-
2
-
-
84859042551
-
Consortium 2012 Design of a bovine lowdensity SNP array optimized for imputation
-
Boichard, D., Chung, H., Dassonneville, R., David, X., Eggen, A., Fritz, S., Gietzen, K. J., Hayes, B. J., Lawley, C. T., Sonstegard, T. S., Van Tassell, C. P., Vanraden, P. M., Viaud-Martinez, K. A., Wiggans, G. R. & for the Bovine LD Consortium. (2012). Design of a bovine lowdensity SNP array optimized for imputation. PLoS One 7, e34130.
-
PLoS One
, vol.7
-
-
Boichard, D.1
Chung, H.2
Dassonneville, R.3
David, X.4
Eggen, A.5
Fritz, S.6
Gietzen, K.J.7
Hayes, B.J.8
Lawley, C.T.9
Sonstegard, T.S.10
Van Tassell, C.P.11
Vanraden, P.M.12
Viaud-Martinez, K.A.13
Wiggans, G.R.14
Bovine, L.D.15
-
3
-
-
62649155943
-
A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals
-
Browning, B. L. & Browning, S. R. (2009). A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. American Journal of Human Genetics 84, 210-223.
-
(2009)
American Journal of Human Genetics
, vol.84
, pp. 210-223
-
-
Browning, B.L.1
Browning, S.R.2
-
4
-
-
80052557364
-
Imputation of missing single nucleotide polymorphism genotypes using a multivariate mixed model framework
-
Calus, M. P. L., Veerkamp, R. F. & Mulder, H. A. (2011). Imputation of missing single nucleotide polymorphism genotypes using a multivariate mixed model framework. Journal of Animal Science 89, 2042-2049.
-
(2011)
Journal of Animal Science
, vol.89
, pp. 2042-2049
-
-
Calus, M.P.L.1
Veerkamp, R.F.2
Mulder, H.A.3
-
5
-
-
80052679688
-
Imputation of missing genotypes from sparse to high density using long-range phasing
-
Daetwyler, H. D., Wiggans, G. R., Hayes, B. J., Woolliams, J. A. & Goddard, M. E. (2011). Imputation of missing genotypes from sparse to high density using long-range phasing. Genetics 189, 317-327.
-
(2011)
Genetics
, vol.189
, pp. 317-327
-
-
Daetwyler, H.D.1
Wiggans, G.R.2
Hayes, B.J.3
Woolliams, J.A.4
Goddard, M.E.5
-
6
-
-
0018465664
-
Composite classifier system design: Concepts and methodology
-
Dasarathy, B. V. & Sheela, B. V. (1978). Composite classifier system design: concepts and methodology. Proceedings of the IEEE 67, 708-713.
-
(1978)
Proceedings of the IEEE
, vol.67
, pp. 708-713
-
-
Dasarathy, B.V.1
Sheela, B.V.2
-
7
-
-
79959332314
-
Effect of imputing markers from a low-density chip on the reliability of genomic breeding values in Holstein populations
-
Dassonneville, R., Brøndum, R. F., Druet, T., Fritz, S., Guillaume, F., Guldbrandtsen, B., Lund, M. S., Ducrocq, V. & Su, G. (2011). Effect of imputing markers from a low-density chip on the reliability of genomic breeding values in Holstein populations. Journal of Dairy Science 94, 3679-3686.
-
(2011)
Journal of Dairy Science
, vol.94
, pp. 3679-3686
-
-
Dassonneville, R.1
Brøndum, R.F.2
Druet, T.3
Fritz, S.4
Guillaume, F.5
Guldbrandtsen, B.6
Lund, M.S.7
Ducrocq, V.8
Su, G.9
-
8
-
-
77950613737
-
A hidden Markov model combining linkage and linkage disequilibrium information for haplotype reconstruction and QTL fine mapping
-
Druet, T. & Georges, M. (2010). A hidden Markov model combining linkage and linkage disequilibrium information for haplotype reconstruction and QTL fine mapping. Genetics 184, 789-798.
-
(2010)
Genetics
, vol.184
, pp. 789-798
-
-
Druet, T.1
Georges, M.2
-
10
-
-
67849094221
-
Genomic selection using low-density marker panels
-
Habier, D., Fernando, R. L. & Dekkers, J. C. M. (2009). Genomic selection using low-density marker panels. Genetics 182, 343-353.
