Accumulation of starch in Zn-deficient rice

Rice

Volumn 5, Issue 1, 2012, Pages

  Suzuki, Motofumi ^a   Bashir, Khurram ^a   Inoue, Haruhiko ^a   Takahashi, Michiko ^a   Nakanishi, Hiromi ^a   Nishizawa, Naoko K ^a,b  

^a UNIVERSITY OF TOKYO   (Japan)

^b ISHIKAWA PREFECTURAL UNIVERSITY   (Japan)

Author keywords

Microarray; Rice; RNase; Starch accumulation; Zinc; Zinc deficiency

Indexed keywords

EID: 84865109401     PISSN: 19398425     EISSN: 19398433     Source Type: Journal    
DOI: 10.1186/1939-8433-5-9     Document Type: Article

References (50)

1. Baroja-Fernández E, Muñoz FJ, Zandueta-Criado A, Morán-Zorzano MT, Viale AM, Alonso-Casajús N, Pozueta-Romero J (2004) Most of ADP·glucose linked to starch biosynthesis occurs outside the chloroplast in source leaves. Proc Natl Acad Sci USA 101(35):13080-13085
2. Bashir K, Nishizawa NK (2006) Deoxymugineic acid synthase: A gene important for Feacquisition and homeostasis. Plant Signal Behav 1(6):292
3. Bashir K, Inoue H, Nagasaka S, Takahashi M, Nakanishi H, Mori S, Nishizawa N (2006) Cloning and characterization of deoxymugineic acid synthase genes from graminaceous plants. J Biol Chem 281(43):32395-32402
4. Bashir K, Ishimaru Y, Nishizawa NK (2010) Iron uptake and loading into rice grains. Rice 3(2):122-130
5. Bashir K, Ishimaru Y, Shimo H, Nagasaka S, Fujimoto M, Takanashi H, Tsutsumi N, An G, Nakanishi H, Nishizawa NK (2011) The rice mitochondrial iron transporter is essential for plant growth. Nat Commun 2:322. doi:10.1038/ncomms1326
6. Broadley MR, White PJ, Hammond JP, Zelko I, Lux A (2007) Zinc in plants. New Phytol 173(4):677-702
7. Cakmak I, Gülüt KY, Marschner H, Graham RD (1994) Efect of zinc and iron deficiency on phytosiderophore release in wheat genotypes differing in zinc efficiency. J Plant Nutr 17(1):1-17
8. Cakmak I, Sari N, Marschner H, Ekiz H, Kalayci M, Yilmaz A, Braun HJ (1996) Phytosiderophore release in bread and durum wheat genotypes differing in zinc efficiency. Plant Soil 180(2):183-189
9. Cakmak I, Ekiz H, Yilmaz A, Torun B, Köleli N, Gültekin I, Alkan A, Eker S (1997) Differential response of rye, triticale, bread and durum wheats to zinc deficiency in calcareous soils. Plant Soil 188(1):1-10
10. Gao X, Zou C, Zhang F, van der Zee S, Hoffland E (2005) Tolerance to zinc deficiency in rice correlates with zinc uptake and translocation. Plant Soil 278(1):253-261
11. Hacisalihoglu G, Hart JJ, Wang Y-H, Cakmak I, Kochian LV (2003) Zinc efficiency is correlated with enhanced expression and activity of zinc-requiring enzymes in wheat. Plant Physiol 131(2):595-602
12. Hajiboland R, Yang XE, Römheld V, Neumann G (2005) Effect of bicarbonate on elongation and distribution of organic acids in root and root zone of Zn-efficient and Zn-inefficient rice (Oryza sativa L.) genotypes. Environ Exp Bot 54(2):163-173
13. Hoffland E, Wei C, Wissuwa M (2006) Organic anion exudation by lowland rice (Oryza sativa L.) at zinc and phosphorus deficiency. Plant Soil 283(1):155-162
14. Inoue H, Higuchi K, Takahashi M, Nakanishi H, Mori S, Nishizawa NK (2003) Three rice nicotianamine synthase genes, OsNAS1, OsNAS2, and OsNAS3 are expressed in cells involved in long-distance transport of iron and differentially regulated by iron. Plant J 36(3):366-381
