-
1
-
-
0035478585
-
Macromolecular crowding: Obvious but underappreciated
-
R.J. Ellis Macromolecular crowding: obvious but underappreciated Trends Biochem. Sci. 26 2001 597 604
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 597-604
-
-
Ellis, R.J.1
-
2
-
-
0027318513
-
Macromolecular crowding: Biochemical, biophysical, and physiological consequences
-
S.B. Zimmerman, and A.P. Minton Macromolecular crowding: biochemical, biophysical, and physiological consequences Annu. Rev. Biophys. Biomol. Struct. 22 1993 27 65
-
(1993)
Annu. Rev. Biophys. Biomol. Struct.
, vol.22
, pp. 27-65
-
-
Zimmerman, S.B.1
Minton, A.P.2
-
3
-
-
0036468995
-
Kinetic studies of protein-protein interactions
-
G. Schreiber Kinetic studies of protein-protein interactions Curr. Opin. Struct. Biol. 12 2002 41 47
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 41-47
-
-
Schreiber, G.1
-
4
-
-
65249099497
-
Fundamental aspects of protein-protein association kinetics
-
G. Schreiber, G. Haran, and H.X. Zhou Fundamental aspects of protein-protein association kinetics Chem. Rev. 109 2009 839 860
-
(2009)
Chem. Rev.
, vol.109
, pp. 839-860
-
-
Schreiber, G.1
Haran, G.2
Zhou, H.X.3
-
5
-
-
33751086423
-
Visualization of transient encounter complexes in protein-protein association
-
C. Tang, J. Iwahara, and G.M. Clore Visualization of transient encounter complexes in protein-protein association Nature 444 2006 383 386
-
(2006)
Nature
, vol.444
, pp. 383-386
-
-
Tang, C.1
Iwahara, J.2
Clore, G.M.3
-
6
-
-
62849090890
-
The courtship of proteins: Understanding the encounter complex
-
M. Ubbink The courtship of proteins: understanding the encounter complex FEBS Lett. 583 2009 1060 1066
-
(2009)
FEBS Lett.
, vol.583
, pp. 1060-1066
-
-
Ubbink, M.1
-
7
-
-
77955787224
-
Shifting the equilibrium between the encounter state and the specific form of a protein complex by interfacial point mutations
-
A.N. Volkov, and Q. Bashir M. Ubbink Shifting the equilibrium between the encounter state and the specific form of a protein complex by interfacial point mutations J. Am. Chem. Soc. 132 2010 11487 11495
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 11487-11495
-
-
Volkov, A.N.1
Bashir, Q.2
Ubbink, M.3
-
8
-
-
34447101383
-
On the dynamic nature of the transition state for protein-protein association as determined by double-mutant cycle analysis and simulation
-
M. Harel, M. Cohen, and G. Schreiber On the dynamic nature of the transition state for protein-protein association as determined by double-mutant cycle analysis and simulation J. Mol. Biol. 371 2007 180 196
-
(2007)
J. Mol. Biol.
, vol.371
, pp. 180-196
-
-
Harel, M.1
Cohen, M.2
Schreiber, G.3
-
9
-
-
68049142311
-
Fruitful and futile encounters along the association reaction between proteins
-
M. Harel, A. Spaar, and G. Schreiber Fruitful and futile encounters along the association reaction between proteins Biophys. J. 96 2009 4237 4248
-
(2009)
Biophys. J.
, vol.96
, pp. 4237-4248
-
-
Harel, M.1
Spaar, A.2
Schreiber, G.3
-
10
-
-
36849126695
-
Scaled particle theory of fluid mixtures
-
J.L. Lebowitz Scaled particle theory of fluid mixtures J. Chem. Phys. 43 1965 774 779
-
(1965)
J. Chem. Phys.
, vol.43
, pp. 774-779
-
-
Lebowitz, J.L.1
-
11
-
-
0002792629
-
The scaled particle theory for particles of arbitrary shape
-
R.M. Gibbons The scaled particle theory for particles of arbitrary shape Mol. Phys. 17 1969 81 86
-
(1969)
Mol. Phys.
