nat Rev Microbiol 2010, 8(8):552-563. 10.1038/nrmicro2382, 20601965.
-
(2010)
Nat Rev Microbiol
, vol.8
, Issue.8
, pp. 552-563
-
-
Wozniak, R.A.1
Waldor, M.K.2
-
11
-
-
0842309140
-
Diversity of structures and properties among catalases
-
10.1007/s00018-003-3206-5, 14745498
-
Chelikani P, Fita I, Loewen PC. Diversity of structures and properties among catalases. Cell Mol Life Sci 2004, 61(2):192-208. 10.1007/s00018-003-3206-5, 14745498.
-
(2004)
Cell Mol Life Sci
, vol.61
, Issue.2
, pp. 192-208
-
-
Chelikani, P.1
Fita, I.2
Loewen, P.C.3
-
12
-
-
0242608621
-
Pathways of oxidative damage
-
10.1146/annurev.micro.57.030502.090938, 14527285
-
Imlay JA. Pathways of oxidative damage. Annu Rev Microbiol 2003, 57:395-418. 10.1146/annurev.micro.57.030502.090938, 14527285.
-
(2003)
Annu Rev Microbiol
, vol.57
, pp. 395-418
-
-
Imlay, J.A.1
-
13
-
-
77954948121
-
Interference with histidyl-tRNA synthetase by a CRISPR spacer sequence as a factor in the evolution of Pelobacter carbinolicus
-
10.1186/1471-2148-10-230, 2923632, 20667132
-
Aklujkar M, Lovley DR. Interference with histidyl-tRNA synthetase by a CRISPR spacer sequence as a factor in the evolution of Pelobacter carbinolicus. BMC Evol Biol 2010, 10(1):230. 10.1186/1471-2148-10-230, 2923632, 20667132.
-
(2010)
BMC Evol Biol
, vol.10
, Issue.1
, pp. 230
-
-
Aklujkar, M.1
Lovley, D.R.2
-
14
-
-
79959319829
-
CRISPR-based adaptive immune systems
-
10.1016/j.mib.2011.03.005, 3119747, 21531607
-
Terns MP, Terns RM. CRISPR-based adaptive immune systems. Curr Opin Microbiol 2011, 14(3):321-327. 10.1016/j.mib.2011.03.005, 3119747, 21531607.
-
(2011)
Curr Opin Microbiol
, vol.14
, Issue.3
, pp. 321-327
-
-
Terns, M.P.1
Terns, R.M.2
-
15
-
-
33144470047
-
Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling
-
10.1128/AEM.72.2.1558-1568.2006, 1392927, 16461711
-
Mahadevan R, Bond DR, Butler JE, Esteve-Nunez A, Coppi MV, Palsson BO, Schilling CH, Lovley DR. Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling. Appl Environ Microbiol 2006, 72(2):1558-1568. 10.1128/AEM.72.2.1558-1568.2006, 1392927, 16461711.
-
(2006)
Appl Environ Microbiol
, vol.72
, Issue.2
, pp. 1558-1568
-
-
Mahadevan, R.1
Bond, D.R.2
Butler, J.E.3
Esteve-Nunez, A.4
Coppi, M.V.5
Palsson, B.O.6
Schilling, C.H.7
Lovley, D.R.8
-
16
-
-
40149105737
-
Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens
-
10.1371/journal.pcbi.0040036, 2233667, 18266464
-
Segura D, Mahadevan R, Juarez K, Lovley DR. Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens. PLoS Comput Biol 2008, 4(2):e36. 10.1371/journal.pcbi.0040036, 2233667, 18266464.
-
(2008)
PLoS Comput Biol
, vol.4
, Issue.2
-
-
Segura, D.1
Mahadevan, R.2
Juarez, K.3
Lovley, D.R.4
-
17
-
-
0028050079
-
Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism
-
201883, 7527204
-
Caccavo F, Lonergan DJ, Lovley DR, Davis M, Stolz JF, McInerney MJ. Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism. Appl Environ Microbiol 1994, 60(10):3752-3759. 201883, 7527204.
