Microarray analysis of differential gene expression in sensitive and resistant pig to Escherichia coli F18

Animal Genetics

Volumn 43, Issue 5, 2012, Pages 525-534

  Bao, W B ^a   Ye, L ^a   Pan, Z Y ^a   Zhu, J ^a   Du, Z D ^a   Zhu, G Q ^b   Huang, X G ^b   Wu, S L ^a  

^a YANGZHOU UNIVERSITY   (China)

^b Jiangsu Engineering Research Centre for Molecular Breeding of Pig   (China)

Author keywords

Escherichia coli F18; gene expression profile; gene microarray; pig

Indexed keywords

ADHESIN; TRANSCRIPTOME;

ANIMAL; ANIMAL DISEASE; ARTICLE; CYTOLOGY; DISEASE RESISTANCE; DNA MICROARRAY; ENTEROTOXIGENIC ESCHERICHIA COLI; ESCHERICHIA COLI INFECTION; GENETIC SCREENING; GENETICS; GENOTYPE; IMMUNOLOGY; INTESTINE; METABOLISM; NEWBORN; REAL TIME POLYMERASE CHAIN REACTION; SWINE; SWINE DISEASE; WEANING;

ADHESINS, BACTERIAL; ANIMALS; ANIMALS, NEWBORN; DISEASE RESISTANCE; ENTEROTOXIGENIC ESCHERICHIA COLI; ESCHERICHIA COLI INFECTIONS; GENETIC TESTING; GENOTYPE; INTESTINES; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REAL-TIME POLYMERASE CHAIN REACTION; SWINE; SWINE DISEASES; TRANSCRIPTOME; WEANING;

ANIMALIA; ESCHERICHIA COLI; SUIDAE;

EID: 84865861600     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2011.02287.x     Document Type: Article

References (34)

