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Volumn 3, Issue 3, 2011, Pages 187-195

Recent applications of DNA sequencing technologies in food, nutrition and agriculture

Author keywords

Comparative genomics; Epigenomics; Functional genomics; Metagenomics; Resequencing; Sequencing; Structural genomics

Indexed keywords

AGRICULTURE; DIET; DNA SEQUENCE; FOOD HANDLING; FOOD INDUSTRY; HUMAN; METHODOLOGY; NUTRITIONAL SCIENCE; PATENT; REVIEW;

EID: 84865743346     PISSN: 22127984     EISSN: 18761429     Source Type: Journal    
DOI: 10.2174/2212798411103030187     Document Type: Review
Times cited : (13)

References (102)
  • 2
    • 37749031256 scopus 로고    scopus 로고
    • The year of sequencing
    • Chi KR. The year of sequencing. Nat Methods 2008;5:11-4.
    • (2008) Nat Methods , vol.5 , pp. 11-14
    • Chi, K.R.1
  • 3
    • 37749031255 scopus 로고    scopus 로고
    • Next-generation sequencing transforms today's biology
    • Schuster SC. Next-generation sequencing transforms today's biology. Nat Methods 2008;5:16-18.
    • (2008) Nat Methods , vol.5 , pp. 16-18
    • Schuster, S.C.1
  • 4
    • 67649091967 scopus 로고    scopus 로고
    • Recent patents and advances in the nextgeneration sequencing technologies
    • Lin B, Wang J, Cheng Y. Recent patents and advances in the nextgeneration sequencing technologies. Recent Pat Biomed Eng 2008;1:60-7.
    • (2008) Recent Pat Biomed Eng , vol.1 , pp. 60-67
    • Lin, B.1    Wang, J.2    Cheng, Y.3
  • 5
    • 78049442239 scopus 로고    scopus 로고
    • Applications and case studies of the next-generation sequencing technologies in food, nutrition and agriculture
    • Liu GE. Applications and case studies of the next-generation sequencing technologies in food, nutrition and agriculture. Recent Pat Food Nutr Agric 2009;1:75-9.
    • (2009) Recent Pat Food Nutr Agric , vol.1 , pp. 75-79
    • Liu, G.E.1
  • 6
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure J, Ji H. Next-generation DNA sequencing. Nat Biotechnol 2008;26:1135-45.
    • (2008) Nat Biotechnol , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 7
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generation sequencing technology on genetics
    • Mardis ER. The impact of next-generation sequencing technology on genetics. Trends Genet 2008, 24:133-41.
    • (2008) Trends Genet , vol.24 , pp. 133-141
    • Mardis, E.R.1
  • 8
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies - The next generation
    • Metzker ML. Sequencing technologies - the next generation. Nat Rev Genet 2010;11:31-46.
    • (2010) Nat Rev Genet , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 10
    • 79951475133 scopus 로고    scopus 로고
    • A decade's perspective on DNA sequencing technology
    • Mardis ER. A decade's perspective on DNA sequencing technology. Nature 2011;470:198-203.
    • (2011) Nature , vol.470 , pp. 198-203
    • Mardis, E.R.1
  • 15
    • 46449103738 scopus 로고    scopus 로고
    • A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
    • Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, et al. A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning. Genome Res 2008, 18:1051-63.
    • (2008) Genome Res , vol.18 , pp. 1051-1063
    • Valouev, A.1    Ichikawa, J.2    Tonthat, T.3    Stuart, J.4    Ranade, S.5    Peckham, H.6
  • 20
    • 58149234737 scopus 로고    scopus 로고
    • Real-time DNA sequencing from single polymerase molecules
    • Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G, et al. Real-time DNA sequencing from single polymerase molecules. Science 2009;323:133-8.
    • (2009) Science , vol.323 , pp. 133-138
    • Eid, J.1    Fehr, A.2    Gray, J.3    Luong, K.4    Lyle, J.5    Otto, G.6
  • 22
  • 25
    • 79960597679 scopus 로고    scopus 로고
    • An integrated semiconductor device enabling non-optical genome sequencing
    • Rothberg JM, Hinz W, Rearick TM, Schultz J, Mileski W, Davey M et al. An integrated semiconductor device enabling non-optical genome sequencing. Nature 2011;475:348-52.
