Hypolithic microbial communities: Between a rock and a hard place

Environmental Microbiology

Volumn 14, Issue 9, 2012, Pages 2272-2282

  Chan, Yuki ^a   Lacap, Donnabella C ^a   Lau, Maggie C Y ^b   Ha, Kong Ying ^a   Warren Rhodes, Kimberley A ^c   Cockell, Charles S ^d   Cowan, Donald A ^e   Mckay, Christopher P ^c   Pointing, Stephen B ^a,f  

^a UNIVERSITY OF HONG KONG   (Hong Kong)

^b PRINCETON UNIVERSITY   (United States)

^c NASA AMES RESEARCH CENTER   (United States)

^d UNIVERSITY OF EDINBURGH   (United Kingdom)

^e UNIVERSITY OF THE WESTERN CAPE   (South Africa)

^f AUCKLAND UNIVERSITY OF TECHNOLOGY   (New Zealand)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PHENOMENA AND FUNCTIONS; BIODIVERSITY; BIOMASS; DESERT CLIMATE; MICROBIOLOGY; SHORT SURVEY;

BACTERIAL PHYSIOLOGICAL PHENOMENA; BIODIVERSITY; BIOMASS; DESERT CLIMATE; SOIL MICROBIOLOGY;

CYANOBACTERIA;

EID: 84865750443     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2012.02821.x     Document Type: Short Survey

References (53)

