-
1
-
-
77954217602
-
The protein kingdom extended: Ordered and intrinsically disordered proteins, their folding, supramolecular complex formation, and aggregation
-
Turoverov KK, Kuznetsova IM, Uversky VN (2010) The protein kingdom extended: ordered and intrinsically disordered proteins, their folding, supramolecular complex formation, and aggregation. Prog Biophys Mol Biol 102:73-84
-
(2010)
Prog Biophys Mol Biol
, vol.102
, pp. 73-84
-
-
Turoverov, K.K.1
Kuznetsova, I.M.2
Uversky, V.N.3
-
2
-
-
48249097986
-
Intrinsically disordered proteins in human diseases: Introducing the D-2 concept
-
Uversky VN, Oldfield CJ, Dunker AK (2008) Intrinsically disordered proteins in human diseases: introducing the D-2 concept. Annu Rev Biophys 37:215-246
-
(2008)
Annu Rev Biophys
, vol.37
, pp. 215-246
-
-
Uversky, V.N.1
Oldfield, C.J.2
Dunker, A.K.3
-
3
-
-
33847768609
-
Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions
-
Xie HB, Vucetic S, Iakoucheva LM, Oldfield CJ, Dunker AK, Uversky VN et al (2007) Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions. J Proteome Res 6:1882-1898
-
(2007)
J Proteome Res
, vol.6
, pp. 1882-1898
-
-
Xie, H.B.1
Vucetic, S.2
Iakoucheva, L.M.3
Oldfield, C.J.4
Dunker, A.K.5
Uversky, V.N.6
-
4
-
-
34548620297
-
Neuropathology, biochemistry, and biophysics of alpha-synuclein aggregation
-
Uversky VN (2007) Neuropathology, biochemistry, and biophysics of alpha-synuclein aggregation. J Neurochem 103:17-37
-
(2007)
J Neurochem
, vol.103
, pp. 17-37
-
-
Uversky, V.N.1
-
5
-
-
30344432688
-
Assessing protein disorder and induced folding
-
Receveur-Brechot V, Bourhis JM, Uversky VN, Canard B, Longhi S (2006) Assessing protein disorder and induced folding. Proteins 62:24-45
-
(2006)
Proteins
, vol.62
, pp. 24-45
-
-
Receveur-Brechot, V.1
Bourhis, J.M.2
Uversky, V.N.3
Canard, B.4
Longhi, S.5
-
6
-
-
0027354020
-
Quantitative studies of the structure of proteins in solution by fourier-transform infrared-spectroscopy
-
Arrondo JLR, Muga A, Castresana J, Goni FM (1993) Quantitative studies of the structure of proteins in solution by fourier-transform infrared- spectroscopy. Prog Biophys Mol Biol 59:23-56
-
(1993)
Prog Biophys Mol Biol
, vol.59
, pp. 23-56
-
-
Arrondo, J.L.R.1
Muga, A.2
Castresana, J.3
Goni, F.M.4
-
7
-
-
0344672542
-
Structure and dynamics of membrane proteins as studied by infrared spectroscopy
-
Arrondo JLR, Goni FM (1999) Structure and dynamics of membrane proteins as studied by infrared spectroscopy. Prog Biophys Mol Biol 72:367-405
-
(1999)
Prog Biophys Mol Biol
, vol.72
, pp. 367-405
-
-
Arrondo, J.L.R.1
Goni, F.M.2
-
8
-
-
0032831759
-
Fourier transform infrared spectroscopy in analysis of protein deposits
-
Seshadri S, Khurana R, Fink AL (1999) Fourier transform infrared spectroscopy in analysis of protein deposits. Methods Enzymol 309:559-576
-
(1999)
Methods Enzymol
, vol.309
, pp. 559-576
-
-
Seshadri, S.1
Khurana, R.2
Fink, A.L.3
-
10
-
-
0036880493
-
What vibrations tell us about proteins.