    • (2011) Nature , vol.475 , pp. 348-352
    • Rothberg, J.M.1    Hinz, W.2    Rearick, T.M.3    Schultz, J.4    Mileski, W.5    Davey, M.6
  • 26
    • 39649084637 scopus 로고    scopus 로고
    • Bioinformatics challenges of new sequencing technology
    • Pop M, Salzberg SL. Bioinformatics challenges of new sequencing technology. Trends Genet 2008;24:142-9.
    • (2008) Trends Genet , vol.24 , pp. 142-149
    • Pop, M.1    Salzberg, S.L.2
  • 27
    • 70449701942 scopus 로고    scopus 로고
    • Sense from sequence reads: Methods for alignment and assembly
    • Flicek P, Birney E. Sense from sequence reads: methods for alignment and assembly. Nat Methods 2009;6:S6-S12.
    • (2009) Nat Methods , vol.6
    • Flicek, P.1    Birney, E.2
  • 28
    • 75149155568 scopus 로고    scopus 로고
    • The sequence and de novo assembly of the giant panda genome
    • Li R, Fan W, Tian G, Zhu H, He L, Cai J, et al. The sequence and de novo assembly of the giant panda genome. Nature 2010;463:311-7.
    • (2010) Nature , vol.463 , pp. 311-317
    • Li, R.1    Fan, W.2    Tian, G.3    Zhu, H.4    He, L.5    Cai, J.6
  • 29
    • 77957903598 scopus 로고    scopus 로고
    • Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): Genome assembly and analysis
    • Dalloul RA, Long JA, Zimin AV, Aslam L, Beal K, Blomberg LA, et al. Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis. PLoS Biol 2010;8.
    • (2010) PLoS Biol , pp. 8
    • Dalloul, R.A.1    Long, J.A.2    Zimin, A.V.3    Aslam, L.4    Beal, K.5    Blomberg, L.A.6
  • 31
    • 79960609901 scopus 로고    scopus 로고
    • Prospective genomic characterization of the german Enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology
    • Mellmann A, Harmsen D, Cummings CA, Zentz EB, Leopold SR, Rico A, et al. Prospective genomic characterization of the german Enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology. PLoS One 2011;6:e22751.
    • (2011) PLoS One , vol.6
    • Mellmann, A.1    Harmsen, D.2    Cummings, C.A.3    Zentz, E.B.4    Leopold, S.R.5    Rico, A.6
  • 32
    • 77949463821 scopus 로고    scopus 로고
    • High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak
    • Gilmour MW, Graham M, Van Domselaar G, Tyler S, Kent H, Trout-Yakel KM, et al. High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak. BMC Genomics 2010;11:120.
    • (2010) BMC Genomics , vol.11 , pp. 120
    • Gilmour, M.W.1    Graham, M.2    Van Domselaar, G.3    Tyler, S.4    Kent, H.5    Trout-Yakel, K.M.6
  • 33
    • 34547643929 scopus 로고    scopus 로고
    • Characterization of mutation spectra with ultra-deep pyrosequencing: Application to HIV-1 drug resistance
    • Wang C, Mitsuya Y, Gharizadeh B, Ronaghi M, Shafer RW. Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistance. Genome Res 2007;17:1195-201.
    • (2007) Genome Res , vol.17 , pp. 1195-1201
    • Wang, C.1    Mitsuya, Y.2    Gharizadeh, B.3    Ronaghi, M.4    Shafer, R.W.5
  • 35
    • 43149106205 scopus 로고    scopus 로고
    • Rapid comparative genomic analysis for clinical microbiology: The Francisella tularensis paradigm
    • La Scola B, Elkarkouri K, Li W, Wahab T, Fournous G, Rolain JM, et al. Rapid comparative genomic analysis for clinical microbiology: the Francisella tularensis paradigm. Genome Res 2008;18:742-50.
    • (2008) Genome Res , vol.18 , pp. 742-750
    • La Scola, B.1    Elkarkouri, K.2    Li, W.3    Wahab, T.4    Fournous, G.5    Rolain, J.M.6
  • 38
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14, 000 cases of seven common diseases and 3, 000 shared controls
    • Wellcome Trust Case Control Consortium
    • Wellcome Trust Case Control Consortium. Genome-wide association study of 14, 000 cases of seven common diseases and 3, 000 shared controls. Nature 2007;447:661-78.
    • (2007) Nature , vol.447 , pp. 661-678
  • 39
    • 48349136889 scopus 로고    scopus 로고
    • Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease
    • Barrett JC, Hansoul S, Nicolae DL, Cho JH, Duerr RH, Rioux JD, et al. Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease. Nat Genet 2008;40:955-62.