-
(1994)
Appl Environ Microbiol
, vol.60
, Issue.10
, pp. 3752-3759
-
-
Caccavo, F.1
Lonergan, D.J.2
Lovley, D.R.3
Davis, M.4
Stolz, J.F.5
McInerney, M.J.6
-
18
-
-
80255137210
-
Composition and function of cytochrome c biogenesis System II
-
10.1111/j.1742-4658.2011.08374.x, 21955752
-
Simon J, Hederstedt L. Composition and function of cytochrome c biogenesis System II. FEBS J 2011, 278(22):4179-4188. 10.1111/j.1742-4658.2011.08374.x, 21955752.
-
(2011)
FEBS J
, vol.278
, Issue.22
, pp. 4179-4188
-
-
Simon, J.1
Hederstedt, L.2
-
19
-
-
66949152917
-
Thermodynamic characterization of the redox centres in a representative domain of a novel c-type multihaem cytochrome
-
10.1042/BJ20082428, 19351328
-
Morgado L, Fernandes AP, Londer YY, Pokkuluri PR, Schiffer M, Salgueiro CA. Thermodynamic characterization of the redox centres in a representative domain of a novel c-type multihaem cytochrome. Biochem J 2009, 420(3):485-492. 10.1042/BJ20082428, 19351328.
-
(2009)
Biochem J
, vol.420
, Issue.3
, pp. 485-492
-
-
Morgado, L.1
Fernandes, A.P.2
Londer, Y.Y.3
Pokkuluri, P.R.4
Schiffer, M.5
Salgueiro, C.A.6
-
20
-
-
77953645311
-
Alignment of the c-type cytochrome OmcS along pili of Geobacter sulfurreducens
-
10.1128/AEM.00023-10, 2893476, 20400557
-
Leang C, Qian X, Mester T, Lovley DR. Alignment of the c-type cytochrome OmcS along pili of Geobacter sulfurreducens. Appl Environ Microbiol 2010, 76(12):4080-4084. 10.1128/AEM.00023-10, 2893476, 20400557.
-
(2010)
Appl Environ Microbiol
, vol.76
, Issue.12
, pp. 4080-4084
-
-
Leang, C.1
Qian, X.2
Mester, T.3
Lovley, D.R.4
-
21
-
-
21344461500
-
Extracellular electron transfer via microbial nanowires
-
10.1038/nature03661, 15973408
-
Reguera G, McCarthy KD, Mehta T, Nicoll JS, Tuominen MT, Lovley DR. Extracellular electron transfer via microbial nanowires. Nature 2005, 435(7045):1098-1101. 10.1038/nature03661, 15973408.
-
(2005)
Nature
, vol.435
, Issue.7045
, pp. 1098-1101
-
-
Reguera, G.1
McCarthy, K.D.2
Mehta, T.3
Nicoll, J.S.4
Tuominen, M.T.5
Lovley, D.R.6
-
22
-
-
66249098568
-
Anode biofilm transcriptomics reveals outer surface components essential for high density current production in Geobacter sulfurreducens fuel cells
-
10.1371/journal.pone.0005628, 2680965, 19461962
-
Nevin KP, Kim BC, Glaven RH, Johnson JP, Woodard TL, Methe BA, Didonato RJ, Covalla SF, Franks AE, Liu A, Lovley DR. Anode biofilm transcriptomics reveals outer surface components essential for high density current production in Geobacter sulfurreducens fuel cells. PLoS One 2009, 4(5):e5628. 10.1371/journal.pone.0005628, 2680965, 19461962.
-
(2009)
PLoS One
, vol.4
, Issue.5
-
-
Nevin, K.P.1
Kim, B.C.2
Glaven, R.H.3
Johnson, J.P.4
Woodard, T.L.5
Methe, B.A.6
Didonato, R.J.7
Covalla, S.F.8
Franks, A.E.9
Liu, A.10
Lovley, D.R.11
-
23
-
-
79951630056
-
Identification of an extracellular polysaccharide network essential for cytochrome anchoring and biofilm formation in Geobacter sulfurreducens
-
10.1128/JB.01092-10, 3067572, 21169487
-
Rollefson JB, Stephen CS, Tien M, Bond DR. Identification of an extracellular polysaccharide network essential for cytochrome anchoring and biofilm formation in Geobacter sulfurreducens. J Bacteriol 2011, 193(5):1023-1033. 10.1128/JB.01092-10, 3067572, 21169487.
