Determination of histone methylation in mono- and dicotyledonous plants

Methods in Molecular Biology

Volumn 877, Issue , 2012, Pages 313-324

  Nic Can, Geovanny I ^a   De La Peña, Clelia ^b  

^a UNIVERSIDAD AUTÓNOMA DE YUCATÁN   (Mexico)

^b CENTRO DE INVESTIGACIÓN CIENTÍFICA DE YUCATÁN   (Mexico)

Author keywords

Agave fourcroydes; Coffea canephora; Epigenetics; Histone methylation

Indexed keywords

HISTONE H3; LYSINE; NUCLEAR PROTEIN; PLANT PROTEIN; HISTONE;

CONTROLLED STUDY; DCOTYLEDONOUS PLANT; EPIGENETICS; GLOBAL CHANGE; HISTONE METHYLATION; IMMUNODETECTION; IN VITRO STUDY; MONOCOT; NONHUMAN; PLANT; PROTEIN ANALYSIS; PROTEIN ISOLATION; PROTEIN PROCESSING; AGAVE; ARTICLE; CHEMISTRY; COFFEE; GENETICS; IMMUNOASSAY; METABOLISM; METHYLATION;

AGAVE; COFFEA; HISTONES; IMMUNOASSAY; METHYLATION; NUCLEAR PROTEINS;

EID: 84865980093     PISSN: 10643745     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-1-61779-818-4_24     Document Type: Chapter

References (27)

1. Vaquero A, Loyola A, Reinberg D (2003) The constantly changing face of chromatin. Sci Agni Know Env 4:1–16
2. Bowler C, Benvenuto G, Laflamme P et al (2004) Chromatin techniques for plant cells. Plant J 39:776–789
3. Cheung P, Lau P (2005) Epigenetic regulation by histone methylation and histone variants. Mol Endocrinol 19:563–573
4. Kouzarides T, Berger LS (2007) Chromatin modifications and their mechanism of action. In: Allis CD, Jenuwien T, Reinberg D et al (eds) Epigenetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, pp 191–209
5. Zhang K, Sridhar V, Zhu J, Kapoor A, Zhu JK (2007) Distintive core of histone post-translational modification patterns in Arabidopsis thaliana. PLoS One 11:1–11
6. Kouzarides T (2007) Chromatin modifications and their function. Cell 128:693–705
7. Yang W, Jiang D, Jiang J et al (2010) A plantspecific histone H3 lysine 4 demethylase represses the floral transition in Arabidopsis. Plant J 62:663–673
8. Liu C, Lu F, Cui X et al (2010) Histone methylation in higher plants. Annu Rev Plant Biol 61:395–420
9. Xu L, Zhao Z, Dong A et al (2008) Diand tribut not monomethylation on histone H3 lysine 36 marks active transcription of genes involved in flowering time regulation and other processes in Arabidopsis thaliana. Mol Cell Biol 28:1348–1360
10. Jackson J, Johnson L, Jasencakova Z et al (2004) Dimethylation of histone H3 lysine 9 is critical mark for DNA methylation and gene silencing in Arabidopsis thaliana. Chromosoma 112:308–315
11. Jacob Y, Feng M, LeBlanc C et al (2009) ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing. Nat Struct Mol Biol 16: 763–769
12. Jacob Y, Stroud H, LeBlanc C et al (2010) Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases. Nature 466:987–991
13. Pontvianne F, Blevins T, Pickaard CS (2010) Arabidopsis histone lysine methyltransferases. Adv Bot Res 53:1–22
14. Zhang X, Clarenz O, Cokus S et al (2007) Whole-genome analysis of histone H3 lysine 27 trimethylation in Arabidopsis. PLoS Biol 5:1026–1035
15. Lee HR, Zhang W, Langdon T et al (2005) Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species. Proc Natl Acad Sci USA 102:11793–11798
16. Deal RB, Henikoff J, Henikoff S (2010) Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones. Science 328:1161–1164
17. Deal RB, Topp CN, McKinney EC et al (2007) Repression of flowering in Arabidopsis requires activation of FLOWERING LOCUS C expression by histone variant H2A.Z. Plant Cell 19:74–83
18. Law RD, Suttle JC (2005) Chromatin remodelling in plant cell culture: patterns of DNA methylation and histone H3 and H4 acetylation vary during growth of asynchrous potato cell suspensions. Plant Physiol Biochem 43:527–534
19. Jackson JP, Johnson L, Jasencakova Z et al (2004) Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana. Chromosoma 112:308–315
20. Amasino R (2010) Seasonal and developmental timing of flowering. Plant J 61:1001–1013
21. Bruce T, Mazur E, Napier J et al (2007) Stressful “memories” of plants: evidence and possible mechanisms. Plant Sci 173:603–608
22. Martienssen RA, Colot V (2001) DNA methylation and epigenetic inheritance in plants and filamentous fungi. Science 293:1070–1074
23. Verdeil JL, Alemanno L, Niememack N et al (2007) Pluripotent versus totipotent plant stem cells: dependence versus autonomy? Trends Plant Sci 12:245–252
24. Shen WH, Meyer D (2004) Ectopic expression of the Nt SET1 histone methyltransferase inhibits cell expansion, and affects cell division and differentiation in tobacco plants. Plant Cell Physiol 45:1715–1719
25. Liang YK, Wang Y, Zang Y et al (2003) OsSET1, a novel SET-domain-containing gene from rice. J Exp Bot 54:1995–1996
26. Ding Y, Wang X, Su L et al (2007) SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice. Plant Cell 19:9–22
27. Quiroz-Figueroa FR, Monforte-González M, Galaz-Avalos RM et al (2006) Direct somatic embryogenesis in Coffea canephora. In: Loyola-Vargas VM, Vázquez-Flota FA (eds) Plant cell culture protocols. Humana, Totowa, NJ, pp 111–117