-
1
-
-
0038501876
-
Seed dormancy and germination
-
doi: 10.1199/tab.0119
-
Bentsink L, Koornneef M. 2008. Seed dormancy and germination. Arabidopsis Book 6: e0119. doi: 10.1199/tab.0119
-
(2008)
Arabidopsis Book
, vol.6
-
-
Bentsink, L.1
Koornneef, M.2
-
2
-
-
4544252919
-
Chromatin techniques for plant cells
-
Bowler C, Benvenuto G, Laflamme P, Molino D, Probst AV, Tariq M, Paszkowski J. 2004. Chromatin techniques for plant cells. Plant J 39: 776-789.
-
(2004)
Plant J
, vol.39
, pp. 776-789
-
-
Bowler, C.1
Benvenuto, G.2
Laflamme, P.3
Molino, D.4
Probst, A.V.5
Tariq, M.6
Paszkowski, J.7
-
3
-
-
0037453009
-
Integrating regulatory motif discovery and genome-wide expression analysis
-
Conlon EM, Liu XS, Lieb JD, Liu JS. 2003. Integrating regulatory motif discovery and genome-wide expression analysis. Proc Natl Acad Sci 100: 3339-3344.
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 3339-3344
-
-
Conlon, E.M.1
Liu, X.S.2
Lieb, J.D.3
Liu, J.S.4
-
4
-
-
69949147069
-
Phytochromes differentially regulate seed germination responses to light quality and temperature cues during seed maturation
-
Dechaine JM, Gardner G, Weinig C. 2009. Phytochromes differentially regulate seed germination responses to light quality and temperature cues during seed maturation. Plant Cell Environ 32: 1297-1309.
-
(2009)
Plant Cell Environ
, vol.32
, pp. 1297-1309
-
-
Dechaine, J.M.1
Gardner, G.2
Weinig, C.3
-
6
-
-
0037355251
-
Phytochromes B, D, and, E act redundantly to control multiple physiological responses in Arabidopsis
-
Franklin KA, Praekelt U, Stoddart WM, Billingham OE, Halliday KJ, Whitelam GC. 2003. Phytochromes B, D, and, E act redundantly to control multiple physiological responses in Arabidopsis. Plant Physiol 131: 1340-1346.
-
(2003)
Plant Physiol
, vol.131
, pp. 1340-1346
-
-
Franklin, K.A.1
Praekelt, U.2
Stoddart, W.M.3
Billingham, O.E.4
Halliday, K.J.5
Whitelam, G.C.6
-
7
-
-
85047685682
-
Phytochrome E controls light-induced germination of Arabidopsis
-
Hennig L, Stoddart WM, Dieterle M, Whitelam GC, Schafer E. 2002. Phytochrome E controls light-induced germination of Arabidopsis. Plant Physiol 128: 194-200.
-
(2002)
Plant Physiol
, vol.128
, pp. 194-200
-
-
Hennig, L.1
Stoddart, W.M.2
Dieterle, M.3
Whitelam, G.C.4
Schafer, E.5
-
9
-
-
57749094256
-
SOMNUS, a CCCH-type zinc finger protein in Arabidopsis, negatively regulates light-dependent seed germination downstream of PIL5
-
Kim DH, Yamaguchi S, Lim S, Oh E, Park J, Hanada A, Kamiya Y, Choi G. 2008. SOMNUS, a CCCH-type zinc finger protein in Arabidopsis, negatively regulates light-dependent seed germination downstream of PIL5. Plant Cell 20: 1260-1277.
-
(2008)
Plant Cell
, vol.20
, pp. 1260-1277
-
-
Kim, D.H.1
Yamaguchi, S.2
Lim, S.3
Oh, E.4
Park, J.5
Hanada, A.6
Kamiya, Y.7
Choi, G.8
-
10
-
-
84989738125
-
The isolation and characterization of abscisic acid-insensitive mutants of Arabidopsis thaliana
-
Koornneef M, Reuling G, Karssen CM. 1984. The isolation and characterization of abscisic acid-insensitive mutants of Arabidopsis thaliana. Physiol Plant 61: 377-383.