    • (2008) Nat Genet , vol.40 , pp. 955-962
    • Barrett, J.C.1    Hansoul, S.2    Nicolae, D.L.3    Cho, J.H.4    Duerr, R.H.5    Rioux, J.D.6
  • 40
    • 69949144370 scopus 로고    scopus 로고
    • A whole genome association analysis identifies loci associated with Mycobacterium avium subsp. paratuberculosis infection status in US holstein cattle
    • Settles M, Zanella R, McKay SD, Schnabel RD, Taylor JF, Whitlock R, et al. A whole genome association analysis identifies loci associated with Mycobacterium avium subsp. paratuberculosis infection status in US holstein cattle. Anim Genet 2009;40:655-62.
    • (2009) Anim Genet , vol.40 , pp. 655-662
    • Settles, M.1    Zanella, R.2    McKay, S.D.3    Schnabel, R.D.4    Taylor, J.F.5    Whitlock, R.6
  • 41
  • 43
    • 48349124258 scopus 로고    scopus 로고
    • High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi
    • Holt KE, Parkhill J, Mazzoni CJ, Roumagnac P, Weill FX, Goodhead I, et al. High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi. Nat Genet 2008;40:987-93.
    • (2008) Nat Genet , vol.40 , pp. 987-993
    • Holt, K.E.1    Parkhill, J.2    Mazzoni, C.J.3    Roumagnac, P.4    Weill, F.X.5    Goodhead, I.6
  • 44
    • 73249140740 scopus 로고    scopus 로고
    • Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype
    • Kingsley RA, Msefula CL, Thomson NR, Kariuki S, Holt KE, Gordon MA et al. Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype. Genome Res 2009;19:2279-87.
    • (2009) Genome Res , vol.19 , pp. 2279-2287
    • Kingsley, R.A.1    Msefula, C.L.2    Thomson, N.R.3    Kariuki, S.4    Holt, K.E.5    Gordon, M.A.6
  • 45
    • 50849126804 scopus 로고    scopus 로고
    • High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies
    • Srivatsan A, Han Y, Peng J, Tehranchi AK, Gibbs R, Wang JD, et al. High-precision, whole-genome sequencing of laboratory strains facilitates genetic studies. PLoS Genet 2008;4:e1000139.
    • (2008) PLoS Genet , vol.4
    • Srivatsan, A.1    Han, Y.2    Peng, J.3    Tehranchi, A.K.4    Gibbs, R.5    Wang, J.D.6
  • 46
    • 50649089207 scopus 로고    scopus 로고
    • RNAseq: An assessment of technical reproducibility and comparison with gene expression arrays
    • Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y. RNAseq: an assessment of technical reproducibility and comparison with gene expression arrays. Genome Res 2008;18:1509-17.
    • (2008) Genome Res , vol.18 , pp. 1509-1517
    • Marioni, J.C.1    Mason, C.E.2    Mane, S.M.3    Stephens, M.4    Gilad, Y.5
  • 48
    • 37749047490 scopus 로고    scopus 로고
    • Sequence census methods for functional genomics
    • Wold B, Myers RM. Sequence census methods for functional genomics. Nat Methods 2008;5:19-21.
    • (2008) Nat Methods , vol.5 , pp. 19-21
    • Wold, B.1    Myers, R.M.2
  • 49
    • 45549088326 scopus 로고    scopus 로고
    • The transcriptional landscape of the yeast genome defined by RNA sequencing
    • Nagalakshmi U, Wang Z, Waern K, Shou C, Raha D, Gerstein M, et al. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 2008;320:1344-9.
    • (2008) Science , vol.320 , pp. 1344-1349
    • Nagalakshmi, U.1    Wang, Z.2    Waern, K.3    Shou, C.4    Raha, D.5    Gerstein, M.6
  • 53
    • 77957991364 scopus 로고    scopus 로고
    • An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation
    • Harhay GP, Smith TP, Alexander LJ, Haudenschild CD, Keele JW, Matukumalli LK, et al. An atlas of bovine gene expression reveals novel distinctive tissue characteristics and evidence for improving genome annotation. Genome Biol 2010;11:R102.
    • (2010) Genome Biol , vol.11
    • Harhay, G.P.1    Smith, T.P.2    Alexander, L.J.3    Haudenschild, C.D.4    Keele, J.W.5    Matukumalli, L.K.6
  • 54
    • 75149149874 scopus 로고    scopus 로고
    • Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs
    • Oliver HF, Orsi RH, Ponnala L, Keich U, Wang W, Sun Q, et al. Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs. BMC Genomics 2009, 10:641.