1. Azua-Bustos, A., Gonzalez-Silva, C., Mancilla, R.A., Salas, L., Gomez-Silva, B., McKay, C.P., and Vicuna, R. (2011) Hypolithic cyanobacteria supported mainly by fog in the coastal range of the Atacama Desert. Microb Ecol 61: 568-581.
2. Bahl, J., Lau, M.C.Y., Dhanesakaran, V., Smith, G.J.D., Cary, C., Lee, C.K., etal. (2011) Ancient origins determine global biogeography of hot and cold desert cyanobacteria. Nat Commun 2: 163. doi: 10.1038/ncomms1167.
3. Belnap, J. (2003) The world at your feet: desert biological soil crusts. Front Ecol Environ 1: 181-189.
4. Berner, T., and Evanari, M. (1978) The influence of temperature and light penetration on the abundance of the hypolithic algae in the Negev Desert of Israel. Oecologia 33: 255-260.
5. Billi, D., and Potts, M. (2002) Life and death of dried prokaryotes. Res Microbiol 153: 7-12.
6. Billi, D., Friedmann, I.E., Hofer, K.G., Grilli-Caiola, M., and Ocampo-Friedmann, R. (2000) Ionizing-radiation resistance in the desiccation-tolerant cyanobacterium Chroococcidiopsis. Appl Environ Microbiol 66: 1489-1492.
7. Boison, G., Mergel, A., Jolkver, H., and Bothe, H. (2004) Bacterial life and dinitrogen fixation at a gypsum rock. Appl Environ Microbiol 70: 7070-7077.
8. Broady, P.A. (1981) The ecology of sublithic terrestrial algae at the Vestfold Hills, Antarctica. Br Phycol J 16: 231-240.
9. Broady, P.A. (2005) The distribution of terrestrial and hydro-terrestrial algal associations at three locations in southern Victoria Land, Antarctica. Algol Stud 118: 95-112.
10. Budel, B., and Wessels, D.C.J. (1991) Rock inhabiting blue green algae from hot arid regions. Archiv Fur Hydrobiologie 92: 385-398.
11. Cameron, R.E., and Blank, G.B. (1965) Soil studies - microflora of desert regions VIII. Distribution and abundance of microorganisms. Space Programs Summ 4: 193-202.
12. Caruso, T., Chan, Y., Lacap, D.C., McKay, C.P., and Pointing, S.B. (2011) Stochastic and deterministic processes interact to determine global biogeography of arid soil bacteria. ISME J 5: 1406-1413.
13. Cary, S.C., McDonald, I.R., Barrett, J.R., and Cowan, D.A. (2010) On the rocks: the microbiology of Antarctic Dry Valley soils. Nat Rev Microbiol 8: 129-138.
14. Cockell, C.S., and Stokes, M.D. (2004) Widespread colonization by polar hypoliths. Nature 431: 414-415.
15. Cockell, C.S., and Stokes, M.D. (2006) Hypolithic colonization of opaque rocks in the Arctic and Antarctic polar desert. Arct Antarct Alp Res 38: 335-342.
16. Cockell, C.S., Rettburg, P., Rabbow, E., and Olsson-Francis, K. (2011) Exposure of phototrophs to 548 days in low Earth orbit: microbial selection pressures in outer space and on early Earth. ISME J 5: 1671-1682.
17. Convey, P., and Stevens, M.I. (2007) Antarctic biodiversity. Science 317: 1877-1878.
18. Cowan, D.A., Khan, N., Pointing, S., and Cary, S.C. (2010) Diverse hypolithic refuge communities in Antarctic Dry Valleys. Antarct Sci 22: 714-720.
19. Cowan, D.A., Sohm, J.A., Makhalanyane, T.P., Capone, D.G., Green, T.G.A., Cary, S.C., and Tuffin, I.M. (2011a) Hypolithic communities: important nitrogen sources in Antarctic desert soils. Environ Microbiol Rep 3: 581-586.
20. Cowan, D.A., Pointing, S.B., Stevens, M.I., Cary, S.C., Stomeo, F., and Tuffin, I.M. (2011b) Distribution and abiotic influences on hypolithic communities in an Antarctic Dry Valley. Polar Biol 34: 307-311.
21. Crooks, J.A. (2002) Characterizing ecosystem-level consequences of biological invasions: the role of ecosystem engineers. Oikos 97: 153-166.
22. Daly, M.J. (2009) A new perspective on radiation resistance based on Deinococcus radiodurans. Nat Rev Microbiol 7: 237-245.
23. De Groot, A., Chapon, V., Servant, P., Christen, R., Saux, M.F.L., Sommer, S., and Heulin, T. (2005) Deinococcus deserti sp. nov., a gamma-radiation-tolerant bacterium isolated from the Sahara Desert. Int J Syst Evol Microbiol 55: 2441-2446.
24. Ferreira, A.C., Nobre, M.F., Moore, E., Rainey, F.A., Battista, J.R., and da Costa, M.S. (1999) Characterization and radiation resistance of new isolates of Rubrobacter radiotolerans and Rubrobacter xylanophilus. Extremophiles 3: 235-238.
25. Friedmann, I., and Galun, M. (1974) Desert algae, lichens and fungi. In Desert Biology Vol. II. Brown, G.W. (ed.). New York, NY, USA: Academic Press, pp. 165-212.
26. Golubic, S., Friedmann, I., and Schneider, J. (1981) The lithobiontic ecological niche, with special reference to microorganisms. J Sediment Petrol 51: 475-478.
27. Kellog, C.A., and Griffin, D.W. (2006) Aerobiology and the global transport of desert dust. Trends Ecol Evol 21: 638-644.
28. Lacap, D.C., Warren-Rhodes, K.A., McKay, C.P., and Pointing, S.B. (2011) Cyanobacteria and chloroflexi-dominated hypolithic colonization of quartz in the hyper-arid core of the Atacama Desert, Chile. Extremophiles 15: 31-38.
