메뉴 건너뛰기




Volumn 7, Issue 1, 2012, Pages

Targeted massive parallel sequencing: The effective detection of novel causative mutations associated with hearing loss in small families

Author keywords

Gene; Hearing loss; Heterogeneous; Mutation; Next generation sequencing

Indexed keywords

ARTICLE; AUDIOGRAPHY; CLINICAL ARTICLE; FAMILIAL DISEASE; FEMALE; GENE MUTATION; GENE SEQUENCE; GENETIC ANALYSIS; GENOTYPE; HEARING IMPAIRMENT; HEREDITARY ATAXIA; HEREDITY; HUMAN; MALE; MISSENSE MUTATION; NONSENSE MUTATION;

EID: 84865589542     PISSN: None     EISSN: 17501172     Source Type: Journal    
DOI: 10.1186/1750-1172-7-60     Document Type: Article
Times cited : (70)

References (53)
  • 1
    • 39649117755 scopus 로고    scopus 로고
    • The impact of next-generation sequencing technology on genetics
    • 10.1016/j.tig.2007.12.007 18262675
    • The impact of next-generation sequencing technology on genetics. Mardis ER, Trends Genet: TIG 2008 24 3 133 141 10.1016/j.tig.2007.12.007 18262675
    • (2008) Trends Genet: TIG , vol.24 , Issue.3 , pp. 133-141
    • Mardis, E.R.1
  • 2
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies - The next generation
    • 10.1038/nrg2626 19997069
    • Sequencing technologies-the next generation. Metzker ML, Nat Rev Genet 2010 11 1 31 46 10.1038/nrg2626 19997069
    • (2010) Nat Rev Genet , vol.11 , Issue.1 , pp. 31-46
    • Metzker, M.L.1
  • 3
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • 10.1038/nbt1486 18846087
    • Next-generation DNA sequencing. Shendure J, Ji H, Nat Biotechnol 2008 26 10 1135 1145 10.1038/nbt1486 18846087
    • (2008) Nat Biotechnol , vol.26 , Issue.10 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 4
    • 1942499454 scopus 로고    scopus 로고
    • Advanced sequencing technologies: Methods and goals
    • DOI 10.1038/nrg1325
    • Advanced sequencing technologies: methods and goals. Shendure J, Mitra RD, Varma C, Church GM, Nat Rev Genet 2004 5 5 335 344 15143316 (Pubitemid 38529405)
    • (2004) Nature Reviews Genetics , vol.5 , Issue.5 , pp. 335-344
    • Shendure, J.1    Mitra, R.D.2    Varma, C.3    Church, G.M.4
  • 5
    • 77955084820 scopus 로고    scopus 로고
    • Whole exome sequencing and homozygosity mapping identify mutation in the cell polarity protein GPSM2 as the cause of nonsyndromic hearing loss DFNB82
    • 10.1016/j.ajhg.2010.05.010 20602914
    • Whole exome sequencing and homozygosity mapping identify mutation in the cell polarity protein GPSM2 as the cause of nonsyndromic hearing loss DFNB82. Walsh T, Shahin H, Elkan-Miller T, Lee MK, Thornton AM, Roeb W, Abu Rayyan A, Loulus S, Avraham KB, King MC, et al. Am J Hum Genet 2010 87 1 90 94 10.1016/j.ajhg.2010.05.010 20602914
    • (2010) Am J Hum Genet , vol.87 , Issue.1 , pp. 90-94
    • Walsh, T.1    Shahin, H.2    Elkan-Miller, T.3    Lee, M.K.4    Thornton, A.M.5    Roeb, W.6    Abu Rayyan, A.7    Loulus, S.8    Avraham, K.B.9    King, M.C.10
  • 6
    • 0028227613 scopus 로고
    • Nonsyndromic hearing loss: An analysis of audiograms
    • Nonsyndromic hearing loss: an analysis of audiograms. Liu X, Xu L, Ann Otol Rhinol Laryngol 1994 103 6 428 433 8203808 (Pubitemid 24192808)