    • (2009) BMC Genomics , vol.10 , pp. 641
    • Oliver, H.F.1    Orsi, R.H.2    Ponnala, L.3    Keich, U.4    Wang, W.5    Sun, Q.6
  • 58
    • 33845436047 scopus 로고    scopus 로고
    • Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    • Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, et al. Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans. Cell 2006;127:1193-207.
    • (2006) Cell , vol.127 , pp. 1193-1207
    • Ruby, J.G.1    Jan, C.2    Player, C.3    Axtell, M.J.4    Lee, W.5    Nusbaum, C.6
  • 60
    • 34347355440 scopus 로고    scopus 로고
    • MiRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
    • Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC. miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature 2007;447:1126-9.
    • (2007) Nature , vol.447 , pp. 1126-1129
    • Molnar, A.1    Schwach, F.2    Studholme, D.J.3    Thuenemann, E.C.4    Baulcombe, D.C.5
  • 61
    • 34250159524 scopus 로고    scopus 로고
    • Genome-wide mapping of in vivo protein-DNA interactions
    • Johnson DS, Mortazavi A, Myers RM, Wold B. Genome-wide mapping of in vivo protein-DNA interactions. Science 2007;316:1497-502.
    • (2007) Science , vol.316 , pp. 1497-1502
    • Johnson, D.S.1    Mortazavi, A.2    Myers, R.M.3    Wold, B.4
  • 62
    • 34547633677 scopus 로고    scopus 로고
    • Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing
    • Robertson G, Hirst M, Bainbridge M, Bilenky M, Zhao Y, Zeng T, et al. Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing. Nat Methods 2007;4:651-7.
    • (2007) Nat Methods , vol.4 , pp. 651-657
    • Robertson, G.1    Hirst, M.2    Bainbridge, M.3    Bilenky, M.4    Zhao, Y.5    Zeng, T.6
  • 63
    • 34250332235 scopus 로고    scopus 로고
    • Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array-and sequencingbased technologies
    • Euskirchen GM, Rozowsky JS, Wei CL, Lee WH, Zhang ZD, Hartman S, et al. Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array-and sequencingbased technologies. Genome Res 2007;17:898-909.
    • (2007) Genome Res , vol.17 , pp. 898-909
    • Euskirchen, G.M.1    Rozowsky, J.S.2    Wei, C.L.3    Lee, W.H.4    Zhang, Z.D.5    Hartman, S.6
  • 64
    • 39449088572 scopus 로고    scopus 로고
    • Genome-wide approaches to studying chromatin modifications
    • Schones DE, Zhao K. Genome-wide approaches to studying chromatin modifications. Nat Rev Genet 2008;9:179-91.
    • (2008) Nat Rev Genet , vol.9 , pp. 179-191
    • Schones, D.E.1    Zhao, K.2
  • 65
    • 34548734299 scopus 로고    scopus 로고
    • Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing
    • Taylor KH, Kramer RS, Davis JW, Guo J, Duff DJ, Xu D, et al. Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing. Cancer Res 2007, 67:8511-8.
    • (2007) Cancer Res , vol.67 , pp. 8511-8518
    • Taylor, K.H.1    Kramer, R.S.2    Davis, J.W.3    Guo, J.4    Duff, D.J.5    Xu, D.6
  • 66
    • 40749109894 scopus 로고    scopus 로고
    • Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
    • Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, et al. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 2008;452:215-19.
    • (2008) Nature , vol.452 , pp. 215-219
    • Cokus, S.J.1    Feng, S.2    Zhang, X.3    Chen, Z.4    Merriman, B.5    Haudenschild, C.D.6
  • 68
    • 34249026300 scopus 로고    scopus 로고
    • High-resolution profiling of histone methylations in the human genome
    • Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, et al. High-resolution profiling of histone methylations in the human genome. Cell 2007;129:823-37.
    • (2007) Cell , vol.129 , pp. 823-837
    • Barski, A.1    Cuddapah, S.2    Cui, K.3    Roh, T.Y.4    Schones, D.E.5    Wang, Z.6
  • 69
    • 34547624303 scopus 로고    scopus 로고
    • Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
    • Mikkelsen TS, Ku M, Jaffe DB, Issac B, Lieberman E, Giannoukos G, et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. Nature 2007;448:553-60.