-
(2011)
J Bacteriol
, vol.193
, Issue.5
, pp. 1023-1033
-
-
Rollefson, J.B.1
Stephen, C.S.2
Tien, M.3
Bond, D.R.4
-
24
-
-
33747119626
-
A putative multicopper protein secreted by an atypical type II secretion system involved in the reduction of insoluble electron acceptors in Geobacter sulfurreducens
-
Mehta T, Childers SE, Glaven R, Lovley DR, Mester T. A putative multicopper protein secreted by an atypical type II secretion system involved in the reduction of insoluble electron acceptors in Geobacter sulfurreducens. Microbiology 2006, 152(Pt 8):2257-2264.
-
(2006)
Microbiology
, vol.152
, Issue.PART 8
, pp. 2257-2264
-
-
Mehta, T.1
Childers, S.E.2
Glaven, R.3
Lovley, D.R.4
Mester, T.5
-
25
-
-
46249094501
-
Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes
-
Holmes DE, Mester T, O'Neil RA, Perpetua LA, Larrahondo MJ, Glaven R, Sharma ML, Ward JE, Nevin KP, Lovley DR. Genes for two multicopper proteins required for Fe(III) oxide reduction in Geobacter sulfurreducens have different expression patterns both in the subsurface and on energy-harvesting electrodes. Microbiology 2008, 154(Pt 5):1422-1435.
-
(2008)
Microbiology
, vol.154
, Issue.PART 5
, pp. 1422-1435
-
-
Holmes, D.E.1
Mester, T.2
O'Neil, R.A.3
Perpetua, L.A.4
Larrahondo, M.J.5
Glaven, R.6
Sharma, M.L.7
Ward, J.E.8
Nevin, K.P.9
Lovley, D.R.10
-
26
-
-
77349123810
-
Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes
-
10.1186/1471-2164-11-40, 2825233, 20078895
-
Butler JE, Young ND, Lovley DR. Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes. BMC Genomics 2010, 11:40. 10.1186/1471-2164-11-40, 2825233, 20078895.
-
(2010)
BMC Genomics
, vol.11
, pp. 40
-
-
Butler, J.E.1
Young, N.D.2
Lovley, D.R.3
-
27
-
-
33745202132
-
Microarray and genetic analysis of electron transfer to electrodes in Geobacter sulfurreducens
-
10.1111/j.1462-2920.2006.01065.x, 16958761
-
Holmes DE, Chaudhuri SK, Nevin KP, Mehta T, Methe BA, Liu A, Ward JE, Woodard TL, Webster J, Lovley DR. Microarray and genetic analysis of electron transfer to electrodes in Geobacter sulfurreducens. Environ Microbiol 2006, 8(10):1805-1815. 10.1111/j.1462-2920.2006.01065.x, 16958761.
-
(2006)
Environ Microbiol
, vol.8
, Issue.10
, pp. 1805-1815
-
-
Holmes, D.E.1
Chaudhuri, S.K.2
Nevin, K.P.3
Mehta, T.4
Methe, B.A.5
Liu, A.6
Ward, J.E.7
Woodard, T.L.8
Webster, J.9
Lovley, D.R.10
-
28
-
-
23944477958
-
A novel Geobacteraceae-specific outer membrane protein J (OmpJ) is essential for electron transport to Fe(III) and Mn(IV) oxides in Geobacter sulfurreducens
-
10.1186/1471-2180-5-41, 1186022, 16000176
-
Afkar E, Reguera G, Schiffer M, Lovley DR. A novel Geobacteraceae-specific outer membrane protein J (OmpJ) is essential for electron transport to Fe(III) and Mn(IV) oxides in Geobacter sulfurreducens. BMC Microbiol 2005, 5:41. 10.1186/1471-2180-5-41, 1186022, 16000176.