, vol.17
, pp. 81-86
-
-
Gibbons, R.M.1
-
12
-
-
0020668187
-
The effect of volume occupancy upon the thermodynamic activity of proteins: Some biochemical consequences
-
A.P. Minton The effect of volume occupancy upon the thermodynamic activity of proteins: some biochemical consequences Mol. Cell. Biochem. 55 1983 119 140
-
(1983)
Mol. Cell. Biochem.
, vol.55
, pp. 119-140
-
-
Minton, A.P.1
-
13
-
-
0001123138
-
Effects of "crowding" in protein solutions
-
G.B. Ralston Effects of "crowding" in protein solutions J. Chem. Educ. 67 1990 857 860
-
(1990)
J. Chem. Educ.
, vol.67
, pp. 857-860
-
-
Ralston, G.B.1
-
14
-
-
0035253217
-
Macromolecular crowding: An important but neglected aspect of the intracellular environment
-
R.J. Ellis Macromolecular crowding: an important but neglected aspect of the intracellular environment Curr. Opin. Struct. Biol. 11 2001 114 119
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 114-119
-
-
Ellis, R.J.1
-
15
-
-
0025608495
-
The influence of macromolecular crowding on thermodynamic activity: Solubility and dimerization constants for spherical and dumbbell-shaped molecules in a hard-sphere mixture
-
O.G. Berg The influence of macromolecular crowding on thermodynamic activity: solubility and dimerization constants for spherical and dumbbell-shaped molecules in a hard-sphere mixture Biopolymers 30 1990 1027 1037
-
(1990)
Biopolymers
, vol.30
, pp. 1027-1037
-
-
Berg, O.G.1
-
16
-
-
41049090929
-
Macromolecular crowding and confinement: Biochemical, biophysical, and potential physiological consequences
-
H.X. Zhou, G. Rivas, and A.P. Minton Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences Annu. Rev. Biophys 37 2008 375 397
-
(2008)
Annu. Rev. Biophys
, vol.37
, pp. 375-397
-
-
Zhou, H.X.1
Rivas, G.2
Minton, A.P.3
-
17
-
-
25444487734
-
Influence of macromolecular crowding upon the stability and state of association of proteins: Predictions and observations
-
A.P. Minton Influence of macromolecular crowding upon the stability and state of association of proteins: predictions and observations J. Pharm. Sci. 94 2005 1668 1675
-
(2005)
J. Pharm. Sci.
, vol.94
, pp. 1668-1675
-
-
Minton, A.P.1
-
18
-
-
33645999511
-
On interaction between two bodies immersed in a solution of macromolecules
-
S. Asakura, and F. Oosawa On interaction between two bodies immersed in a solution of macromolecules J. Chem. Phys. 22 1954 1255 1256
-
(1954)
J. Chem. Phys.
, vol.22
, pp. 1255-1256
-
-
Asakura, S.1
Oosawa, F.2
-
19
-
-
84942297559
-
Polymers at interfaces and the interactions in colloidal dispersions
-
A. Vrij Polymers at interfaces and the interactions in colloidal dispersions Pure Appl. Chem. 48 1976 471 483
-
(1976)
Pure Appl. Chem.
, vol.48
, pp. 471-483
-
-
Vrij, A.1
-
20
-
-
4544278751
-
Protein folding and binding in confined spaces and in crowded solutions
-
H.X. Zhou Protein folding and binding in confined spaces and in crowded solutions J. Mol. Recognit. 17 2004 368 375
-
(2004)
J. Mol. Recognit.
, vol.17
, pp. 368-375
-
-
Zhou, H.X.1
-
21
-
-
78649876151
-
Crowding and hydrodynamic interactions likely dominate in vivo macromolecular motion
-
T. Ando, and J. Skolnick Crowding and hydrodynamic interactions likely dominate in vivo macromolecular motion Proc. Natl. Acad. Sci. USA 107 2010 18457 18462
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 18457-18462
-
-
Ando, T.1
Skolnick, J.2
-
22
-
-
62649161932
-
Effect of macromolecular crowding on reaction rates: A computational and theoretical study
-
J.S. Kim, and A. Yethiraj Effect of macromolecular crowding on reaction rates: a computational and theoretical study Biophys. J. 96 2009 1333 1340
-
(2009)
Biophys. J.