1. Ashburner M., Ball C.A., Blake J.A., et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature Genetics 25, 25-9. (Pubitemid 30257031)
2. Bao W.B., Wu S.L., Musa H.H., Zhu G.Q., &, Chen G.H., (2008) Genetic variation at the alpha (1, 2) fucosyltransferase (FUT1) gene in Asian wild boar and Chinese and Western commercial pig breeds. Journal of Animal Breeding and Genetics 125, 427-30.
3. Bertin A.M., &, Duchet-Suchaux M.F., (1991) Relationship between virulence and adherence of various enterotoxigenic Escherichia coli strains to isolated intestinal epithelial cells from Chinese Meishan and European large white pigs. American Journal Veterinary Research 52, 45-9.
4. Bertschinger H.U., &, Pohlenz J., (1983) Bacterial colonization and morphology of the intestine in porcine Escherichia coli enterotoxemia (edema disease). Veterinary Pathology 20, 99-110. (Pubitemid 13150742)
5. David R., &, John T., (1999) Genetics and molecular genetics of the MHC. Reviews in Immunogenetics 1, 21-31.
6. Draghici S., Khatri P., Tarca A.L., Amin K., Done A., Voichita C., Georgescu C., &, Romero R., (2007) A systems biology approach for pathway level analysis. Genome Research 17, 1537-45. (Pubitemid 47529438)
7. Dupuy D., Bertin N., Hidalgo C.A., et al. (2007) Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans. Nature Biotechnology 25, 663-8. (Pubitemid 46897203)
8. Geffrotin C., Popescu C.P., Cribiu E.P., Boscher J., Renard C., Chardon P., &, Vaiman M., (1984) Assignment of MHC in swine to chromosome-7 by in-situ hybridization and serological typing. Annales de Genetique 27, 213-9. (Pubitemid 15193180)
9. Harduin-Lepers A., Recchi M.A., &, Delannoy P., (1995) 1994, the year of sialyltransferases. Glycobiology 5, 741-58. (Pubitemid 26021975)
10. Imberechts H., De Greve H., &, Lintermans P., (1992) The pathogenesis of edema disease in pigs. A review. Veterinary Microbiology 31, 221-33.
11. Jin B.Q., (2003) Cellular and Molecular Immunology. Science Press, Beijing.
12. Kanehisa M., Goto S., Kawashima S., Okuno Y., &, Hattori M., (2004) The KEGG resource for deciphering the genome. Nucleic Acids Research 32, D277-80. (Pubitemid 38081656)
13. Kelm S., &, Schauer R., (1997) Sialic acids in molecular and cellular interactions. International Review of Cytology 175, 137-240. (Pubitemid 27309809)
14. Kirszenbaum M., Renard C., Geffrotin C., Chardon P., &, Vaiman M., (1985) Evidence for mapping pig C4 gene(s) within the pig major histocompatibility complex (SLA). Animal Blood Groups and Biochemical Genetics 16, 65-8.
15. -ΔΔCt method. Methods 25, 402-8. (Pubitemid 34164012)
16. Meijerink E., Fries R., Vogeli P., Masabanda J., Wigger G., Stricker C., Neuenschwander S., Bertschinger H.U., &, Stranzinger G., (1997) Two α (1,2) fucosyltransferase genes on porcine chromosome 6q11 are closely linked to the blood group inhibitor (S) and Escherichia coli F18 receptor (ECF18R) Loci. Mammalian Genome 8, 736-41. (Pubitemid 27439814)
17. Mouricout M., Vedrine B., &, Grange P.H., (1997) Adhesion of K88ab fimbriated E. coli in piglet small intestines in relation with iron transport molecules. Advances in Experimental Medicine and Biology 412, 357-61. (Pubitemid 27263577)
18. Nagy B., &, Fekete P.Z., (1999) Enterotoxigenic Escherichia coli (ETEC) in farm animal. Veterinary Research 30, 259-84. (Pubitemid 129587971)
19. Paulson J.C., &, Colley K.J., (1989) Glycosyltransferases. Structure, localization, and control of cell type-specific glycosylation. Journal of Biological Chemistry 264, 17615-8. (Pubitemid 19279214)
20. Rabin M., Fries R., Singer D., &, Ruddle F., (1985) Assignment of the porcine major histocompatibility complex to chromosome 7 by in situ hybridization. Cytogenetics and Cell Genetics 39, 206-9. (Pubitemid 16248812)
21. Rothschild M.F., Chen H.L., Christian L.L., Lie W.R., Venier L., Cooper M., Briggs C., &, Warner C.M., (1984a) Breed and swine lymphocyte antigen haplotype differences in agglutination titers following vaccination with B. bronchiseptica. Journal of Animal Science 59, 643-9.
22. Rothschild M.F., Zimmerman D.R., Johnson R.K., Venier L., &, Warner C.M., (1984b) SLA haplotype differences in lines of pigs which differ in ovulation rate. Animal Blood Groups and Biochemical Genetics 15, 155-8.
23. Rothschild M.F., Renard C., Bolet G., Dando P., &, Vaiman M., (1986) Effect of swine lymphocyte antigen haplotypes on birth and weaning weights in pigs. Animal Genetics 17, 267-72.
24. Shi Q.S., Xie X.M., Liu X.C., Huang S.Q., &, He C.Q., (2002) Experimental results on enterotoxigenic E. coli F18 receptor genotypes. Hereditas (Beijing) 24, 656-8.
25. Shi Q.S., Huang S.Q., Liu X.C., He C.Q., &, Jiang S., (2003) Polymorphism of E. coli F18 receptor gene in different pig breeds. Acta Genetica Sinica 30, 221-4.
26. Storey J.D., (2002) A direct approach to false discovery rates. Journal of the Royal Statistical Society, Series B 64, 479-98.
27. Storey J.D., (2003) The positive false discovery rate: a Bayesian interpretation and the q-value. Annals of Statistics 31, 2013-35. (Pubitemid 38293903)
28. Storey J.D., Taylor J.E., &, Siegmund D., (2004) Strong control, conservative point estimation, and simultaneous conservative consistency of false discovery rates: a unified approach. Journal of the Royal Statistical Society, Series B 66, 187-205. (Pubitemid 38210666)
29. Vogeli P., Meijerink E., Fries R., Stricker C., &, Bertschinger H.U., (1997) A molecular test for the detection of E. coli F18 receptors: a breakthrough in the struggle against oedema disease and postweaning diarrhoea in swine. Schweizer Archiv fur Tierheilkunde 139, 479-84.
30. Wu S.L., Ju H.P., Bao W.B., Chen G.H., Zhu G.Q., Huang X.G., Hua J.D., Li B.C., &, Yuan Z.W., (2006) Detection of point mutation of porcine α1fucosyltransferase gene by PCR-SSCP approach. Journal of Yangzhou University (Agricultural and Life Sciences Edition) 27, 68-71.
31. Wu S.L., Yuan Z.W., Ju H.P., Huang X.G., Hua J.D., Shen J.L., &, Chen G.H., (2007) Polymorphisms of the FUT1 gene M307 locus in post-weaning Sutai breed piglet and resistance to F18 fimbrial Escherichia coli in vitro. Chinese Journal of Preventive Veterinary Medicine 29, 783-7.
32. Yan X.M., Ren J., Guo Y.M., Ding N.S., Chen K.F., Gao J., Ai H.S., Chen C.Y., Ma J.W., &, Huang L.S., (2003) Research on the genetic variations of 1,2-fucosytransferase (FUT1) gene in 26 pig breeds. Acta Genetica Sinica 30, 830-4. (Pubitemid 37081807)
33. Yi M., Horton J.D., Cohen J.C., Hobbs H.H., &, Stephens R.M., (2006) WholePathwayScope: a comprehensive pathway-based analysis tool for high-throughput data. BMC Bioinformatics 7, 30.
34. Zhu Y.X., &, Li Y., (2007) Modern Molecular Biology. Higher Education Press, Beijing.