-
(2005)
BMC Microbiol
, vol.5
, pp. 41
-
-
Afkar, E.1
Reguera, G.2
Schiffer, M.3
Lovley, D.R.4
-
29
-
-
0030449160
-
Polyphasic characterization of the genus Leptothrix: New descriptions of Leptothrix mobilis sp. nov. and Leptothrix discophora sp. nov. nom. rev. and emended description of Leptothrix cholodnii emend
-
Spring S, Kampfer P, Ludwig W, Schleifer KH. Polyphasic characterization of the genus Leptothrix: New descriptions of Leptothrix mobilis sp. nov. and Leptothrix discophora sp. nov. nom. rev. and emended description of Leptothrix cholodnii emend. Syst Appl Microbiol 1996, 19(4):634-643.
-
(1996)
Syst Appl Microbiol
, vol.19
, Issue.4
, pp. 634-643
-
-
Spring, S.1
Kampfer, P.2
Ludwig, W.3
Schleifer, K.H.4
-
30
-
-
0034746567
-
CueR (YbbI) of Escherichia coli is a MerR family regulator controlling expression of the copper exporter CopA
-
10.1046/j.1365-2958.2001.02264.x, 11136469
-
Stoyanov JV, Hobman JL, Brown NL. CueR (YbbI) of Escherichia coli is a MerR family regulator controlling expression of the copper exporter CopA. Mol Microbiol 2001, 39(2):502-511. 10.1046/j.1365-2958.2001.02264.x, 11136469.
-
(2001)
Mol Microbiol
, vol.39
, Issue.2
, pp. 502-511
-
-
Stoyanov, J.V.1
Hobman, J.L.2
Brown, N.L.3
-
31
-
-
50549104615
-
Geobacter sulfurreducens strain engineered for increased rates of respiration
-
10.1016/j.ymben.2008.06.005, 18644460
-
Izallalen M, Mahadevan R, Burgard A, Postier B, Didonato R, Sun J, Schilling CH, Lovley DR. Geobacter sulfurreducens strain engineered for increased rates of respiration. Metab Eng 2008, 10(5):267-275. 10.1016/j.ymben.2008.06.005, 18644460.
-
(2008)
Metab Eng
, vol.10
, Issue.5
, pp. 267-275
-
-
Izallalen, M.1
Mahadevan, R.2
Burgard, A.3
Postier, B.4
Didonato, R.5
Sun, J.6
Schilling, C.H.7
Lovley, D.R.8
-
32
-
-
58149203237
-
CDD: specific functional annotation with the Conserved Domain Database
-
2686570, 18984618
-
Marchler-Bauer A, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Tasneem A, Thanki N, Yamashita RA, Zhang D, Zhang N, Bryant SH. CDD: specific functional annotation with the Conserved Domain Database. Nucleic Acids Res 2009, 37(Database issue):D205-D210. 2686570, 18984618.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.DATABASE ISSUE
-
-
Marchler-Bauer, A.1
Anderson, J.B.2
Chitsaz, F.3
Derbyshire, M.K.4
DeWeese-Scott, C.5
Fong, J.H.6
Geer, L.Y.7
Geer, R.C.8
Gonzales, N.R.9
Gwadz, M.10
He, S.11
Hurwitz, D.I.12
Jackson, J.D.13
Ke, Z.14
Lanczycki, C.J.15
Liebert, C.A.16
Liu, C.17
Lu, F.18
Lu, S.19
Marchler, G.H.20
Mullokandov, M.21
Song, J.S.22
Tasneem, A.23
Thanki, N.24
Yamashita, R.A.25
Zhang, D.26
Zhang, N.27
Bryant, S.H.28
more..