    • (1994) Annals of Otology, Rhinology and Laryngology , vol.103 , Issue.6 , pp. 428-433
    • Liu, X.1    Xu, L.2
  • 7
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Base-calling of automated sequencer traces using phred. II. Error probabilities. Ewing B, Green P, Genome Res 1998 8 3 186 194 9521922 (Pubitemid 28177230)
    • (1998) Genome Research , vol.8 , Issue.3 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 8
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Ewing B, Hillier L, Wendl MC, Green P, Genome Res 1998 8 3 175 185 9521921 (Pubitemid 28177229)
    • (1998) Genome Research , vol.8 , Issue.3 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 9
    • 80051606112 scopus 로고    scopus 로고
    • Exome Sequencing Reveals a Homozygous SYT14 Mutation in Adult-Onset, Autosomal-Recessive Spinocerebellar Ataxia with Psychomotor Retardation
    • 10.1016/j.ajhg.2011.07.012 21835308
    • Exome Sequencing Reveals a Homozygous SYT14 Mutation in Adult-Onset, Autosomal-Recessive Spinocerebellar Ataxia with Psychomotor Retardation. Doi H, Yoshida K, Yasuda T, Fukuda M, Fukuda Y, Morita H, Ikeda S, Kato R, Tsurusaki Y, Miyake N, et al. Am J Hum Genet 2011 89 2 320 327 10.1016/j.ajhg.2011.07.012 21835308
    • (2011) Am J Hum Genet , vol.89 , Issue.2 , pp. 320-327
    • Doi, H.1    Yoshida, K.2    Yasuda, T.3    Fukuda, M.4    Fukuda, Y.5    Morita, H.6    Ikeda, S.7    Kato, R.8    Tsurusaki, Y.9    Miyake, N.10
  • 12
    • 0034002166 scopus 로고    scopus 로고
    • A new locus for late-onset, progressive, hereditary hearing loss DFNA20 maps to 17q25
    • DOI 10.1006/geno.1999.6058
    • A new locus for late-onset, progressive, hereditary hearing loss DFNA20 maps to 17q25. Morell RJ, Friderici KH, Wei S, Elfenbein JL, Friedman TB, Fisher RA, Genomics 2000 63 1 1 6 10.1006/geno.1999.6058 10662538 (Pubitemid 30112232)
    • (2000) Genomics , vol.63 , Issue.1 , pp. 1-6
    • Morell, R.J.1    Friderici, K.H.2    Wei, S.3    Elfenbein, J.L.4    Friedman, T.B.5    Fisher, R.A.6
  • 16
    • 0030707797 scopus 로고    scopus 로고
    • Nonsyndromic deafness DFNA1 associated with mutation of a human homolog of the Drosophila gene diaphanous
    • DOI 10.1126/science.278.5341.1315
    • Nonsyndromic deafness DFNA1 associated with mutation of a human homolog of the Drosophila gene diaphanous. Lynch ED, Lee MK, Morrow JE, Welcsh PL, Leon PE, King MC, Science 1997 278 5341 1315 1318 10.1126/science.278.5341.1315 9360932 (Pubitemid 27495747)
    • (1997) Science , vol.278 , Issue.5341 , pp. 1315-1318
    • Lynch, E.D.1    Lee, M.K.2    Morrow, J.E.3    Welcsh, P.L.4    Leon, P.E.5    King, M.-C.6
  • 20
    • 0034176621 scopus 로고    scopus 로고
    • WFS1 gene mutation search in depressive patients: Detection of five missense polymorphisms but no association with depression or bipolar affective disorder
    • DOI 10.1016/S0165-0327(99)00099-3, PII S0165032799000993
    • WFS1 gene mutation search in depressive patients: detection of five missense polymorphisms but no association with depression or bipolar affective disorder. Ohtsuki T, Ishiguro H, Yoshikawa T, Arinami T, J Affect Disord 2000 58 1 11 17 10.1016/S0165-0327(99)00099-3 10760554 (Pubitemid 30173207)