-
(1984)
Physiol Plant
, vol.61
, pp. 377-383
-
-
Koornneef, M.1
Reuling, G.2
Karssen, C.M.3
-
11
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
doi: 10.1186/gb-2009-10-3-r25
-
Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25. doi: 10.1186/gb-2009-10-3-r25
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
12
-
-
78650496396
-
A seed coat bedding assay shows that RGL2-dependent release of abscisic acid by the endosperm controls embryo growth in Arabidopsis dormant seeds
-
Lee KP, Piskurewicz U, Tureckova V, Strnad M, Lopez-Molina L. 2010. A seed coat bedding assay shows that RGL2-dependent release of abscisic acid by the endosperm controls embryo growth in Arabidopsis dormant seeds. Proc Natl Acad Sci 107: 19108-19113.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 19108-19113
-
-
Lee, K.P.1
Piskurewicz, U.2
Tureckova, V.3
Strnad, M.4
Lopez-Molina, L.5
-
14
-
-
0034121176
-
A null mutation in a bZIP factor confers ABA-insensitivity in Arabidopsis thaliana
-
Lopez-Molina L, Chua NH. 2000. A null mutation in a bZIP factor confers ABA-insensitivity in Arabidopsis thaliana. Plant Cell Physiol 41: 541-547.
-
(2000)
Plant Cell Physiol
, vol.41
, pp. 541-547
-
-
Lopez-Molina, L.1
Chua, N.H.2
-
15
-
-
0035836684
-
A postgermination developmental arrest checkpoint is mediated by abscisic acid and requires the ABI5 transcription factor in Arabidopsis
-
Lopez-Molina L, Mongrand S, Chua NH. 2001. A postgermination developmental arrest checkpoint is mediated by abscisic acid and requires the ABI5 transcription factor in Arabidopsis. Proc Natl Acad Sci 98: 4782-4787.
-
(2001)
Proc Natl Acad Sci
, vol.98
, pp. 4782-4787
-
-
Lopez-Molina, L.1
Mongrand, S.2
Chua, N.H.3
-
16
-
-
0036846024
-
ABI5 acts downstream of ABI3 to execute an ABA-dependent growth arrest during germination
-
Lopez-Molina L, Mongrand S, McLachlin DT, Chait BT, Chua NH. 2002. ABI5 acts downstream of ABI3 to execute an ABA-dependent growth arrest during germination. Plant J 32: 317-328.
-
(2002)
Plant J
, vol.32
, pp. 317-328
-
-
Lopez-Molina, L.1
Mongrand, S.2
McLachlin, D.T.3
Chait, B.T.4
Chua, N.H.5
-
17
-
-
33749870468
-
Phytochrome-mediated development in land plants: Red light sensing evolves to meet the challenges of changing light environments
-
Mathews S. 2006. Phytochrome-mediated development in land plants: Red light sensing evolves to meet the challenges of changing light environments. Mol Ecol 15: 3483-3503.
-
(2006)
Mol Ecol
, vol.15
, pp. 3483-3503
-
-
Mathews, S.1
-
18
-
-
33745919059
-
Endospermlimited Brassicaceae seed germination: Abscisic acid inhibits embryo-induced endosperm weakening of Lepidium sativum (cress) and endosperm rupture of cress and Arabidopsis thaliana
-
Muller K, Tintelnot S, Leubner-Metzger G. 2006. Endospermlimited Brassicaceae seed germination: Abscisic acid inhibits embryo-induced endosperm weakening of Lepidium sativum (cress) and endosperm rupture of cress and Arabidopsis thaliana. Plant Cell Physiol 47: 864-877.
-
(2006)
Plant Cell Physiol
, vol.47
, pp. 864-877
-
-
Muller, K.1
Tintelnot, S.2
Leubner-Metzger, G.3
-
19
-
-
0036021399
-
A screen for genes that function in abscisic acid signaling in Arabidopsis thaliana
-
Nambara E, Suzuki M, Abrams S, McCarty DR, Kamiya Y, McCourt P. 2002. A screen for genes that function in abscisic acid signaling in Arabidopsis thaliana. Genetics 161: 1247-1255.