-
Barth A, Zscherp C (2002) What vibrations tell us about proteins. Q Rev Biophys 35:369-430
-
(2002)
Q Rev Biophys
, vol.35
, pp. 369-430
-
-
Barth, A.1
Zscherp, C.2
-
11
-
-
34548165708
-
Infrared spectroscopy of proteins
-
Barth A
-
Barth A (2007) Infrared spectroscopy of proteins. Biochim Biophys Acta 1767:1073-1101
-
(2007)
Biochim Biophys Acta
, vol.1767
, pp. 1073-1101
-
-
-
12
-
-
0028709475
-
Determination of soluble and membrane protein structure by Fourier transform infrared spectroscopy. III. Secondary structures
-
Goormaghtigh E, Cabiaux V, Ruysschaert JM (1994) Determination of soluble and membrane protein structure by Fourier transform infrared spectroscopy. III. Secondary structures. Subcell Biochem 23:405-450
-
(1994)
Subcell Biochem
, vol.23
, pp. 405-450
-
-
Goormaghtigh, E.1
Cabiaux, V.2
Ruysschaert, J.M.3
-
13
-
-
78650761784
-
Compact conformations of alpha-synuclein induced by alcohols and copper
-
Natalello A, Benetti F, Doglia SM, Legname G, Grandori R (2011) Compact conformations of alpha-synuclein induced by alcohols and copper. Proteins 79:611-621
-
(2011)
Proteins
, vol.79
, pp. 611-621
-
-
Natalello, A.1
Benetti, F.2
Doglia, S.M.3
Legname, G.4
Grandori, R.5
-
14
-
-
0342862068
-
Solvent deuterium isotope effects on acid-base equilibria
-
Salomaa P, Schaleger LL, Long FA (1964) Solvent deuterium isotope effects on acid-base equilibria. J Am Chem Soc 86:1-7
-
(1964)
J Am Chem Soc
, vol.86
, pp. 1-7
-
-
Salomaa, P.1
Schaleger, L.L.2
Long, F.A.3
-
15
-
-
77949522461
-
Modulation of alpha-synuclein aggregation by dopamine analogs
-
Latawiec D, Herrera F, Bek A, Losasso V, Candotti M, Benetti F et al (2010) Modulation of alpha-synuclein aggregation by dopamine analogs. PLoS One 5:e9234
-
(2010)
PLoS One
, vol.5
-
-
Latawiec, D.1
Herrera, F.2
Bek, A.3
Losasso, V.4
Candotti, M.5
Benetti, F.6
-
16
-
-
12844274977
-
Secondary structure, conformational stability and glycosylation of a recombinant Candida rugosa lipase studied by Fouriertransform infrared spectroscopy
-
Natalello A, Ami D, Brocca S, Lotti M, Doglia SM (2005) Secondary structure, conformational stability and glycosylation of a recombinant Candida rugosa lipase studied by Fouriertransform infrared spectroscopy. Biochem J 385:511-517
-
(2005)
Biochem J
, vol.385
, pp. 511-517
-
-
Natalello, A.1
Ami, D.2
Brocca, S.3
Lotti, M.4
Doglia, S.M.5
-
17
-
-
0025357111
-
Protein secondary structures in water from 2ndderivative amide-I infrared-spectra
-
Dong A, Huang P, Caughey WS (1990) Protein secondary structures in water from 2ndderivative amide-I infrared-spectra. Biochemistry 29:3303-3308
-
(1990)
Biochemistry
, vol.29
, pp. 3303-3308
-
-
Dong, A.1
Huang, P.2
Caughey, W.S.3
-
18
-
-
0022463740
-
Resolution-enhanced Fourier-transform infrared-spectroscopy of enzymes
-
Susi H, Byler DM (1986) Resolution-enhanced Fourier-transform infrared-spectroscopy of enzymes. Methods Enzymol 130:290-311
-
(1986)
Methods Enzymol
, vol.130