, vol.96
, pp. 1333-1340
-
-
Kim, J.S.1
Yethiraj, A.2
-
23
-
-
0032921819
-
Upper limit of the time scale for diffusion and chain collapse in chymotrypsin inhibitor 2
-
A.G. Ladurner, and A.R. Fersht Upper limit of the time scale for diffusion and chain collapse in chymotrypsin inhibitor 2 Nat. Struct. Biol. 6 1999 28 31
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 28-31
-
-
Ladurner, A.G.1
Fersht, A.R.2
-
24
-
-
0842268058
-
Effect of crowding on protein-protein association rates: Fundamental differences between low and high mass crowding agents. j
-
N. Kozer, and G. Schreiber Effect of crowding on protein-protein association rates: fundamental differences between low and high mass crowding agents. j Mol. Biol. 336 2004 763 774
-
(2004)
Mol. Biol.
, vol.336
, pp. 763-774
-
-
Kozer, N.1
Schreiber, G.2
-
25
-
-
17644385876
-
Implications of the effects of viscosity, macromolecular crowding, and temperature for the transient interaction between cytochrome f and plastocyanin from the cyanobacterium Phormidium laminosum
-
B.G. Schlarb-Ridley, and H. Mi D.S. Bendall Implications of the effects of viscosity, macromolecular crowding, and temperature for the transient interaction between cytochrome f and plastocyanin from the cyanobacterium Phormidium laminosum Biochemistry 44 2005 6232 6238
-
(2005)
Biochemistry
, vol.44
, pp. 6232-6238
-
-
Schlarb-Ridley, B.G.1
Mi, H.2
Bendall, D.S.3
-
26
-
-
40549134985
-
Electrostatic rate enhancement and transient complex of protein-protein association
-
R. Alsallaq, and H.X. Zhou Electrostatic rate enhancement and transient complex of protein-protein association Proteins 71 2008 320 335
-
(2008)
Proteins
, vol.71
, pp. 320-335
-
-
Alsallaq, R.1
Zhou, H.X.2
-
27
-
-
0033524394
-
Biophysical characterization of the interaction of the beta-lactamase TEM-1 with its protein inhibitor BLIP
-
S. Albeck, and G. Schreiber Biophysical characterization of the interaction of the beta-lactamase TEM-1 with its protein inhibitor BLIP Biochemistry 38 1999 11 21
-
(1999)
Biochemistry
, vol.38
, pp. 11-21
-
-
Albeck, S.1
Schreiber, G.2
-
29
-
-
0016749447
-
Determination of dissociation constants and specific rate constants of enzyme-substrate (or protein-ligand) interactions from rapid reaction kinetic data
-
S. Strickland, G. Palmer, and V. Massey Determination of dissociation constants and specific rate constants of enzyme-substrate (or protein-ligand) interactions from rapid reaction kinetic data J. Biol. Chem. 250 1975 4048 4052
-
(1975)
J. Biol. Chem.
, vol.250
, pp. 4048-4052
-
-
Strickland, S.1
Palmer, G.2
Massey, V.3
-
30
-
-
0023645205
-
Non-additivity in protein-protein interactions
-
A. Horovitz Non-additivity in protein-protein interactions J. Mol. Biol. 196 1987 733 735
-
(1987)
J. Mol. Biol.
, vol.196
, pp. 733-735
-
-
Horovitz, A.1
-
31
-
-
0029056922
-
Energetics of protein-protein interactions: Analysis of the barnase-barstar interface by single mutations and double mutant cycles
-
G. Schreiber, and A.R. Fersht Energetics of protein-protein interactions: analysis of the barnase-barstar interface by single mutations and double mutant cycles J. Mol. Biol. 248 1995 478 486
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 478-486
-
-
Schreiber, G.1
Fersht, A.R.2
-
32
-
-
77957117205
-
Rate theories for biologists
-
H.X. Zhou Rate theories for biologists Q. Rev. Biophys. 43 2010 219 293
-
(2010)
