메뉴 건너뛰기




Volumn 95, Issue 9, 2012, Pages 5403-5411

Reliability of genomic prediction for German Holsteins using imputed genotypes from low-density chips

Author keywords

Dairy cattle; Genomic evaluation; Imputation; Low density chip

Indexed keywords

ANIMAL; ANIMAL DISEASE; ARTICLE; BREEDING; CATTLE; DNA MICROARRAY; FEMALE; GENETICS; GENOTYPE; METHODOLOGY; REPRODUCIBILITY; SINGLE NUCLEOTIDE POLYMORPHISM; STANDARD;

EID: 84865322262     PISSN: 00220302     EISSN: 15253198     Source Type: Journal    
DOI: 10.3168/jds.2012-5466     Document Type: Article
Times cited : (44)

References (19)
  • 2
    • 35348817330 scopus 로고    scopus 로고
    • Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering
    • Browning S.R., Browning B.L. Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am. J. Hum. Genet. 2007, 81:1084-1097.
    • (2007) Am. J. Hum. Genet. , vol.81 , pp. 1084-1097
    • Browning, S.R.1    Browning, B.L.2
  • 3
    • 77950332127 scopus 로고    scopus 로고
    • High-resolution detection of identity by decent in unrelated individuals
    • Browning S.R., Browning B.L. High-resolution detection of identity by decent in unrelated individuals. Am. J. Hum. Genet. 2010, 86:526-539.
    • (2010) Am. J. Hum. Genet. , vol.86 , pp. 526-539
    • Browning, S.R.1    Browning, B.L.2
  • 4
    • 84865330571 scopus 로고    scopus 로고
    • Reliability of genomic prediction using imputed genotypes for German Holsteins: Illumina 3K to 50K bovine chip
    • Chen J., Liu Z., Reinhardt F., Reents R. Reliability of genomic prediction using imputed genotypes for German Holsteins: Illumina 3K to 50K bovine chip. Interbull Bull. 2011, 44:51-54.
    • (2011) Interbull Bull. , vol.44 , pp. 51-54
    • Chen, J.1    Liu, Z.2    Reinhardt, F.3    Reents, R.4
  • 6
    • 77950613737 scopus 로고    scopus 로고
    • A hidden Markov model combining linkage and linkage disequilibrium information for haplotype reconstruction and quantitative trait locus fine mapping
    • Druet T., Georges M. A hidden Markov model combining linkage and linkage disequilibrium information for haplotype reconstruction and quantitative trait locus fine mapping. Genetics 2010, 184:789-798.
    • (2010) Genetics , vol.184 , pp. 789-798
    • Druet, T.1    Georges, M.2
  • 7
    • 78649372542 scopus 로고    scopus 로고
    • Imputation of genotypes from different single nucleotide polymorphism panels in dairy cattle
    • Druet T., Schrooten C., de Roos A.P. Imputation of genotypes from different single nucleotide polymorphism panels in dairy cattle. J. Dairy Sci. 2010, 93:5443-5454.
    • (2010) J. Dairy Sci. , vol.93 , pp. 5443-5454
    • Druet, T.1    Schrooten, C.2    de Roos, A.P.3
  • 8
    • 84873984588 scopus 로고    scopus 로고
    • Illumina. Accessed Nov. 4, 2011.
    • Illumina. 2011a. BovineLD Genotyping BeadChip. Accessed Nov. 4, 2011. http://www.illumina.com/documents/products/datasheets/datasheet_bovineLD.pdf.
    • (2011) BovineLD Genotyping BeadChi
  • 9
    • 84873984742 scopus 로고    scopus 로고
    • Illumina. BovineSNP50 Genotyping BeadChip. Accessed Nov. 4, 2011.
    • Illumina. 2011b. BovineSNP50 Genotyping BeadChip. Accessed Nov. 4, 2011. http://www.illumina.com/documents/products/datasheets/datasheet_bovine_snp5O.pdf.
    • (2011)
  • 10
    • 84857253232 scopus 로고    scopus 로고
    • Illumina. Accessed Nov. 4, 2011.