    • (2007) Nature , vol.448 , pp. 553-560
    • Mikkelsen, T.S.1    Ku, M.2    Jaffe, D.B.3    Issac, B.4    Lieberman, E.5    Giannoukos, G.6
  • 70
    • 50249173875 scopus 로고    scopus 로고
    • Epigenetic regulation of genomes: Nutrient-specific modulation of genetic networks in bovine cells
    • Li CJ, Elsasser TH, Li RW. Epigenetic regulation of genomes: nutrient-specific modulation of genetic networks in bovine cells. Dev Biol (Basel) 2008;132:391-8.
    • (2008) Dev Biol (Basel) , vol.132 , pp. 391-398
    • Li, C.J.1    Elsasser, T.H.2    Li, R.W.3
  • 71
    • 55449131166 scopus 로고    scopus 로고
    • Bioinformatics for whole-genome shotgun sequencing of microbial communities
    • Chen K, Pachter L. Bioinformatics for whole-genome shotgun sequencing of microbial communities. PLoS Comput Biol 2005;1:106-12.
    • (2005) PLoS Comput Biol , vol.1 , pp. 106-112
    • Chen, K.1    Pachter, L.2
  • 72
    • 3042575139 scopus 로고    scopus 로고
    • More than meets the eye
    • Nee, S. More than meets the eye. Nature 2004;429:804-5.
    • (2004) Nature , vol.429 , pp. 804-805
    • Nee, S.1
  • 73
    • 0031662188 scopus 로고    scopus 로고
    • Impact of cultureindependent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz P, Goebel BM, Pace NR. Impact of cultureindependent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 1998;180:4765-74.
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 74
    • 79952005915 scopus 로고    scopus 로고
    • Microbes and health sackler colloquium: Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
    • Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, et al. Microbes and health sackler colloquium: Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. Proc Natl Acad Sci U S A 2011;108 Suppl 1:4516-22.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.SUPPL. 1 , pp. 4516-4522
    • Caporaso, J.G.1    Lauber, C.L.2    Walters, W.A.3    Berg-Lyons, D.4    Lozupone, C.A.5    Turnbaugh, P.J.6
  • 78
    • 78449296237 scopus 로고    scopus 로고
    • Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors
    • Benson AK, Kelly SA, Legge R, Ma F, Low SJ, Kim J, et al. Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors. Proc Natl Acad Sci U S A 2010;107:18933-8.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 18933-18938
    • Benson, A.K.1    Kelly, S.A.2    Legge, R.3    Ma, F.4    Low, S.J.5    Kim, J.6
  • 79
    • 73449146256 scopus 로고    scopus 로고
    • Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing
    • Roh SW, Kim KH, Nam YD, Chang HW, Park EJ, Bae JW. Investigation of archaeal and bacterial diversity in fermented seafood using barcoded pyrosequencing. ISME J 2010;4:1-16.
    • (2010) ISME J , vol.4 , pp. 1-16
    • Roh, S.W.1    Kim, K.H.2    Nam, Y.D.3    Chang, H.W.4    Park, E.J.5    Bae, J.W.6
  • 82
    • 33845901507 scopus 로고    scopus 로고
    • Microbial ecology: Human gut microbes associated with obesity
    • Ley RE, Turnbaugh PJ, Klein S, Gordon JI. Microbial ecology: human gut microbes associated with obesity. Nature 2006, 444:1022-1023.
    • (2006) Nature , vol.444 , pp. 1022-1023
    • Ley, R.E.1    Turnbaugh, P.J.2    Klein, S.3    Gordon, J.I.4
  • 85
    • 49549107771 scopus 로고    scopus 로고
    • Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)
    • Dowd SE, Callaway TR, Wolcott RD, Sun Y, McKeehan T, Hagevoort RG, et al. Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP). BMC Microbiol 2008;8:125.
    • (2008) BMC Microbiol , vol.8 , pp. 125
    • Dowd, S.E.1    Callaway, T.R.2    Wolcott, R.D.3    Sun, Y.4    McKeehan, T.5    Hagevoort, R.G.6
  • 86
    • 49949095159 scopus 로고    scopus 로고
    • Bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP) for microbiome studies: Bacterial diversity in the ileum of newly weaned Salmonella-infected pigs
    • Dowd SE, Sun Y, Wolcott RD, Domingo A, Carroll JA. Bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP) for microbiome studies: bacterial diversity in the ileum of newly weaned Salmonella-infected pigs. Foodborne Pathog Dis 2008;5:459-72.
