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Volumn 3, Issue 2, 2010, Pages 1406-1413

UASMAs (Universal Automated SNP Mapping Algorithms): A set of algorithms to instantaneously map SNPs in real time to aid functional SNP discovery

Author keywords

[No Author keywords available]

Indexed keywords

BENCHMARKING; CONFORMAL MAPPING; DATABASE SYSTEMS;

EID: 84865541372     PISSN: None     EISSN: 21508097     Source Type: Journal    
DOI: 10.14778/1920841.1921013     Document Type: Article
Times cited : (2)

References (21)
  • 2
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul,S.F. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215,403-410.
    • (1990) J. Mol. Biol. , vol.215 , pp. 403-410
    • Altschul, S.F.1
  • 6
    • 0038098442 scopus 로고    scopus 로고
    • An experimental study of an opportunistic index. Proceedings of the twelfth annual ACM-SIAM symposium on Discrete algorithms
    • Washington, D.C., United States
    • Ferragina, P. and G. Manzini. (2001). An experimental study of an opportunistic index. Proceedings of the twelfth annual ACM-SIAM symposium on Discrete algorithms. Washington, D.C., United States, Society for Industrial and Applied Mathematics.
    • (2001) Society for Industrial and Applied Mathematics
    • Ferragina, P.1    Manzini, G.2
  • 7
    • 33645796213 scopus 로고    scopus 로고
    • Compressed Suffix Arrays and Suffix Trees with Applications to Text Indexing and String Matching
    • Grossi, R. and J. S. Vitter. (2005). Compressed Suffix Arrays and Suffix Trees with Applications to Text Indexing and String Matching. SIAM J. Comput. 35(2): 378-407.
    • (2005) SIAM J. Comput , vol.35 , Issue.2 , pp. 378-407
    • Grossi, R.1    Vitter, J.S.2
  • 8
    • 0037038224 scopus 로고    scopus 로고
    • Genomic medicine--a primer
    • Guttmacher, A. E. and F. S. Collins. (2002). Genomic medicine--a primer. N Engl J Med 347(19): 1512-20.
    • (2002) N Engl J Med , vol.347 , Issue.19 , pp. 1512-1520
    • Guttmacher, A.E.1    Collins, F.S.2
  • 9
    • 0142028977 scopus 로고    scopus 로고
    • Annotating large genomes with exact word matches
    • John Healy, Elizabeth E. Thomas, Jacob T. Schwartz, and Michael Wigler. (2003). Annotating large genomes with exact word matches. Genome Res, 13: 2306-2315.
    • (2003) Genome Res , vol.13 , pp. 2306-2315
    • Healy, J.1    Thomas, E.E.2    Schwartz, J.T.3    Wigler, M.4
  • 10
    • 40749108125 scopus 로고    scopus 로고
    • Compressed indexing and local alignment of DNA
    • Lam, T. W., W. K. Sung, et al. (2008). Compressed indexing and local alignment of DNA. Bioinformatics 24(6): 791-797.
    • (2008) Bioinformatics , vol.24 , Issue.6 , pp. 791-797
    • Lam, T.W.1    Sung, W.K.2
  • 11
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., C. Trapnell, et al. (2009). Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10(3): R25.
    • (2009) Genome Biol , vol.10 , Issue.3
    • Langmead, B.1    Trapnell, C.2
  • 12
    • 55549097836 scopus 로고    scopus 로고
    • Mapping short DNA sequencing reads and calling variants using mapping quality scores
    • Li, H, Ruan J, et al. (2008) Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res., 18, 1851-1858.
    • (2008) Genome Res. , vol.18 , pp. 1851-1858
    • Li, H.1    Ruan, J.2
  • 13
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with burrows-wheeler transform
    • (Oxford, England)
    • Li,H. and Durbin, R. (2009a). Fast and accurate short read alignment with burrows-wheeler transform. Bioinformatics (Oxford, England), 25(14): 1754-1760.
    • (2009) Bioinformatics , vol.25 , Issue.14 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 14
    • 67650711615 scopus 로고    scopus 로고
    • SOAP2: an improved ultrafast tool for short read alignment
    • doi:10.1093/bioinformatics/btp336
    • Li et al. (2009b) SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics, doi:10.1093/bioinformatics/btp336.
    • (2009) Bioinformatics
    • Li1
  • 15
    • 0033066718 scopus 로고    scopus 로고
    • Reputer: fast computation of maximal repeats in complete genomes
    • Kurtz, S. and Schleiermacher, C. (1999). Reputer: fast computation of maximal repeats in complete genomes. Bioinformatics, 15(5): 426-427.
    • (1999) Bioinformatics , vol.15 , Issue.5 , pp. 426-427
    • Kurtz, S.1    Schleiermacher, C.2
  • 16
    • 85028161017 scopus 로고
    • Suffix arrays: A new method for on-line string searches. In SODA '90: Proceedings of the first annual ACM-SIAM symposium on Discrete algorithms
    • Philadelphia, PA, USA
    • Manber, U. and Myers, G. (1990). Suffix arrays: A new method for on-line string searches. In SODA '90: Proceedings of the first annual ACM-SIAM symposium on Discrete algorithms, pages 319-327, Philadelphia, PA, USA. Society for Industrial and Applied Mathematics.
    • (1990) Society for Industrial and Applied Mathematics , pp. 319-327
    • Manber, U.1    Myers, G.2
  • 17
    • 0016942292 scopus 로고
    • A Space-Economical Suffix Tree Construction Algorithm
    • McCreight, E. M. (1976). A Space-Economical Suffix Tree Construction Algorithm. J. ACM 23(2): 262-272.
    • (1976) J. ACM , vol.23 , Issue.2 , pp. 262-272
    • McCreight, E.M.1
  • 18
    • 84865572484 scopus 로고    scopus 로고
    • National Center for Biotechnology Information, dbSNP Home Page. [Online] Available at: [Accessed 10 February 2010]
    • National Center for Biotechnology Information. (2009). dbSNP Home Page. [Online] Available at: http://www.ncbi.nlm.nih.gov/projects/SNP/ [Accessed 10 February 2010].
    • (2009)
  • 19
    • 0041427690 scopus 로고    scopus 로고
    • New text indexing functionalities of the compressed suffix arrays
    • Sadakane, K. (2003). New text indexing functionalities of the compressed suffix arrays. J. Algorithms 48(2): 294-313.
    • (2003) J. Algorithms , vol.48 , Issue.2 , pp. 294-313
    • Sadakane, K.1
  • 20
    • 0035173378 scopus 로고    scopus 로고
    • dbSNP: the NCBI database of genetic variation
    • Sherry, S. T., M. H. Ward, et al. (2001). dbSNP: the NCBI database of genetic variation. Nucleic Acids Res 29(1): 308-11.
    • (2001) Nucleic Acids Res , vol.29 , Issue.1 , pp. 308-311
    • Sherry, S.T.1    Ward, M.H.2
  • 21
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith, T. F. and M. S. Waterman. (1981). Identification of common molecular subsequences. J Mol Biol 147(1): 195-7.
    • (1981) J Mol Biol , vol.147 , Issue.1 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.