    • (2000) Journal of Affective Disorders , vol.58 , Issue.1 , pp. 11-17
    • Ohtsuki, T.1    Ishiguro, H.2    Yoshikawa, T.3    Arinami, T.4
  • 21
    • 45749115837 scopus 로고    scopus 로고
    • A novel WFS1 mutation in a family with dominant low frequency sensorineural hearing loss with normal VEMP and EcochG findings
    • 18518985
    • A novel WFS1 mutation in a family with dominant low frequency sensorineural hearing loss with normal VEMP and EcochG findings. Bramhall NF, Kallman JC, Verrall AM, Street VA, BMC Med Genet 2008 9 48 18518985
    • (2008) BMC Med Genet , vol.9 , pp. 48
    • Bramhall, N.F.1    Kallman, J.C.2    Verrall, A.M.3    Street, V.A.4
  • 23
    • 0035958757 scopus 로고    scopus 로고
    • The crystal structure of uncomplexed actin in the ADR state
    • The crystal structure of uncomplexed actin in the ADP state. Otterbein LR, Graceffa P, Dominguez R, Science 2001 293 5530 708 711 10.1126/science. 1059700 11474115 (Pubitemid 32728675)
    • (2001) Science , vol.293 , Issue.5530 , pp. 708-711
    • Otterbein, L.R.1    Graceffa, P.2    Dominguez, R.3
  • 26
    • 0041758426 scopus 로고    scopus 로고
    • The formins: Active scaffolds that remodel the cytoskeleton
    • DOI 10.1016/S0962-8924(03)00153-3
    • The formins: active scaffolds that remodel the cytoskeleton. Wallar BJ, Alberts AS, Trends Cell Biol 2003 13 8 435 446 10.1016/S0962-8924(03)00153-3 12888296 (Pubitemid 36897648)
    • (2003) Trends in Cell Biology , vol.13 , Issue.8 , pp. 435-446
    • Wallar, B.J.1    Alberts, A.S.2
  • 27
    • 0034759486 scopus 로고    scopus 로고
    • Characterization of functional domains of mDia1, a link between the small GTPase Rho and the actin cytoskeleton
    • Characterization of functional domains of mDia1, a link between the small GTPase Rho and the actin cytoskeleton. Krebs A, Rothkegel M, Klar M, Jockusch BM, J Cell Sci 2001 114 Pt 20 3663 3672 11707518 (Pubitemid 33041048)
    • (2001) Journal of Cell Science , vol.114 , Issue.20 , pp. 3663-3672
    • Krebs, A.1    Rothkegel, M.2    Klar, M.3    Jockusch, B.M.4
  • 28
    • 72949110575 scopus 로고    scopus 로고
    • Unleashing formins to remodel the actin and microtubule cytoskeletons
    • 10.1038/nrm2816 19997130
    • Unleashing formins to remodel the actin and microtubule cytoskeletons. Chesarone MA, DuPage AG, Goode BL, Nat Rev Mol Cell Biol 2010 11 1 62 74 10.1038/nrm2816 19997130
    • (2010) Nat Rev Mol Cell Biol , vol.11 , Issue.1 , pp. 62-74
    • Chesarone, M.A.1    Dupage, A.G.2    Goode, B.L.3
  • 30
    • 44349179335 scopus 로고    scopus 로고
    • Filopodia: Molecular architecture and cellular functions
    • DOI 10.1038/nrm2406, PII NRM2406
    • Filopodia: molecular architecture and cellular functions. Mattila PK, Lappalainen P, Nat Rev 2008 9 6 446 454 10.1038/nrm2406 (Pubitemid 351733400)
    • (2008) Nature Reviews Molecular Cell Biology , vol.9 , Issue.6 , pp. 446-454
    • Mattila, P.K.1    Lappalainen, P.2
  • 31
    • 40149105917 scopus 로고    scopus 로고
    • The role of the FH1 domain and profilin in formin-mediated actin-filament elongation and nucleation
    • 10.1016/j.cub.2007.11.062 18160294