-
(2009)
Genetics
, vol.182
, pp. 343-353
-
-
Habier, D.1
Fernando, R.L.2
Dekkers, J.C.M.3
-
12
-
-
84855698387
-
Accuracy of genotype imputation in sheep breeds
-
Hayes, B. J., Bowman, P. J., Daetwyler, H. D., Kijas, J. W. & van der Werf, J. H. J. (2011). Accuracy of genotype imputation in sheep breeds. Animal Genetics 43, 72-80.
-
Animal Genetics
, vol.43
, pp. 72-80
-
-
Hayes, B.J.1
Bowman, P.J.2
Daetwyler, H.D.3
Kijas, J.W.4
Van Der Werf, J.H.J.5
-
13
-
-
82955176938
-
Genomic selection in plant breeding: A comparison of models
-
Heslot, N., Yang, H. P., Sorrells, M. E. & Jannink, J. L. (2012). Genomic selection in plant breeding: a comparison of models. Crop Science 52, 146-160.
-
(2012)
Crop Science
, vol.52
, pp. 146-160
-
-
Heslot, N.1
Yang, H.P.2
Sorrells, M.E.3
Jannink, J.L.4
-
14
-
-
79960051527
-
A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes
-
Hickey, J. M., Kinghorn, B. P., Tier, B., Wilson, J. F., Dunstan, N. & van der Werf, J. H. J. (2011). A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes. Genetics Selection Evolution 43, 12.
-
(2011)
Genetics Selection Evolution
, vol.43
, pp. 12
-
-
Hickey, J.M.1
Kinghorn, B.P.2
Tier, B.3
Wilson, J.F.4
Dunstan, N.5
Van Der Werf, J.H.J.6
-
15
-
-
67651222400
-
A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
-
Howie, B. N., Donnelly, P. & Marchini, J. (2009). A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genetics 5, e1000529.
-
(2009)
PLoS Genetics
, vol.5
-
-
Howie, B.N.1
Donnelly, P.2
Marchini, J.3
-
16
-
-
0001940458
-
Adaptive mixtures of local experts
-
Jacobs, R. A., Jordan, M. I., Nowlan, S. J. & Hinton, G. E. (1991). Adaptive mixtures of local experts. Neural Computation 3, 79-87.
-
(1991)
Neural Computation
, vol.3
, pp. 79-87
-
-
Jacobs, R.A.1
Jordan, M.I.2
Nowlan, S.J.3
Hinton, G.E.4
-
18
-
-
0000262562
-
Hierarchical mixtures of experts and the EM algorithm
-
Jordan, M. J. & Jacobs, R. A. (1994). Hierarchical mixtures of experts and the EM algorithm. Neural Computation 6, 181-214.
-
(1994)
Neural Computation
, vol.6
, pp. 181-214
-
-
Jordan, M.J.1
Jacobs, R.A.2
-
19
-
-
50449089222
-
Detection of sharing by descent, long-range phasing and haplotype imputation
-
Kong, A., Masson, G., Frigge, M. L., Gylfason, A., Zusmanovich, P., Thorleifsson, G., Olason, P. I., Ingason, A., Steinberg, S., Rafnar, T., Sulem, P., Mouy, M., Jonsson, F., Thorsteinsdottir, U., Gudbjartsson, D. F., Stefansson, H. & Stefansson, K. (2008). Detection of sharing by descent, long-range phasing and haplotype imputation. Nature Genetics 40, 1068-1075.
-
(2008)
Nature Genetics
, vol.40
, pp. 1068-1075
-
-
Kong, A.1
Masson, G.2
Frigge, M.L.3
Gylfason, A.4
Zusmanovich, P.5
Thorleifsson, G.6
Olason, P.I.7
Ingason, A.8
Steinberg, S.9
Rafnar, T.10
Sulem, P.11
Mouy, M.12
Jonsson, F.13
Thorsteinsdottir, U.14
Gudbjartsson, D.F.15
Stefansson, H.16
Stefansson, K.17
-
20
-
-
70350231628
-
Genotype imputation
-
Li, Y., Willer, C., Sanna, S. & Abecasis, G. (2009). Genotype imputation. Annual Review of Genomics and Human Genetics 10, 387-406.
-
(2009)
Annual Review of Genomics and Human Genetics
, vol.10
, pp. 387-406
-
-
Li, Y.1
Willer, C.2
Sanna, S.3
Abecasis, G.4
-
21
-
-
77953808087
-
Genotype imputation for genome-wide association studies
-
Marchini, J. & Howie, B. (2010). Genotype imputation for genome-wide association studies. Nature Review Genetics 11, 499-511.