Q. Rev. Biophys.
, vol.43
, pp. 219-293
-
-
Zhou, H.X.1
-
33
-
-
82955239904
-
Automated prediction of protein association rate constants
-
S. Qin, X. Pang, and H.X. Zhou Automated prediction of protein association rate constants Structure 19 2011 1744 1751
-
(2011)
Structure
, vol.19
, pp. 1744-1751
-
-
Qin, S.1
Pang, X.2
Zhou, H.X.3
-
34
-
-
70350031051
-
Scaling form of viscosity at all length-scales in poly(ethylene glycol) solutions studied by fluorescence correlation spectroscopy and capillary electrophoresis
-
R. Holyst, and A. Bielejewska S.A. Wieczorek Scaling form of viscosity at all length-scales in poly(ethylene glycol) solutions studied by fluorescence correlation spectroscopy and capillary electrophoresis Phys. Chem. Chem. Phys. 11 2009 9025 9032
-
(2009)
Phys. Chem. Chem. Phys.
, vol.11
, pp. 9025-9032
-
-
Holyst, R.1
Bielejewska, A.2
Wieczorek, S.A.3
-
35
-
-
58149341606
-
Macromolecular crowding and size effects on probe microviscosity
-
A.B. Goins, H. Sanabria, and M.N. Waxham Macromolecular crowding and size effects on probe microviscosity Biophys. J. 95 2008 5362 5373
-
(2008)
Biophys. J.
, vol.95
, pp. 5362-5373
-
-
Goins, A.B.1
Sanabria, H.2
Waxham, M.N.3
-
36
-
-
68949110044
-
Atomistic modeling of macromolecular crowding predicts modest increases in protein folding and binding stability
-
S. Qin, and H.X. Zhou Atomistic modeling of macromolecular crowding predicts modest increases in protein folding and binding stability Biophys. J. 97 2009 12 19
-
(2009)
Biophys. J.
, vol.97
, pp. 12-19
-
-
Qin, S.1
Zhou, H.X.2
-
37
-
-
43649102320
-
Free energy of sickle hemoglobin polymerization: A scaled-particle treatment for use with dextran as a crowding agent
-
Z. Liu, and W. Weng F.A. Ferrone Free energy of sickle hemoglobin polymerization: a scaled-particle treatment for use with dextran as a crowding agent Biophys. J. 94 2008 3629 3634
-
(2008)
Biophys. J.
, vol.94
, pp. 3629-3634
-
-
Liu, Z.1
Weng, W.2
Ferrone, F.A.3
-
38
-
-
70349310244
-
Nonadditive effects of mixed crowding on protein stability
-
J. Batra, K. Xu, and H.X. Zhou Nonadditive effects of mixed crowding on protein stability Proteins 77 2009 133 138
-
(2009)
Proteins
, vol.77
, pp. 133-138
-
-
Batra, J.1
Xu, K.2
Zhou, H.X.3
-
39
-
-
0037470574
-
Effect of dextran on protein stability and conformation attributed to macromolecular crowding
-
K. Sasahara, P. McPhie, and A.P. Minton Effect of dextran on protein stability and conformation attributed to macromolecular crowding J. Mol. Biol. 326 2003 1227 1237
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 1227-1237
-
-
Sasahara, K.1
McPhie, P.2
Minton, A.P.3
-
40
-
-
22144435939
-
Protein self-association induced by macromolecular crowding: A quantitative analysis by magnetic relaxation dispersion
-
K. Snoussi, and B. Halle Protein self-association induced by macromolecular crowding: a quantitative analysis by magnetic relaxation dispersion Biophys. J. 88 2005 2855 2866
-
(2005)
Biophys. J.
, vol.88
, pp. 2855-2866
-
-
Snoussi, K.1
Halle, B.2
-
41
-
-
0037040878
-
Macromolecular crowding accelerates amyloid formation by human apolipoprotein C-II
-
D.M. Hatters, A.P. Minton, and G.J. Howlett Macromolecular crowding accelerates amyloid formation by human apolipoprotein C-II J. Biol. Chem. 277 2002 7824 7830
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 7824-7830
-
-
Hatters, D.M.1
Minton, A.P.2
Howlett, G.J.3
-
42
-
-
77950158041
-
Generalized fundamental measure theory for atomistic modeling of macromolecular crowding
-
S. Qin, and H.X. Zhou Generalized fundamental measure theory for atomistic modeling of macromolecular crowding Phys. Rev. E. 81 2010 031919
-
(2010)
Phys. Rev. E.