-
(2002)
Genetics
, vol.161
, pp. 1247-1255
-
-
Nambara, E.1
Suzuki, M.2
Abrams, S.3
McCarty, D.R.4
Kamiya, Y.5
McCourt, P.6
-
20
-
-
13744259556
-
PIL5, a phytochrome-interacting basic helix-loop-helix protein, is a key negative regulator of seed germination in Arabidopsis thaliana
-
Oh E, Kim J, Park E, Kim J-I, Kang C, Choi G. 2004. PIL5, a phytochrome-interacting basic helix-loop-helix protein, is a key negative regulator of seed germination in Arabidopsis thaliana. Plant Cell 16: 3045-3058.
-
(2004)
Plant Cell
, vol.16
, pp. 3045-3058
-
-
Oh, E.1
Kim, J.2
Park, E.3
Kim, J.-I.4
Kang, C.5
Choi, G.6
-
21
-
-
33745096514
-
Light activates the degradation of PIL5 protein to promote seed germination through gibberellin in Arabidopsis
-
Oh E, Yamaguchi S, Kamiya Y, Bae G, Chung WI, Choi G. 2006. Light activates the degradation of PIL5 protein to promote seed germination through gibberellin in Arabidopsis. Plant J 47: 124-139.
-
(2006)
Plant J
, vol.47
, pp. 124-139
-
-
Oh, E.1
Yamaguchi, S.2
Kamiya, Y.3
Bae, G.4
Chung, W.I.5
Choi, G.6
-
22
-
-
34250651201
-
PIL5, a phytochrome-interacting bHLH protein, regulates gibberellin responsiveness by binding directly to the GAI and RGA promoters in Arabidopsis seeds
-
Oh E, Yamaguchi S, Hu J, Yusuke J, Jung B, Paik I, Lee HS, Sun T., Kamiya Y, Choi G. 2007. PIL5, a phytochrome-interacting bHLH protein, regulates gibberellin responsiveness by binding directly to the GAI and RGA promoters in Arabidopsis seeds. Plant Cell 19: 1192-1208.
-
(2007)
Plant Cell
, vol.19
, pp. 1192-1208
-
-
Oh, E.1
Yamaguchi, S.2
Hu, J.3
Yusuke, J.4
Jung, B.5
Paik, I.6
Lee, H.S.7
Sun, T.8
Kamiya, Y.9
Choi, G.10
-
23
-
-
79957736101
-
ABI3 and PIL5 collaboratively activate the expression of SOMNUS by directly binding to its promoter in imbibed Arabidopsis seeds
-
Park J, Lee N, Kim W, Lim S, Choi G. 2011. ABI3 and PIL5 collaboratively activate the expression of SOMNUS by directly binding to its promoter in imbibed Arabidopsis seeds. Plant Cell 23: 1404-1415.
-
(2011)
Plant Cell
, vol.23
, pp. 1404-1415
-
-
Park, J.1
Lee, N.2
Kim, W.3
Lim, S.4
Choi, G.5
-
24
-
-
33747492075
-
Arabidopsis ABA INSENSITIVE4 regulates lipid mobilization in the embryo and reveals repression of seed germination by the endosperm
-
Penfield S, Li Y, Gilday AD, Graham S, Graham IA. 2006. Arabidopsis ABA INSENSITIVE4 regulates lipid mobilization in the embryo and reveals repression of seed germination by the endosperm. Plant Cell 18: 1887-1899.
-
(2006)
Plant Cell
, vol.18
, pp. 1887-1899
-
-
Penfield, S.1
Li, Y.2
Gilday, A.D.3
Graham, S.4
Graham, I.A.5
-
25
-
-
57749104906
-
The gibberellic acid signaling repressor RGL2 inhibits Arabidopsis seed germination by stimulating abscisic acid synthesis and ABI5 activity
-
Piskurewicz U, Jikumaru Y, Kinoshita N, Nambara E, Kamiya Y, Lopez-Molina L. 2008. The gibberellic acid signaling repressor RGL2 inhibits Arabidopsis seed germination by stimulating abscisic acid synthesis and ABI5 activity. Plant Cell 20: 2729-2745.
-
(2008)
Plant Cell
, vol.20
, pp. 2729-2745
-
-
Piskurewicz, U.1
Jikumaru, Y.2
Kinoshita, N.3
Nambara, E.4
Kamiya, Y.5
Lopez-Molina, L.6
-
26
-
-
68249161203
-
Far-red light inhibits germination through DELLA-dependent stimulation of ABA synthesis and ABI3 activity
-
Piskurewicz U, Tureckova V, Lacombe E, Lopez-Molina L. 2009. Far-red light inhibits germination through DELLA-dependent stimulation of ABA synthesis and ABI3 activity. EMBO J 28: 2259-2271.