, pp. 290-311
-
-
Susi, H.1
Byler, D.M.2
-
19
-
-
0000337013
-
Fourier self-deconvolution - A method for resolving intrinsically overlapped bands
-
Kauppinen JK, Moffatt DJ, Mantsch HH, Cameron DG (1981) Fourier self-deconvolution-a method for resolving intrinsically overlapped bands. Appl Spectrosc 35:271-276
-
(1981)
Appl Spectrosc
, vol.35
, pp. 271-276
-
-
Kauppinen, J.K.1
Moffatt, D.J.2
Mantsch, H.H.3
Cameron, D.G.4
-
20
-
-
0032968077
-
Attenuated total reflection infrared spectroscopy of proteins and lipids in biological membranes
-
Goormaghtigh E, Raussens V, Ruysschaert JM (1999) Attenuated total reflection infrared spectroscopy of proteins and lipids in biological membranes. Biochim Biophys Acta 1422:105-185
-
(1999)
Biochim Biophys Acta
, vol.1422
, pp. 105-185
-
-
Goormaghtigh, E.1
Raussens, V.2
Ruysschaert, J.M.3
-
21
-
-
0037432332
-
Conformational behavior and aggregation of alpha-synuclein in organic solvents: Modeling the effects of membranes
-
Munishkina LA, Phelan C, Uversky VN, Fink AL (2003) Conformational behavior and aggregation of alpha-synuclein in organic solvents: modeling the effects of membranes. Biochemistry 42:2720-2730
-
(2003)
Biochemistry
, vol.42
, pp. 2720-2730
-
-
Munishkina, L.A.1
Phelan, C.2
Uversky, V.N.3
Fink, A.L.4
-
22
-
-
52049098478
-
Structural characteristics of alpha-synuclein oligomers stabilized by the flavonoid baicalein
-
Hong DP, Fink AL, Uversky VN (2008) Structural characteristics of alpha-synuclein oligomers stabilized by the flavonoid baicalein. J Mol Biol 383:214-223
-
(2008)
J Mol Biol
, vol.383
, pp. 214-223
-
-
Hong, D.P.1
Fink, A.L.2
Uversky, V.N.3
-
23
-
-
4444311182
-
Conformational prerequisites for formation of amyloid fibrils from histones
-
Munishkina LA, Fink AL, Uversky VN (2004) Conformational prerequisites for formation of amyloid fibrils from histones. J Mol Biol 342:1305-1324
-
(2004)
J Mol Biol
, vol.342
, pp. 1305-1324
-
-
Munishkina, L.A.1
Fink, A.L.2
Uversky, V.N.3
-
24
-
-
0037031842
-
The Saccharomyces cerevisiae nucleoporin Nup2p is a natively unfolded protein
-
Denning DP, Uversky VN, Patel SS, Fink AL, Rexach M (2002) The Saccharomyces cerevisiae nucleoporin Nup2p is a natively unfolded protein. J Biol Chem 277:33447-33455
-
(2002)
J Biol Chem
, vol.277
, pp. 33447-33455
-
-
Denning, D.P.1
Uversky, V.N.2
Patel, S.S.3
Fink, A.L.4
Rexach, M.5
-
25
-
-
0032528558
-
Intermolecular beta-sheet results from trifluoroethanol-induced nonnative alpha-helical structure in beta-sheet predominant proteins: Infrared and circular dichroism spectroscopic study
-
Dong A, Matsuura J, Manning MC, Carpenter JF (1998) Intermolecular beta-sheet results from trifluoroethanol-induced nonnative alpha-helical structure in beta-sheet predominant proteins: infrared and circular dichroism spectroscopic study. Arch Biochem Biophys 355:275-281
-
(1998)
Arch Biochem Biophys
, vol.355
, pp. 275-281
-
-
Dong, A.1
Matsuura, J.2
Manning, M.C.3
Carpenter, J.F.4
-
26
-