29. Laity, J. (2008) Deserts and Desert Environments. Chichester, UK: Wiley-Blackwell.
30. Li, Y., Cui, J., Zhang, T., Okuro, T., and Drake, S. (2009) Effectiveness of sand-fixing measures on desert land restoration in Kerqin Sandy Land, northern China. Ecol Eng 35: 118-127.
31. Liu, Y., Cockell, C.S., Wang, G., Hu, C., Chen, L., and de Phillips, R. (2008) Control of Lunar and Martian dust - experimental insights from artificial and natural cyanobacterial and algal crusts in the desert of Inner Mongolia, China. Astrobiology 8: 75-86.
32. Peel, M.C., Finlayson, B.L., and McMahon, T.A. (2007) Updated world map of the Koppen-Geiger climate classification. Hydrol Earth Syst Sci 11: 1633-1644.
33. Phillippot, L., Andersson Siv, G.E., Battin, T.J., Prosser, J.I., Schimel, J.P., Whitman, W.B., and Hallin, S. (2010) The ecological coherence of high bacterial taxonomic ranks. Nat Rev Microbiol 8: 523-529.
34. Pointing, S.B., and Belnap, J. (2012) Microbial colonization and controls in dryland systems. Nat Rev Microbiol doi: 10.1038/nrmicro2831 (in press).
35. Pointing, S.B., Warren-Rhodes, K., Lacap, D.C., Rhodes, K.L., and McKay, C.P. (2007) Hypolithic community shifts occur as a result of liquid water availability along environmental gradients in China's hot and cold hyperarid deserts. Environ Microbiol 9: 414-424.
36. Pointing, S.B., Chan, Y., Lacap, D.C., Lau, M.C.Y., Jurgens, J.A., and Farrell, R.L. (2009) Highly specialized microbial diversity in hyper-arid polar desert. Proc Natl Acad Sci USA 106: 19964-19969.
37. Rietkirk, M., Dekker, S.C., de Ruiter, P.C., and van de Koppel, J. (2004) Self-organized patchiness and catastrophic shifts in ecosystems. Science 305: 1926-1929.
38. le Roes-Hill, M., Rohland, J., Meyers, P.R., Cowan, D.A., and Burton, S.G. (2009) Streptomyces hypolithicus sp. nov., a novel streptomycete isolated from a hypolith community, Antarctica. Int J Syst Evol Microbiol 59: 2033-2036.
39. Rothrock, M.J., Jr, and Garcia-Pichel, F. (2005) Microbial diversity of benthic mats along a tidal desiccation gradient. Environ Microbiol 7: 593-601.
40. Safriel, L. (2006) Deserts and the planet - linkages between deserts and non-deserts. In Global Desert Outlook. Ezcurra, E. (ed.). Copenhagen, Denmark: Scanprint, pp. 49-72.
41. Schlesinger, W.H., Pippen, J.S., Wallenstein, M.D., Hofmockel, K.S., Klepeis, D.M., and Mahall, B.E. (2003) Community composition and photosynthesis by photoautotrophs under quartz pebbles, southern Mojave Desert. Ecology 84: 3222-3231.
42. Smith, M.C., Bowman, J.P., Scott, F.J., and Line, M.A. (2000) Sublithic bacteria associated with Antarctic quartz stones. Antarct Sci 12: 177-184.
43. Stomeo, F., Makhalanyane, T., Valverde, A., Pointing, S.B., Stevens, M.I., Cary, S.C., etal. (2012) Abiotic factors drive microbial diversity in permanently cold soil horizons of a maritime-associated Antarctic Dry Valley. FEMS Microbiol Ecol doi: 10.1111/j.1574-6941.2012.01360.x (in press).
44. Thomas, D.S.G. (1997) Arid zones: their nature and extent. In Arid Zone Geomorphology, 2nd edn. Thomas, D.S.G. (ed.). Chichester, UK: Wiley, pp. 3-12.
45. Tracy, C.R., Streten-Joyce, C., Dalton, R., Nussear, K.E., Gibb, K.S., and Christian, K.A. (2010) Microclimate and limits to photosynthesis in a diverse community of hypolithic cyanobacteria in northern Australia. Environ Microbiol 12: 592-607.
46. United Nations Environment Program (1992) World Atlas of Desertification. London, UK: Edward Arnold.
47. UN Millennium Ecosystem Assessment (2005) Ecosystems and Human Well-Being: Desertification Synthesis. Washington, DC, USA: World Resources Institute.
48. Warren-Rhodes, K., Rhodes, K.L., Pointing, S.B., Boyle, L., Dungan, J., Liu, S., etal. (2007) Lithic cyanobacterial ecology across environmental gradients and spatial scales in China's hot and cold deserts. FEMS Microbiol Ecol 61: 470-482.
49. Warren-Rhodes, K.A., Rhodes, K.L., Pointing, S.B., Ewing, S.A., Lacap, D.C., Gómez-Silva, B., etal. (2006) Hypolithic bacteria, dry limit of photosynthesis and microbial ecology in the hyperarid Atacama Desert. Microb Ecol 52: 389-398.
50. Wharton, R.A., Parker, B.C., and Simmons, G.M., Jr (1983) Distribution, species composition and morphology of algal mats in Antarctic dry valleys lakes. J Phycol 4: 355-365.
51. Wong, K.Y., Lacap, D.C., Lau, M.C., Aitchison, J.C., Cowan, D.A., and Pointing, S.B. (2010) Hypolithic colonization of quartz pavement in the high altitude tundra of central Tibet. Microb Ecol 60: 730-739.
52. Wood, S.A., Rueckert, A., Cowan, D.A., and Cary, S.C. (2008) Sources of edaphic cyanobacterial diversity in the Dry Valleys of Eastern Antarctica. ISME J 2: 308-320.
53. Wynn-Williams, D.D. (1990) Ecological aspects of Antarctic microbiology. Adv Microb Ecol 11: 71-146.