-
1
-
-
80053320011
-
pubmed2ensembl: a resource for mining the biological literature on genes
-
Baran, J. et al. (2011) pubmed2ensembl: a resource for mining the biological literature on genes. PLoS ONE, 6, e24716.
-
(2011)
PLoS ONE
, vol.6
-
-
Baran, J.1
-
2
-
-
85121797056
-
Extracting complex biological events with rich graph-based feature sets
-
Boulder, Colorado
-
Björne, J. et al. (2009) Extracting complex biological events with rich graph-based feature sets. In Proceedings of the Workshop on BioNLP: Shared Task. Boulder, Colorado, pp. 10-18.
-
(2009)
Proceedings of the Workshop on BioNLP: Shared Task
, pp. 10-18
-
-
Björne, J.1
-
3
-
-
77954190136
-
Complex event extraction at PubMed scale
-
Björne, J. et al. (2010a) Complex event extraction at PubMed scale, Bioinformatics, 26, i382-390.
-
(2010)
Bioinformatics
, vol.26
-
-
Björne, J.1
-
4
-
-
84857112501
-
Scaling up Biomedical Event Extraction to the Entire PubMed
-
Uppsala, Sweden
-
Björne, J. et al. (2010b) Scaling up Biomedical Event Extraction to the Entire PubMed. BioNLP 2010, Uppsala, Sweden, pp. 28-36.
-
(2010)
BioNLP 2010A
, pp. 28-36
-
-
Björne, J.1
-
5
-
-
77949265998
-
Beyond genes, proteins, and abstracts: identifying scientific claims from full-text biomedical articles
-
Blake, C. (2010) Beyond genes, proteins, and abstracts: identifying scientific claims from full-text biomedical articles. J. Biomed. Inform., 43, 173-189.
-
(2010)
J. Biomed. Inform.
, vol.43
, pp. 173-189
-
-
Blake, C.1
-
6
-
-
75549083295
-
MINT, the molecular interaction database: 2009 update
-
Ceol, A. et al. (2009) MINT, the molecular interaction database: 2009 update. Nucleic Acids Res., 38, D532-D539.
-
(2009)
Nucleic Acids Res
, vol.38
-
-
Ceol, A.1
-
7
-
-
84865092694
-
-
Department of Computer Science, University of Sheffield
-
Cunningham, H. et al. (2011) Processing with GATE. Department of Computer Science, University of Sheffield.
-
(2011)
Processing with GATE
-
-
Cunningham, H.1
-
8
-
-
77949431037
-
LINNAEUS: a species name identification system for biomedical literature
-
Gerner, M. et al. (2010a) LINNAEUS: a species name identification system for biomedical literature. BMC Bioinformatics, 11, 85.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 85
-
-
Gerner, M.1
-
9
-
-
84908464360
-
An exploration of mining gene expression mentions and their anatomical locations from biomedical text
-
Uppsala, Sweden
-
Gerner, M. et al. (2010b) An exploration of mining gene expression mentions and their anatomical locations from biomedical text. In Proceedings of the BioNLP workshop. Uppsala, Sweden, pp. 72-80.
-
(2010)
Proceedings of the BioNLP workshop
, pp. 72-80
-
-
Gerner, M.1
-
10
-
-
49549120418
-
Inter-species normalization of gene mentions with GNAT
-
Hakenberg, J. et al. (2008) Inter-species normalization of gene mentions with GNAT. Bioinformatics, 24, i126-i132.
-
(2008)
Bioinformatics
, vol.24
-
-
Hakenberg, J.1
-
11
-
-
80053441509
-
The GNAT library for local and remote gene mention normalization
-
Hakenberg, J. et al. (2011) The GNAT library for local and remote gene mention normalization. Bioinformatics, 27, 2769-2771.
-
(2011)
Bioinformatics
, vol.27
, pp. 2769-2771
-
-
Hakenberg, J.1
-
12
-
-
79959381867
-
ChemicalTagger: a tool for semantic text-mining in chemistry
-
Hawizy, L. et al. (2011) ChemicalTagger: a tool for semantic text-mining in chemistry. J. Cheminform., 3, 17.
-
(2011)
J. Cheminform.
, vol.3
, pp. 17
-
-
Hawizy, L.1
-
13
-
-
79953325924
-
GeneTUKit: a software for document-level gene normalization
-
Huang, M. et al. (2011) GeneTUKit: a software for document-level gene normalization. Bioinformatics, 27, 1032-1033.