    • The role of the FH1 domain and profilin in formin-mediated actin-filament elongation and nucleation. Paul AS, Pollard TD, Curr Biol 2008 18 1 9 19 10.1016/j.cub.2007.11.062 18160294
    • (2008) Curr Biol , vol.18 , Issue.1 , pp. 9-19
    • Paul, A.S.1    Pollard, T.D.2
  • 32
    • 30844449003 scopus 로고    scopus 로고
    • Molecular details of formin-mediated actin assembly
    • DOI 10.1016/j.ceb.2005.12.011, PII S0955067405001912, Cell Structure and Dynamics
    • Molecular details of formin-mediated actin assembly. Kovar DR, Curr Opin Cell Biol 2006 18 1 11 17 10.1016/j.ceb.2005.12.011 16364624 (Pubitemid 43107602)
    • (2006) Current Opinion in Cell Biology , vol.18 , Issue.1 , pp. 11-17
    • Kovar, D.R.1
  • 33
    • 77953019847 scopus 로고    scopus 로고
    • A novel frameshift mutation of POU4F3 gene associated with autosomal dominant non-syndromic hearing loss
    • 10.1016/j.bbrc.2010.04.132 20434433
    • A novel frameshift mutation of POU4F3 gene associated with autosomal dominant non-syndromic hearing loss. Lee HK, Park HJ, Lee KY, Park R, Kim UK, Biochem Biophys Res Commun 2010 396 3 626 630 10.1016/j.bbrc.2010.04.132 20434433
    • (2010) Biochem Biophys Res Commun , vol.396 , Issue.3 , pp. 626-630
    • Lee, H.K.1    Park, H.J.2    Lee, K.Y.3    Park, R.4    Kim, U.K.5
  • 35
    • 0024205756 scopus 로고
    • The POU domain is a bipartite DNa-binding structure
    • DOI 10.1038/336601a0
    • The POU domain is a bipartite DNA-binding structure. Sturm RA, Herr W, Nature 1988 336 601 604 10.1038/336601a0 2904656 (Pubitemid 19007319)
    • (1988) Nature , vol.336 , Issue.6199 , pp. 601-604
    • Sturm, R.A.1    Herr, W.2
  • 36
    • 70350118018 scopus 로고    scopus 로고
    • Comprehensive molecular etiology analysis of nonsyndromic hearing impairment from typical areas in China
    • 10.1186/1479-5876-7-79 19744334
    • Comprehensive molecular etiology analysis of nonsyndromic hearing impairment from typical areas in China. Yuan Y, You Y, Huang D, Cui J, Wang Y, Wang Q, Yu F, Kang D, Yuan H, Han D, et al. J Transl Med 2009 7 79 10.1186/1479-5876-7-79 19744334
    • (2009) J Transl Med , vol.7 , pp. 79
    • Yuan, Y.1    You, Y.2    Huang, D.3    Cui, J.4    Wang, Y.5    Wang, Q.6    Yu, F.7    Kang, D.8    Yuan, H.9    Han, D.10
  • 37
    • 63149159240 scopus 로고    scopus 로고
    • The genetic bases for non-syndromic hearing loss among Chinese
    • 10.1038/jhg.2009.4 19197336
    • The genetic bases for non-syndromic hearing loss among Chinese. Ouyang XM, Yan D, Yuan HJ, Pu D, Du LL, Han DY, Liu XZ, J Hum Genet 2009 54 3 131 140 10.1038/jhg.2009.4 19197336
    • (2009) J Hum Genet , vol.54 , Issue.3 , pp. 131-140
    • Ouyang, X.M.1    Yan, D.2    Yuan, H.J.3    Pu, D.4    Du, L.L.5    Han, D.Y.6    Liu, X.Z.7
  • 38
    • 77952472695 scopus 로고    scopus 로고
    • Hereditary hearing loss and deafness genes in Japan
    • 20437760
    • Hereditary hearing loss and deafness genes in Japan. Ito T, Noguchi Y, Yashima T, Ohno K, Kitamura K, J Med Dent Sci 2010 57 1 1 10 20437760
    • (2010) J Med Dent Sci , vol.57 , Issue.1 , pp. 1-10
    • Ito, T.1    Noguchi, Y.2    Yashima, T.3    Ohno, K.4    Kitamura, K.5