, vol.81
, pp. 031919
-
-
Qin, S.1
Zhou, H.X.2
-
43
-
-
3042594710
-
Electrostatically optimized Ras-binding Ral guanine dissociation stimulator mutants increase the rate of association by stabilizing the encounter complex
-
C. Kiel, and T. Selzer C. Herrmann Electrostatically optimized Ras-binding Ral guanine dissociation stimulator mutants increase the rate of association by stabilizing the encounter complex Proc. Natl. Acad. Sci. USA 101 2004 9223 9228
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 9223-9228
-
-
Kiel, C.1
Selzer, T.2
Herrmann, C.3
-
44
-
-
0033923367
-
Rational design of faster associating and tighter binding protein complexes
-
T. Selzer, S. Albeck, and G. Schreiber Rational design of faster associating and tighter binding protein complexes Nat. Struct. Biol. 7 2000 537 541
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 537-541
-
-
Selzer, T.1
Albeck, S.2
Schreiber, G.3
-
45
-
-
0035889692
-
New insights into the mechanism of protein-protein association
-
T. Selzer, and G. Schreiber New insights into the mechanism of protein-protein association Proteins 45 2001 190 198
-
(2001)
Proteins
, vol.45
, pp. 190-198
-
-
Selzer, T.1
Schreiber, G.2
-
46
-
-
68949143016
-
Common crowding agents have only a small effect on protein-protein interactions
-
Y. Phillip, and E. Sherman G. Schreiber Common crowding agents have only a small effect on protein-protein interactions Biophys. J. 97 2009 875 885
-
(2009)
Biophys. J.
, vol.97
, pp. 875-885
-
-
Phillip, Y.1
Sherman, E.2
Schreiber, G.3
-
47
-
-
27544506449
-
Separating the contribution of translational and rotational diffusion to protein association
-
Y.Y. Kuttner, and N. Kozer G. Haran Separating the contribution of translational and rotational diffusion to protein association J. Am. Chem. Soc. 127 2005 15138 15144
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 15138-15144
-
-
Kuttner, Y.Y.1
Kozer, N.2
Haran, G.3
-
48
-
-
33947667899
-
Protein-protein association in polymer solutions: From dilute to semidilute to concentrated
-
N. Kozer, and Y.Y. Kuttner G. Schreiber Protein-protein association in polymer solutions: from dilute to semidilute to concentrated Biophys. J. 92 2007 2139 2149
-
(2007)
Biophys. J.
, vol.92
, pp. 2139-2149
-
-
Kozer, N.1
Kuttner, Y.Y.2
Schreiber, G.3
-
49
-
-
27744475701
-
Anomalous diffusion of proteins due to molecular crowding
-
D.S. Banks, and C. Fradin Anomalous diffusion of proteins due to molecular crowding Biophys. J. 89 2005 2960 2971
-
(2005)
Biophys. J.
, vol.89
, pp. 2960-2971
-
-
Banks, D.S.1
Fradin, C.2
-
51
-
-
68949083274
-
Effect of macromolecular crowding on protein binding stability: Modest stabilization and significant biological consequences
-
J. Batra, and K. Xu H.X. Zhou Effect of macromolecular crowding on protein binding stability: modest stabilization and significant biological consequences Biophys. J. 97 2009 906 911
-
(2009)
Biophys. J.
, vol.97
, pp. 906-911
-
-
Batra, J.1
Xu, K.2
Zhou, H.X.3
-
52
-
-
77950792003
-
Diffusion, crowding and protein stability in a dynamic molecular model of the bacterial cytoplasm
-
S.R. McGuffee, and A.H. Elcock Diffusion, crowding and protein stability in a dynamic molecular model of the bacterial cytoplasm PLoS Comput. Biol. 6 2010 e1000694
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. 1000694
-
-
McGuffee, S.R.1
Elcock, A.H.2
|