-
(2009)
EMBO J
, vol.28
, pp. 2259-2271
-
-
Piskurewicz, U.1
Tureckova, V.2
Lacombe, E.3
Lopez-Molina, L.4
-
27
-
-
0031200787
-
Seed germination of Arabidopsis thaliana phyA/phyB double mutants is under phytochrome control
-
Poppe C, Schafer E. 1997. Seed germination of Arabidopsis thaliana phyA/phyB double mutants is under phytochrome control. Plant Physiol 114: 1487-1492.
-
(1997)
Plant Physiol
, vol.114
, pp. 1487-1492
-
-
Poppe, C.1
Schafer, E.2
-
28
-
-
0027949428
-
Phytochrome A and Phytochrome B have overlapping but distinct functions in Arabidopsis development
-
Reed JW, Nagatani A, Elich TD, Fagan M, Chory J. 1994. Phytochrome A and Phytochrome B have overlapping but distinct functions in Arabidopsis development. Plant Physiol 104: 1139-1149.
-
(1994)
Plant Physiol
, vol.104
, pp. 1139-1149
-
-
Reed, J.W.1
Nagatani, A.2
Elich, T.D.3
Fagan, M.4
Chory, J.5
-
30
-
-
0028139567
-
The induction of seed germination in Arabidopsis thaliana is regulated principally by Phytochrome B and secondarily by Phytochrome A
-
Shinomura T, Nagatani A, Chory J, Furuya M. 1994. The induction of seed germination in Arabidopsis thaliana is regulated principally by Phytochrome B and secondarily by Phytochrome A. Plant Physiol 104: 363-371.
-
(1994)
Plant Physiol
, vol.104
, pp. 363-371
-
-
Shinomura, T.1
Nagatani, A.2
Chory, J.3
Furuya, M.4
-
31
-
-
0029839477
-
Action spectra for phytochrome A- and B-specific photoinduction of seed germination in Arabidopsis thaliana
-
Shinomura T, Nagatani A, Hanzawa H, Kubota M, Watanabe M, Furuya M. 1996. Action spectra for phytochrome A- and B-specific photoinduction of seed germination in Arabidopsis thaliana. Proc Natl Acad Sci 93: 8129-8133.
-
(1996)
Proc Natl Acad Sci
, vol.93
, pp. 8129-8133
-
-
Shinomura, T.1
Nagatani, A.2
Hanzawa, H.3
Kubota, M.4
Watanabe, M.5
Furuya, M.6
-
32
-
-
77949593933
-
Arabidopsis thaliana life without phytochromes
-
Strasser B, Sanchez-Lamas M, Yanovsky MJ, Casal JJ, Cerdan PD. 2010. Arabidopsis thaliana life without phytochromes. Proc Natl Acad Sci 107: 4776-4781.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 4776-4781
-
-
Strasser, B.1
Sanchez-Lamas, M.2
Yanovsky, M.J.3
Casal, J.J.4
Cerdan, P.D.5
-
34
-
-
0032289116
-
Phytochrome regulation and differential expression of gibberellin 3β-hydroxylase genes in germinating Arabidopsis seeds
-
Yamaguchi S, Smith MW, Brown RG, Kamiya Y, Sun T. 1998. Phytochrome regulation and differential expression of gibberellin 3β-hydroxylase genes in germinating Arabidopsis seeds. Plant Cell 10: 2115-2126.
-
(1998)
Plant Cell
, vol.10
, pp. 2115-2126
-
-
Yamaguchi, S.1
Smith, M.W.2
Brown, R.G.3
Kamiya, Y.4
Sun, T.5
-
35
-
-
53849146020
-
Model-based analysis of ChIP-seq (MACS)
-
doi: 10.1186/gb-2008-9-9-r137
-
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, et al. 2008. Model-based analysis of ChIP-seq (MACS). Genome Biol 9: R137. doi: 10.1186/gb-2008-9-9-r137
-
(2008)
Genome Biol
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
|