  • 39
    • 70349923565 scopus 로고    scopus 로고
    • Deafness genes in Israel: Implications for diagnostics in the clinic
    • 10.1203/PDR.0b013e3181aabd7f 19390476
    • Deafness genes in Israel: implications for diagnostics in the clinic. Brownstein Z, Avraham KB, Pediatr Res 2009 66 2 128 134 10.1203/PDR. 0b013e3181aabd7f 19390476
    • (2009) Pediatr Res , vol.66 , Issue.2 , pp. 128-134
    • Brownstein, Z.1    Avraham, K.B.2
  • 40
    • 78049269549 scopus 로고    scopus 로고
    • Genetic causes of nonsyndromic hearing loss in Iran in comparison with other populations
    • 10.1038/jhg.2010.96 20739942
    • Genetic causes of nonsyndromic hearing loss in Iran in comparison with other populations. Mahdieh N, Rabbani B, Wiley S, Akbari MT, Zeinali S, J Hum Genet 2010 55 10 639 648 10.1038/jhg.2010.96 20739942
    • (2010) J Hum Genet , vol.55 , Issue.10 , pp. 639-648
    • Mahdieh, N.1    Rabbani, B.2    Wiley, S.3    Akbari, M.T.4    Zeinali, S.5
  • 42
    • 2242473800 scopus 로고    scopus 로고
    • Frequency of the 35delG mutation of the connexin 26 gene (GJB2) in patients with non-syndromic autosome-recessive deafness from Bashkortostan and in ethnic groups of the Volga-Ural region
    • 12068628
    • Frequency of the 35delG mutation of the connexin 26 gene (GJB2) in patients with non-syndromic autosome-recessive deafness from Bashkortostan and in ethnic groups of the Volga-Ural region. Khidiiatova IM, Dzhemileva LU, Khabibulin RM, Khusnutdinova EK, Molekuliarnaia biologiia 2002 36 3 438 441 12068628
    • (2002) Molekuliarnaia Biologiia , vol.36 , Issue.3 , pp. 438-441
    • Khidiiatova, I.M.1    Dzhemileva, L.U.2    Khabibulin, R.M.3    Khusnutdinova, E.K.4
  • 43
    • 48449103433 scopus 로고    scopus 로고
    • Molecular analysis of the GJB2, GJB6 and SLC26A4 genes in Korean deafness patients
    • 10.1016/j.ijporl.2008.05.007 18585793
    • Molecular analysis of the GJB2, GJB6 and SLC26A4 genes in Korean deafness patients. Lee KY, Choi SY, Bae JW, Kim S, Chung KW, Drayna D, Kim UK, Lee SH, Int J Pediatr Otorhinolaryngol 2008 72 9 1301 1309 10.1016/j.ijporl.2008.05.007 18585793
    • (2008) Int J Pediatr Otorhinolaryngol , vol.72 , Issue.9 , pp. 1301-1309
    • Lee, K.Y.1    Choi, S.Y.2    Bae, J.W.3    Kim, S.4    Chung, K.W.5    Drayna, D.6    Kim, U.K.7    Lee, S.H.8
  • 46
    • 0034019466 scopus 로고    scopus 로고
    • The prevalence and expression of inherited connexin 26 mutations associated with nonsyndromic hearing loss in the Israeli population
    • DOI 10.1007/s004390051009
    • The prevalence and expression of inherited connexin 26 mutations associated with nonsyndromic hearing loss in the Israeli population. Sobe T, Vreugde S, Shahin H, Berlin M, Davis N, Kanaan M, Yaron Y, Orr-Urtreger A, Frydman M, Shohat M, et al. Hum Genet 2000 106 1 50 57 10.1007/s004390051009 10982182 (Pubitemid 30156394)
    • (2000) Human Genetics , vol.106 , Issue.1 , pp. 50-57
    • Sobe, T.1    Vreugde, S.2    Shahin, H.3    Berlin, M.4    Davis, N.5    Kanaan, M.6    Yaron, Y.7    Orr-Urtreger, A.8    Frydman, M.9    Shohat, M.10    Avraham, K.B.11
  • 47
    • 77958042531 scopus 로고    scopus 로고