-
(2010)
Nature Review Genetics
, vol.11
, pp. 499-511
-
-
Marchini, J.1
Howie, B.2
-
22
-
-
67651107321
-
Development and characterization of a high density SNP genotyping assay for cattle
-
Matukumalli, L. K., Lawley, C. T., Schnabel, R. D., Taylor, J. F., Allan, M. F., Heaton, M. P., O'Connell, J., Moore, S. S., Smith, T. P., Sonstegard, T. S. & Van Tassell, C. P. (2009). Development and characterization of a high density SNP genotyping assay for cattle. PLoS One 4, e5350
-
(2009)
PLoS One
, vol.4
-
-
Matukumalli, L.K.1
Lawley, C.T.2
Schnabel, R.D.3
Taylor, J.F.4
Allan, M.F.5
Heaton, M.P.6
O'Connell, J.7
Moore, S.S.8
Smith, T.P.9
Sonstegard, T.S.10
Van Tassell, C.P.11
-
23
-
-
0035045051
-
Prediction of total genetic value using genomewide dense marker maps
-
Meuwissen, T. H. E., Hayes, B. J. & Goddard, M. E. (2001). Prediction of total genetic value using genomewide dense marker maps. Genetics 157, 1819-1829.
-
(2001)
Genetics
, vol.157
, pp. 1819-1829
-
-
Meuwissen, T.H.E.1
Hayes, B.J.2
Goddard, M.E.3
-
24
-
-
33748611921
-
Ensemble based systems in decision making
-
Polikar, R. (2006). Ensemble based systems in decision making. IEEE Circuits and Systems Magazine 6, 21-45.
-
(2006)
IEEE Circuits and Systems Magazine
, vol.6
, pp. 21-45
-
-
Polikar, R.1
-
25
-
-
84858142910
-
Accuracies of genomic breeding values in American Angus beef cattle using K-means clustering for cross-validation
-
Saatchi, M., McClure, M. C., McKay, S. D., Rolf, M. M., Kim, J. W., Decker, J. E., Taxis, T. M., Chapple, R. H., Ramey, H. R., Northcutt, S. L., Bauck, S., Woodward, B., Dekkers, J. C. M., Fernando, R. L., Schnabel, R. D., Garrick, D. J. & Taylor, J. F. (2011). Accuracies of genomic breeding values in American Angus beef cattle using K-means clustering for cross-validation. Genetics Selection Evolution 43, 40.
-
(2011)
Genetics Selection Evolution
, vol.43
, pp. 40
-
-
Saatchi, M.1
McClure, M.C.2
McKay, S.D.3
Rolf, M.M.4
Kim, J.W.5
Decker, J.E.6
Taxis, T.M.7
Chapple, R.H.8
Ramey, H.R.9
Northcutt, S.L.10
Bauck, S.11
Woodward, B.12
Dekkers, J.C.M.13
Fernando, R.L.14
Schnabel, R.D.15
Garrick, D.J.16
Taylor, J.F.17
-
26
-
-
84862527203
-
FImpute - An efficient imputation algorithm for dairy cattle populations
-
E-SUPPL1 Journal of Dairy Science 94(E-Suppl. 1): 421(abstr. 333).
-
Sargolzaei, M., Chesnais, J. P. & Schenkel, F. S. (2011). FImpute - An efficient imputation algorithm for dairy cattle populations. Journal of Animal Science. 89 (E-Suppl. 1)/Journal of Dairy Science 94(E-Suppl. 1): 421 (abstr. 333
-
Journal of Animal Science.
, vol.89
-
-
Sargolzaei, M.1
Chesnais, J.P.2
Schenkel, F.S.3
-
27
-
-
0025448521
-
The strength of weak learnability
-
Schapire, R. E. (1990). The strength of weak learnability. Machine Learning 5, 197-227.
-
(1990)
Machine Learning
, vol.5
, pp. 197-227
-
-
Schapire, R.E.1
-
28
-
-
33644974019
-
A fast and flexible statistical model for large-scale population genotype data
-
Applications To Inferring Missing Genotypes And Haplotypic Phase
-
Scheet, P. & Stephens, M. (2006) A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. American Journal of Human Genetics 78, 629-644.