-
33
-
-
75549088819
-
MicrobesOnline: an integrated portal for comparative and functional genomics
-
2808868, 19906701
-
Dehal PS, Joachimiak MP, Price MN, Bates JT, Baumohl JK, Chivian D, Friedland GD, Huang KH, Keller K, Novichkov PS, Dubchak IL, Alm EJ, Arkin AP. MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic Acids Res 2010, 38(Database issue):D396-D400. 2808868, 19906701.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.DATABASE ISSUE
-
-
Dehal, P.S.1
Joachimiak, M.P.2
Price, M.N.3
Bates, J.T.4
Baumohl, J.K.5
Chivian, D.6
Friedland, G.D.7
Huang, K.H.8
Keller, K.9
Novichkov, P.S.10
Dubchak, I.L.11
Alm, E.J.12
Arkin, A.P.13
-
34
-
-
3543051830
-
Mauve: multiple alignment of conserved genomic sequence with rearrangements
-
10.1101/gr.2289704, 442156, 15231754
-
Darling AC, Mau B, Blattner FR, Perna NT. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res 2004, 14(7):1394-1403. 10.1101/gr.2289704, 442156, 15231754.
-
(2004)
Genome Res
, vol.14
, Issue.7
, pp. 1394-1403
-
-
Darling, A.C.1
Mau, B.2
Blattner, F.R.3
Perna, N.T.4
-
35
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
10.1093/nar/25.17.3389, 146917, 9254694
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25(17):3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
36
-
-
69649109364
-
Circos: an information aesthetic for comparative genomics
-
10.1101/gr.092759.109, 2752132, 19541911
-
Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, Marra MA. Circos: an information aesthetic for comparative genomics. Genome Res 2009, 19(9):1639-1645. 10.1101/gr.092759.109, 2752132, 19541911.
-
(2009)
Genome Res
, vol.19
, Issue.9
, pp. 1639-1645
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
Horsman, D.6
Jones, S.J.7
Marra, M.A.8
-
37
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
da Huang W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009, 4(1):44-57.
-
(2009)
Nat Protoc
, vol.4
, Issue.1
, pp. 44-57
-
-
da Huang, W.1
Sherman, B.T.2
Lempicki, R.A.3
-
38
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
10.1038/75556, 3037419, 10802651
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G. Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 2000, 25(1):25-29. 10.1038/75556, 3037419, 10802651.
-
(2000)
Nat Genet
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
39
-
-
0030660581
-
A genomic perspective on protein families
-
10.1126/science.278.5338.631, 9381173
-
Tatusov RL, Koonin EV, Lipman DJ. A genomic perspective on protein families. Science 1997, 278(5338):631-637. 10.1126/science.278.5338.631, 9381173.
-
(1997)
Science
, vol.278
, Issue.5338
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
40
-
-
0842330093
-
The iProClass integrated database for protein functional analysis
-
10.1016/j.compbiolchem.2003.10.003, 15022647
-
Wu CH, Huang H, Nikolskaya A, Hu Z, Barker WC. The iProClass integrated database for protein functional analysis. Comput Biol Chem 2004, 28(1):87-96. 10.1016/j.compbiolchem.2003.10.003, 15022647.
-
(2004)
Comput Biol Chem
, vol.28
, Issue.1
, pp. 87-96
-
-
Wu, C.H.1
Huang, H.2
Nikolskaya, A.3
Hu, Z.4
Barker, W.C.5
-
41
-
-
58149203231
-
InterPro: the integrative protein signature database
-
2686546, 18940856
-
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJ, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C. InterPro: the integrative protein signature database. Nucleic Acids Res 2009, 37(Database issue):D211-D215. 2686546, 18940856.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.DATABASE ISSUE
-
-
Hunter, S.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
Binns, D.6
Bork, P.7
Das, U.8
Daugherty, L.9
Duquenne, L.10
Finn, R.D.11
Gough, J.12
Haft, D.13
Hulo, N.14
Kahn, D.15
Kelly, E.16
Laugraud, A.17
Letunic, I.18
Lonsdale, D.19
Lopez, R.20
Madera, M.21
Maslen, J.22
McAnulla, C.23
McDowall, J.24
Mistry, J.25
Mitchell, A.26
Mulder, N.27
Natale, D.28
Orengo, C.29
Quinn, A.F.30
Selengut, J.D.31
Sigrist, C.J.32
Thimma, M.33
Thomas, P.D.34
Valentin, F.35
Wilson, D.36
Wu, C.H.37
Yeats, C.38
more..
|