15. Ishimaru Y, Suzuki M, Kobayashi T, Takahashi M, Nakanishi H, Mori S, Nishizawa NK (2005) OsZIP4, a novel zinc-regulated zinc transporter in rice. J Exp Bot 56(422):3207-3214
16. Ishimaru Y, Masuda H, Suzuki M, Bashir K, Takahashi M, Nakanishi H, Mori S, Nishizawa NK (2007) Overexpression of the OsZIP4 zinc transporter confers disarrangement of zinc distribution in rice plants. J Exp Bot 58(11):2909-2915
17. Ishimaru Y, Bashir K, Fujimoto M, An G, Itai R, Tsutsumi N, Nakanishi H, Nishizawa NK (2009) Rice-specific mitochondrial iron-regulated gene (MIR) plays an important role in iron homeostasis. Mol Plant 2(5):1059-1066
18. Ishimaru Y, Bashir K, Nishizawa NK (2011) Zn uptake and translocation in rice plants. Rice 4(1):21-27
19. Kitagishi K, Obata H (1986) Effects of zinc on the nitrogen metabolism of meristematic tissues of rice plants with reference to protein synthesis. Soil Sci Plant Nutr 32(3):397-405
20. Kurihara H, Nonaka T, Mitsui Y, Ohgi K, Irie M, Nakamura KT (1996) The crystal structure of ribonuclease Rh from Rhizopus niveus at 2.0 Å resolution. J Mol Biol 255(2):310-320
21. Lee S, Jeong H, Kim S, Lee J, Guerinot M, An G (2010) OsZIP5 is a plasma membrane zinc transporter in rice. Plant Mol Biol 73(4):507-517
22. Ma JF, Shinada T, Matsuda C, Nomoto K (1995) Biosynthesis of phytosiderophores, mugineic acids, associated with methionine cycling. J Biol Chem 270(28):16549-16554
23. Ma JF, Taketa S, Chang Y-C, Iwashita T, Matsumoto H, Takeda K, Nomoto K (1999) Genes controlling hydroxylations of phytosiderophores are located on different chromosomes in barley (Hordeum vulgare L.). Planta 207(4):590-596
24. MacIntosh G, Hillwig M, Meyer A, Flagel L (2010) RNase T2 genes from rice and the evolution of secretory ribonucleases in plants. Mol Genet Genomics 283(4):381-396
25. Marschner H (1995) Mineral nutrition of higher plants, 2nd edn. Academic, London, pp 347-364
26. Marschner H, Cakmak I (1989) High light intensity enhances chlorosis and necrosis in leaves of zinc, potassium, and magnesium deficient bean (Phaseolus vulgaris) plants. J Plant Physiol 134:308-315
27. Mori S, Nishizawa NK (1987) Methionine as a dominant precursor of phytosiderophores in graminaceae plants. Plant Cell Physiol 28(6):1081-1092
28. Nishiyama R, Kato M, Nagata S, Yanagisawa S, Yoneyama T (2012) Identification of Znnicotianamine and Fe-2'-deoxymugineic acid in the phloem saps from rice plants (Oryza sativa L.). Plant and Cell Physiology 53:381-390
29. Ohkama-Ohtsu N, KIshimoto N, Yazaki J, Fujii F, Shinbo K, Shimatani Z, Nagata Y, Hashimoto A, Ohta T, Sato Y et al (2004) Up-regulation of genes for ferritin, RNase, and DnaJ in leaves of rice plants in response to sulfur deficiency. Soil Sci Plant Nutr 50:771-775
30. Pandey N, Pathak GC, Singh AK, Sharma CP (2002) Enzymic changes in response to zinc nutrition. J Plant Physiol 159(10):1151-1153
31. Pearson JN, Rengel Z (1997) Genotypic differences in the production and partitioning of carbohydrates between roots and shoots of wheat grown under zinc or manganese deficiency. Ann Bot 80(6):803-808
32. Ptashnyk M, Roose T, Jones DL, Kirk GJD (2011) Enhanced zinc uptake by rice through phytosiderophore secretion: a modelling study. Plant Cell Environ 34(12):2038-2046
33. Quinlan-Watson TAF (1951) Aldolase activity in zinc-deficient plants. Nature 167(4260):1033-1034