-
(2006)
American Journal of Human Genetics
, vol.78
, pp. 629-644
-
-
Scheet, P.1
Stephens, M.2
-
29
-
-
80455125337
-
-
Available at Research-Notes/RN-11-02.pdf (accessed 7 March 2012)
-
Sewell, M. (2011). Ensemble learning. Available at http://www-typo3.cs. ucl.ac.uk/fileadmin/UCL-CS/research/ Research-Notes/RN-11-02.pdf (accessed 7 March 2012)
-
(2011)
Ensemble Learning
-
-
Sewell, M.1
-
30
-
-
79955738465
-
Genomic evaluations with many more genotypes
-
VanRaden P.M. O'Connell J.R. Wiggans G.R. VanRaden P.M. O'Connell J.R. Wiggans G.R. Weigel, K. A. (2011). Genomic evaluations with many more genotypes. Genetics Selection Evolution 43, 10.
-
(2011)
Genetics Selection Evolution
, vol.43
, pp. 10
-
-
VanRaden, P.M.1
O'Connell, J.R.2
Wiggans, G.R.3
VanRaden, P.M.4
O'Connell, J.R.5
Wiggans, G.R.6
Weigel, K.A.7
-
31
-
-
70349897495
-
Predictive ability of direct genomic values for lifetime net merit of Holstein sires using selected subsets of single nucleotide polymorphism markers
-
Weigel, K. A., de los Campos, G., Gonzalez-Recio, O., Naya, H., Wu, X. L., Long, N., Rosa, G. J. M. & Gianola, D. (2009). Predictive ability of direct genomic values for lifetime net merit of Holstein sires using selected subsets of single nucleotide polymorphism markers. Journal of Dairy Science 92, 5248-5257.
-
(2009)
Journal of Dairy Science
, vol.92
, pp. 5248-5257
-
-
Weigel, K.A.1
De Los Campos, G.2
Gonzalez-Recio, O.3
Naya, H.4
Wu, X.L.5
Long, N.6
Rosa, G.J.M.7
Gianola, D.8
-
32
-
-
77952054021
-
Prediction of unobserved single nucleotide polymorphism genotypes of Jersey cattle using reference panels and population-based imputation algorithms
-
Weigel, K. A., Van Tassell, C. P., O'Connell, J. R., VanRaden, P. M. & Wiggans, G. R. (2010). Prediction of unobserved single nucleotide polymorphism genotypes of Jersey cattle using reference panels and population-based imputation algorithms. Journal of Dairy Science 93, 2229-2238.
-
(2010)
Journal of Dairy Science
, vol.93
, pp. 2229-2238
-
-
Weigel, K.A.1
Van Tassell, C.P.2
O'Connell, J.R.3
VanRaden, P.M.4
Wiggans, G.R.5
-
33
-
-
0026692226
-
Stacked generalization
-
Wolpert, D. H. (1992). Stacked generalization. Neural Networks 5, 241-259.
-
(1992)
Neural Networks
, vol.5
, pp. 241-259
-
-
Wolpert, D.H.1
-
34
-
-
84872493070
-
Parallel-BayesCpC on OSG: Grid-enabled highthroughput computing for genomic selection in practice
-
Wu, X-L., Hayrettin, O., Duan, H., Bessinger, T., Bauck, S., Woodward, B., Rosa, G. J. M., Weigel, K. A., de Leon, N., Taylor, J. F. & Gianola, D. (2012). Parallel-BayesCpC on OSG: grid-enabled highthroughput computing for genomic selection in practice. International Plant & Animal Genome 2012 (http://www. intlpag.org/web/index.php/abstracts/
-
(2012)
International Plant & Animal Genome 2012
-
-
Wu, X.-L.1
Hayrettin, O.2
Duan, H.3
Bessinger, T.4
Bauck, S.5
Woodward, B.6
Rosa, G.J.M.7
Weigel, K.A.8
De Leon, N.9
Taylor, J.F.10
Gianola, D.11
-
35
-
-
78649359717
-
Marker imputation with lowdensity marker panels in Dutch Holstein cattle
-
poster-abstracts). Zhang, Z. & Druet, T. (2010). Marker imputation with lowdensity marker panels in Dutch Holstein cattle. Journal of Dairy Science 93, 5487-5494.
-
(2010)
Journal of Dairy Science
, vol.93
, pp. 5487-5494
-
-
Zhang, Z.1
Druet, T.2
|