    • (2008) Foodborne Pathog Dis , vol.5 , pp. 459-472
    • Dowd, S.E.1    Sun, Y.2    Wolcott, R.D.3    Domingo, A.4    Carroll, J.A.5
  • 87
    • 63249131326 scopus 로고    scopus 로고
    • Evaluation of the bacterial diversity in cecal contents of laying hens fed various molting diets by using bacterial tag-encoded FLX amplicon pyrosequencing
    • Callaway TR, Dowd SE, Wolcott RD, Sun Y, McReynolds JL, Edrington TS, et al. Evaluation of the bacterial diversity in cecal contents of laying hens fed various molting diets by using bacterial tag-encoded FLX amplicon pyrosequencing. Poult Sci 2009;88:298-302.
    • (2009) Poult Sci , vol.88 , pp. 298-302
    • Callaway, T.R.1    Dowd, S.E.2    Wolcott, R.D.3    Sun, Y.4    McReynolds, J.L.5    Edrington, T.S.6
  • 88
    • 67649854667 scopus 로고    scopus 로고
    • Universal DNA-based methods for assessing the diet of grazing livestock and wildlife from feces
    • Pegard A, Miquel C, Valentini A, Coissac E, Bouvier F, Francois D, et al. Universal DNA-based methods for assessing the diet of grazing livestock and wildlife from feces. J Agric Food Chem 2009;57:5700-06.
    • (2009) J Agric Food Chem , vol.57 , pp. 5700-5706
    • Pegard, A.1    Miquel, C.2    Valentini, A.3    Coissac, E.4    Bouvier, F.5    Francois, D.6
  • 89
    • 78751581865 scopus 로고    scopus 로고
    • Analysis of human and animal fecal microbiota for microbial source tracking
    • Lee JE, Lee S, Sung J, Ko G. Analysis of human and animal fecal microbiota for microbial source tracking. ISME J 2011;52:362-5.
    • (2011) ISME J , vol.52 , pp. 362-365
    • Lee, J.E.1    Lee, S.2    Sung, J.3    Ko, G.4
  • 90
    • 77956993764 scopus 로고    scopus 로고
    • Phylogenetic diversity and community structure of anaerobic gut fungi (phylum Neocallimastigomycota) in ruminant and non-ruminant herbivores
    • Liggenstoffer AS, Youssef NH, Couger MB, Elshahed MS. Phylogenetic diversity and community structure of anaerobic gut fungi (phylum Neocallimastigomycota) in ruminant and non-ruminant herbivores. ISME J 2010;4:1225-35.
    • (2010) ISME J , vol.4 , pp. 1225-1235
    • Liggenstoffer, A.S.1    Youssef, N.H.2    Couger, M.B.3    Elshahed, M.S.4
  • 91
    • 67649690518 scopus 로고    scopus 로고
    • Phylogenetic classification of Escherichia coli O157:H7 strains of human and bovine origin using a novel set of nucleotide polymorphisms
    • Clawson ML, Keen JE, Smith TP, Durso LM, McDaneld TG, Mandrell RE, et al. Phylogenetic classification of Escherichia coli O157:H7 strains of human and bovine origin using a novel set of nucleotide polymorphisms. Genome Biol 2009;10:R56.
    • (2009) Genome Biol , vol.10
    • Clawson, M.L.1    Keen, J.E.2    Smith, T.P.3    Durso, L.M.4    McDaneld, T.G.5    Mandrell, R.E.6
  • 97
    • 44849092474 scopus 로고    scopus 로고
    • The new paradigm of flow cell sequencing
    • Holt RA, Jones SJ. The new paradigm of flow cell sequencing. Genome Res 2008;18:839-46.
    • (2008) Genome Res , vol.18 , pp. 839-846
    • Holt, R.A.1    Jones, S.J.2
  • 98
    • 37749025169 scopus 로고    scopus 로고
    • Primer. Sequencing-the next generation
    • Rusk N, Kiermer V. Primer. Sequencing-the next generation. Nat Methods 2008;5:15.
    • (2008) Nat Methods , vol.5 , pp. 15
    • Rusk, N.1    Kiermer, V.2
  • 99
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • 1000 Genomes Project Consortium
    • The 1000 Genomes Project Consortium. A map of human genome variation from population-scale sequencing. Nature 2010;467:1061-73.
    • (2010) Nature , vol.467 , pp. 1061-1073
  • 101
    • 79951481957 scopus 로고    scopus 로고
    • Initial impact of the sequencing of the human genome
    • Lander ES. Initial impact of the sequencing of the human genome. Nature 2011;470:187-97.
    • (2011) Nature , vol.470 , pp. 187-197
    • Lander, E.S.1


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