    • Two novel missense mutations in the TECTA gene in Korean families with autosomal dominant nonsyndromic hearing loss
    • 20947814
    • Two novel missense mutations in the TECTA gene in Korean families with autosomal dominant nonsyndromic hearing loss. Sagong B, Park R, Kim YH, Lee KY, Baek JI, Cho HJ, Cho IJ, Kim UK, Lee SH, Ann Clin Lab Sci 2010 40 4 380 385 20947814
    • (2010) Ann Clin Lab Sci , vol.40 , Issue.4 , pp. 380-385
    • Sagong, B.1    Park, R.2    Kim, Y.H.3    Lee, K.Y.4    Baek, J.I.5    Cho, H.J.6    Cho, I.J.7    Kim, U.K.8    Lee, S.H.9
  • 48
    • 79951681986 scopus 로고    scopus 로고
    • Pathogenic effects of a novel mutation (c.664-681del) in KCNQ4 channels associated with auditory pathology
    • 10.1016/j.bbadis.2010.09.001 20832469
    • Pathogenic effects of a novel mutation (c.664-681del) in KCNQ4 channels associated with auditory pathology. Baek JI, Park HJ, Park K, Choi SJ, Lee KY, Yi JH, Friedman TB, Drayna D, Shin KS, Kim UK, Biochim Biophys Acta 2011 1812 4 536 543 10.1016/j.bbadis.2010.09.001 20832469
    • (2011) Biochim Biophys Acta , vol.1812 , Issue.4 , pp. 536-543
    • Baek, J.I.1    Park, H.J.2    Park, K.3    Choi, S.J.4    Lee, K.Y.5    Yi, J.H.6    Friedman, T.B.7    Drayna, D.8    Shin, K.S.9    Kim, U.K.10
  • 49
    • 77951708397 scopus 로고    scopus 로고
    • The Trp117Arg mutation of the COCH gene causes deafness in Koreans
    • 10.1111/j.1399-0004.2009.01362.x 20447147
    • The Trp117Arg mutation of the COCH gene causes deafness in Koreans. Baek JI, Cho HJ, Choi SJ, Kim LS, Zhao C, Sagong BR, Kim UK, Jeong SW, Clin Genet 2010 77 4 399 403 10.1111/j.1399-0004.2009.01362.x 20447147
    • (2010) Clin Genet , vol.77 , Issue.4 , pp. 399-403
    • Baek, J.I.1    Cho, H.J.2    Choi, S.J.3    Kim, L.S.4    Zhao, C.5    Sagong, B.R.6    Kim, U.K.7    Jeong, S.W.8
  • 50
    • 76149139764 scopus 로고    scopus 로고
    • Evidence for a founder mutation causing DFNA5 hearing loss in East Asians
    • 10.1038/jhg.2009.114 19911014
    • Evidence for a founder mutation causing DFNA5 hearing loss in East Asians. Park HJ, Cho HJ, Baek JI, Ben-Yosef T, Kwon TJ, Griffith AJ, Kim UK, J Hum Genet 2010 55 1 59 62 10.1038/jhg.2009.114 19911014
    • (2010) J Hum Genet , vol.55 , Issue.1 , pp. 59-62
    • Park, H.J.1    Cho, H.J.2    Baek, J.I.3    Ben-Yosef, T.4    Kwon, T.J.5    Griffith, A.J.6    Kim, U.K.7
  • 52
    • 80052869041 scopus 로고    scopus 로고
    • Targeted genomic capture and massively parallel sequencing to identify genes for hereditary hearing loss in Middle Eastern families
    • 10.1186/gb-2011-12-9-r89 21917145
    • Targeted genomic capture and massively parallel sequencing to identify genes for hereditary hearing loss in Middle Eastern families. Brownstein Z, Friedman LM, Shahin H, Oron-Karni V, Kol N, Rayyan AA, Parzefall T, Lev D, Shalev S, Frydman M, et al. Genome Biol 2011 12 9 89 10.1186/gb-2011-12-9-r89 21917145
    • (2011) Genome Biol , vol.12 , Issue.9 , pp. 1889
    • Brownstein, Z.1    Friedman, L.M.2    Shahin, H.3    Oron-Karni, V.4    Kol, N.5    Rayyan, A.A.6    Parzefall, T.7    Lev, D.8    Shalev, S.9    Frydman, M.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.