-
25444523218
-
DNA-induced secondary structure of the carboxyl-terminal domain of histone H1
-
Roque A, Iloro I, Ponte I, Arrondo JLR, Suau P (2005) DNA-induced secondary structure of the carboxyl-terminal domain of histone H1. J Biol Chem 280:32141-32147
-
(2005)
J Biol Chem
, vol.280
, pp. 32141-32147
-
-
Roque, A.1
Iloro, I.2
Ponte, I.3
Arrondo, J.L.R.4
Suau, P.5
-
27
-
-
34548722169
-
Macromolecular crowding induces a molten globule state in the C-terminal domain of histone H1
-
Roque A, Ponte I, Suau P (2007) Macromolecular crowding induces a molten globule state in the C-terminal domain of histone H1. Biophys J 93:2170-2177
-
(2007)
Biophys J
, vol.93
, pp. 2170-2177
-
-
Roque, A.1
Ponte, I.2
Suau, P.3
-
28
-
-
49249102932
-
Phosphorylation of the carboxyterminal domain of histone H1: Effects on secondary structure and DNA condensation
-
Roque A, Ponte I, Arrondo JLR, Suau P (2008) Phosphorylation of the carboxyterminal domain of histone H1: effects on secondary structure and DNA condensation. Nucleic Acids Res 36:4719-4726
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 4719-4726
-
-
Roque, A.1
Ponte, I.2
Arrondo, J.L.R.3
Suau, P.4
-
29
-
-
0029064280
-
Ftir spectroscopy of alanine-based peptides-assignment of the amide I0 modes for random coil and helix
-
Martinez G, Millhauser G (1995) Ftir spectroscopy of alanine-based peptides-assignment of the amide I0 modes for random coil and helix. J Struct Biol 114:23-27
-
(1995)
J Struct Biol
, vol.114
, pp. 23-27
-
-
Martinez, G.1
Millhauser, G.2
-
31
-
-
0037370999
-
The hydration of amides in helices; A comprehensive picture from molecular dynamics, IR, and NMR
-
Walsh STR, Cheng RP, Wright WW, Alonso DOV, Daggett V, Vanderkooi JM et al (2003) The hydration of amides in helices; a comprehensive picture from molecular dynamics, IR, and NMR. Protein Sci 12:520-531
-
(2003)
Protein Sci
, vol.12
, pp. 520-531
-
-
Walsh, S.T.R.1
Cheng, R.P.2
Wright, W.W.3
Alonso, D.O.V.4
Daggett, V.5
Vanderkooi, J.M.6
-
32
-
-
9344243513
-
FTIR reveals structural differences between native beta-sheet proteins and amyloid fibrils
-
Zandomeneghi G, Krebs MRH, McCammon MG, Fandrich M (2004) FTIR reveals structural differences between native beta-sheet proteins and amyloid fibrils. Protein Sci 13:3314-3321
-
(2004)
Protein Sci
, vol.13
, pp. 3314-3321
-
-
Zandomeneghi, G.1
Krebs, M.R.H.2
McCammon, M.G.3
Fandrich, M.4
-
33
-
-
0001443463
-
Effects of hydration on the structure, vibrational wavenumbers, vibrational force field and resonance Raman intensities of N-methylacetamide
-
Torii H, Tatsumi T, Tasumi M (1998) Effects of hydration on the structure, vibrational wavenumbers, vibrational force field and resonance Raman intensities of N-methylacetamide. J Raman Spectrosc 29:537-546
-
(1998)
J Raman Spectrosc
, vol.29
, pp. 537-546
-
-
Torii, H.1
Tatsumi, T.2
Tasumi, M.3
-
34
-
-
0034076545
-
Do parallel betahelix proteins have a unique Fourier transform infrared spectrum?