    • Illumina. 2011c. GoldenGate Bovine3K Genotyping BeadChip. Accessed Nov. 4, 2011. http://www.illumina.com/documents//products/datasheets/datasheet_bovine3k.pdf.
    • (2011) GoldenGate Bovine3K Genotyping BeadChip.
  • 11
    • 80052222300 scopus 로고    scopus 로고
    • Impacts of both reference population size and inclusion of a residual polygenic effect on the accuracy of genomic prediction
    • Liu Z., Seefried F., Reinhardt F., Rensing S., Thaller G., Reents R. Impacts of both reference population size and inclusion of a residual polygenic effect on the accuracy of genomic prediction. Genet. Sel. Evol. 2011, 43:19.
    • (2011) Genet. Sel. Evol. , vol.43 , pp. 19
    • Liu, Z.1    Seefried, F.2    Reinhardt, F.3    Rensing, S.4    Thaller, G.5    Reents, R.6
  • 13
    • 33644974019 scopus 로고    scopus 로고
    • A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase
    • Scheet P., Stephens M. A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase. Am. J. Hum. Genet. 2006, 78:629-644.
    • (2006) Am. J. Hum. Genet. , vol.78 , pp. 629-644
    • Scheet, P.1    Stephens, M.2
  • 14
    • 55849133422 scopus 로고    scopus 로고
    • Efficient methods to compute genomic predictions
    • VanRaden P.M. Efficient methods to compute genomic predictions. J. Dairy Sci. 2008, 91:4414-4423.
    • (2008) J. Dairy Sci. , vol.91 , pp. 4414-4423
    • VanRaden, P.M.1
  • 15
    • 82155170576 scopus 로고    scopus 로고
    • Harmful recessive effects on fertility detected by absence of homozygous haplotypes
    • VanRaden P.M., Olson K.M., Null D.J., Hutchison J.L. Harmful recessive effects on fertility detected by absence of homozygous haplotypes. J. Dairy Sci. 2011, 94:6153-6161.
    • (2011) J. Dairy Sci. , vol.94 , pp. 6153-6161
    • VanRaden, P.M.1    Olson, K.M.2    Null, D.J.3    Hutchison, J.L.4
  • 16
    • 70349897495 scopus 로고    scopus 로고
    • Predictive ability of direct genomic values for lifetime net merit of Holstein sires using selected subsets of single nucleotide polymorphism markers
    • Weigel K.A., de los Campos G., Gonzalez-Recio O., Naya H., Wu X.L., Long N., Rosa G.J., Gianola D. Predictive ability of direct genomic values for lifetime net merit of Holstein sires using selected subsets of single nucleotide polymorphism markers. J. Dairy Sci. 2009, 92:5248-5257.
    • (2009) J. Dairy Sci. , vol.92 , pp. 5248-5257
    • Weigel, K.A.1    de los Campos, G.2    Gonzalez-Recio, O.3    Naya, H.4    Wu, X.L.5    Long, N.6    Rosa, G.J.7    Gianola, D.8
  • 17
    • 78649235216 scopus 로고    scopus 로고
    • Accuracy of direct genomic values derived from imputed single nucleotide polymorphism genotypes in Jersey cattle
    • Weigel K.A., de los Campos G., Vazquez A.I., Rosa G.J., Gianola D., Van Tassell C.P. Accuracy of direct genomic values derived from imputed single nucleotide polymorphism genotypes in Jersey cattle. J. Dairy Sci. 2010, 93:5423-5435.
    • (2010) J. Dairy Sci. , vol.93 , pp. 5423-5435
    • Weigel, K.A.1    de los Campos, G.2    Vazquez, A.I.3    Rosa, G.J.4    Gianola, D.5    Van Tassell, C.P.6
  • 19
    • 78649359717 scopus 로고    scopus 로고
    • Marker imputation with low-density marker panels in Dutch Holstein cattle
    • Zhang Z., Druet T. Marker imputation with low-density marker panels in Dutch Holstein cattle. J. Dairy Sci. 2010, 93:5487-5494.
    • (2010) J. Dairy Sci. , vol.93 , pp. 5487-5494
    • Zhang, Z.1    Druet, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.