34. Rabijns A, Verboven C, Rouge P, Barre A, Van Damme EJM, Peumans WJ, De Ranter CJ (2002) Structure of an RNase-related protein from Calystegia sepium. Acta Crystallogr Sect D 58(4):627-633
35. Rengel Z, Graham RD (1996) Uptake of zinc from chelate-buffered nutrient solutions by wheat genotypes differing in zinc efficiency. J Exp Bot 47(2):217-226
36. Riechmann JL, Heard J, Martin G, Reuber L, Jiang CZ, Keddie J, Adam L, Pineda O, Ratcliffe OJ, Samaha RR et al (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290(5499):2105-2110
37. Salekdeh GH, Siopongco J, Wade LJ, Ghareyazie B, Bennett J (2002) Proteomic analysis of rice leaves during drought stress and recovery. Proteomics 2(9):1131-1145
38. Sharma CP, Gupta JP, Agarwala SC (1981) Metabolic changes in citrullus subjected to zinc stress. J Plant Nutr 3(1-4):337-344
39. Shojima S, Nishizawa N-K, Fushiya S, Nozoe S, Irifune T, Mori S (1990) Biosynthesis of phytosiderophores: In vitro biosynthesis of 2′-deoxymugineic acid from L-methionine and nicotianamine. Plant Physiol 93(4):1497-1503
40. Smith AM, Zeeman SC, Thorneycroft D, Smith SM (2003) Starch mobilization in leaves. J Exp Bot 54(382):577-583
41. Suzuki M, Takahashi M, Tsukamoto T, Watanabe S, Matsuhashi S, Yazaki J, Kishimoto N, Kikuchi S, Nakanishi H, Mori S et al (2006) Biosynthesis and secretion of mugineic acid family phytosiderophores in zinc-deficient barley. Plant J 48(1):85-97
42. Suzuki M, Tsukamoto T, Inoue H, Watanabe S, Matsuhashi S, Takahashi M, Nakanishi H, Mori S, Nishizawa NK (2008) Deoxymugineic acid increases Zn translocation in Zn-deficient rice plants. Plant Mol Biol 66(6):609-617
43. Van Damme EJM, Hao Q, Barre A, Rougé P, Van Leuven F, Peumans WJ (2000) Major protein of resting rhizomes of Calystegia sepium (Hedge Bindweed) closely resembles plant RNases but has no enzymatic activity. Plant Physiol 122(2):433-446
44. Walter A, Römheld V, Marschner H, Mori S (1994) Is the release of phytosiderophores in zinc-deficient wheat plants a response to impaired iron utilization? Physiol Plant 92(3):493-500
45. Widodo B, Broadley MR, Rose T, Frei M, Pariasca-Tanaka J, Yoshihashi T, Thomson M, Hammond JP, Aprile A, Close TJ et al (2010) Response to zinc deficiency of two rice lines with contrasting tolerance is determined by root growth maintenance and organic acid exudation rates, and not by zinc-transporter activity. New Phytol 186(2):400-414
46. Williams LE, Mills RF (2005) P1B-ATPases-an ancient family of transition metal pumps with diverse functions in plants. Trends Plant Sci 10(10):491-502
47. Wissuwa M, Ismail AM, Yanagihara S (2006) Effects of zinc deficiency on rice growth and genetic factors contributing to tolerance. Plant Physiol 142(2):731-741
48. Wyen NV, Erdei S, Farkas GL (1971) Isolation from avena leaf tissues of a nuclease with the same type of specificity towards RNA and DNA: Accumulation of the enzyme during leaf senescence. Biochim Biophys Acta 232:472-483
49. Yang X, Huang J, Jiang Y, Zhang H-S (2009) Cloning and functional identification of two members of the ZIP (Zrt, Irt-like protein) gene family in rice (Oryza sativa L.). Mol Biol Rep 36(2):281-287
50. Zhang F, Römheld V, Marschner H (1989) Effect of zinc deficiency in wheat on the release of zinc and iron mobilizing root exudates. Z für Pflanzenernährung Bodenkunde 152(2):205-210