-
Khurana R, Fink AL (2000) Do parallel betahelix proteins have a unique Fourier transform infrared spectrum? Biophys J 78:994-1000
-
(2000)
Biophys J
, vol.78
, pp. 994-1000
-
-
Khurana, R.1
Fink, A.L.2
-
35
-
-
0023442501
-
Fourier-transform infrared study of proteins with parallel betachains
-
Susi H, Byler DM (1987) Fourier-transform infrared study of proteins with parallel betachains. Arch Biochem Biophys 258:465-469
-
(1987)
Arch Biochem Biophys
, vol.258
, pp. 465-469
-
-
Susi, H.1
Byler, D.M.2
-
36
-
-
48749090708
-
Conformational plasticity of the Gerstmann-Straussler-Scheinker disease peptide as indicated by its multiple aggregation pathways
-
Natalello A, Prokorov VV, Tagliavini F, Morbin M, Forloni G, Beeg M et al (2008) Conformational plasticity of the Gerstmann-Straussler-Scheinker disease peptide as indicated by its multiple aggregation pathways. J Mol Biol 381:1349-1361
-
(2008)
J Mol Biol
, vol.381
, pp. 1349-1361
-
-
Natalello, A.1
Prokorov, V.V.2
Tagliavini, F.3
Morbin, M.4
Forloni, G.5
Beeg, M.6
-
37
-
-
0035903114
-
Induction of secondary structure in a COOH-terminal peptide of histone H1 by interaction with the DNA
-
Vila R, Ponte I, ColladoM, Arrondo JLR, Suau P (2001) Induction of secondary structure in a COOH-terminal peptide of histone H1 by interaction with the DNA. J Biol Chem 276:30898-30903
-
(2001)
J Biol Chem
, vol.276
, pp. 30898-30903
-
-
Vila, R.1
Ponte, I.2
Collado, M.3
Arrondo, J.L.R.4
Suau, P.5
-
38
-
-
0032818805
-
FTIR spectroscopic characterization of protein structure in aqueous and non-aqueous media
-
Haris PI, Severcan F (1999) FTIR spectroscopic characterization of protein structure in aqueous and non-aqueous media. J Mol Catal B Enzym 7:207-221
-
(1999)
J Mol Catal B Enzym
, vol.7
, pp. 207-221
-
-
Haris, P.I.1
Severcan, F.2
-
39
-
-
0035997270
-
Automatic amide i frequency selection for rapid quantification of protein secondary structure from Fourier transform infrared spectra of proteins
-
Hering JA, Innocent PR, Haris PI (2002) Automatic amide I frequency selection for rapid quantification of protein secondary structure from Fourier transform infrared spectra of proteins. Proteomics 2:839-849
-
(2002)
Proteomics
, vol.2
, pp. 839-849
-
-
Hering, J.A.1
Innocent, P.R.2
Haris, P.I.3
-
40
-
-
0030249365
-
Differences in conformational dynamics of ribonucleases A and S as observed by infrared spectroscopy and hydrogen-deuterium exchange
-
Dong AC, Hyslop RM, Pringle DL (1996) Differences in conformational dynamics of ribonucleases A and S as observed by infrared spectroscopy and hydrogen-deuterium exchange. Arch Biochem Biophys 333:275-281
-
(1996)
Arch Biochem Biophys
, vol.333
, pp. 275-281
-
-
Dong, A.C.1
Hyslop, R.M.2
Pringle, D.L.3
-
41
-
-
79954618669
-
A major role for side-chain polyglutamine hydrogen bonding in irreversible ataxin-3 aggregation
-
Natalello A, Frana AM, Relini A, Apicella A, Invernizzi G, Casari C et al (2011) A major role for side-chain polyglutamine hydrogen bonding in irreversible ataxin-3 aggregation. PLoS One 6(4):e18789
-
(2011)
PLoS One
, vol.6
, Issue.4
-
-
Natalello, A.1
Frana, A.M.2
Relini, A.3
Apicella, A.4
Invernizzi, G.5
Casari, C.6
-
42
-
-
0034473318
-
The infrared absorption of amino acid side chains
-
Barth A (2000) The infrared absorption of amino acid side chains. Prog Biophys Mol Biol 74:141-173
-
(2000)
Prog Biophys Mol Biol
, vol.74
, pp. 141-173
-
-
Barth, A.1
|