-
(2011)
Bioinformatics
, vol.27
, pp. 1032-1033
-
-
Huang, M.1
-
14
-
-
83455255105
-
U-Compare bio-event meta-service: compatible BioNLP event extraction services
-
Kano, Y. et al. (2011) U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinformatics, 12, 481.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 481
-
-
Kano, Y.1
-
15
-
-
40749087717
-
Corpus annotation for mining biomedical events from literature
-
Kim, J.D. et al. (2008) Corpus annotation for mining biomedical events from literature. BMC Bioinformatics, 9, 10.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 10
-
-
Kim, J.D.1
-
16
-
-
85104042765
-
Overview of BioNLP'09 shared task on event extraction
-
ACL, Boulder, Colorado
-
Kim, J.D. et al. (2009) Overview of BioNLP'09 shared task on event extraction. In Proceedings of the Workshop on BioNLP: Shared Task. ACL, Boulder, Colorado, pp. 1-9.
-
(2009)
Proceedings of the Workshop on BioNLP: Shared Task
, pp. 1-9
-
-
Kim, J.D.1
-
17
-
-
84987798660
-
Overview of Genia event task in BioNLP Shared Task 2011
-
Portland, Oregon, USA
-
Kim, J.-D. et al. (2011) Overview of Genia event task in BioNLP Shared Task 2011. In BioNLP Shared Task 2011, Portland, Oregon, USA, pp. 1-6.
-
(2011)
BioNLP Shared Task 2011
, pp. 1-6
-
-
Kim, J.-D.1
-
18
-
-
51049088875
-
Overview of the protein-protein interaction annotation extraction task of BioCreative II
-
Krallinger, M. et al. (2008a) Overview of the protein-protein interaction annotation extraction task of BioCreative II. Genome Biol., 9 (Suppl. 2), S4.
-
(2008)
Genome Biol
, vol.9
, Issue.SUPPL. 2
-
-
Krallinger, M.1
-
19
-
-
51049110331
-
Linking genes to literature: text mining, information extraction, and retrieval applications for biology
-
Krallinger, M. et al. (2008b) Linking genes to literature: text mining, information extraction, and retrieval applications for biology. Genome Biol., 9 (Suppl. 2), S8.
-
(2008)
Genome Biol
, vol.9
, Issue.SUPPL. 2
-
-
Krallinger, M.1
-
20
-
-
40549140499
-
BANNER: an executable survey of advances in biomedical named entity recognition
-
Hawaii
-
Leaman, R. and Gonzales, G. (2008) BANNER: an executable survey of advances in biomedical named entity recognition. In Pacific Symp. on Biocomputing. Hawaii, pp. 652-663.
-
(2008)
Pacific Symp. on Biocomputing.
, pp. 652-663
-
-
Leaman, R.1
Gonzales, G.2
-
21
-
-
79954533893
-
PubMed and beyond: a survey of web tools for searching biomedical literature
-
baq036
-
Lu, Z. (2011) PubMed and beyond: a survey of web tools for searching biomedical literature. Database, 2011, baq036.
-
(2011)
Database, 2011
-
-
Lu, Z.1
-
22
-
-
84863411425
-
Effective self-training for parsing
-
Brooklyn, New York
-
McClosky, D. et al. (2006) Effective self-training for parsing. In HLT-NAACL, Brooklyn, New York, pp. 152-159.
-
(2006)
HLT-NAACL
, pp. 152-159
-
-
McClosky, D.1
-
25
-
-
77958616587
-
Incorporating GENETAG-style annotation to GENIA corpus
-
Boulder, Colorado
-
Ohta, T. et al. (2009) Incorporating GENETAG-style annotation to GENIA corpus. In BioNLP Workshop. Boulder, Colorado, pp. 106-107.
-
(2009)
BioNLP Workshop
, pp. 106-107
-
-
Ohta, T.1
-
27
-
-
80053413137
-
Comparative parser performance analysis across grammar frameworks through automatic tree conversion using synchronous grammars
-
Manchester, UK
-
Sagae, K. et al. (2008) Comparative parser performance analysis across grammar frameworks through automatic tree conversion using synchronous grammars. In COLING 2008, Manchester, UK, pp. 545-552.
-
(2008)
COLING 2008
, pp. 545-552
-
-
Sagae, K.1
-
28
-
-
80054032619
-
Biomedical event detection using rules, conditional random fields and parse tree distances
-
Boulder, Colorado
-
Sarafraz, F. et al. (2009) Biomedical event detection using rules, conditional random fields and parse tree distances. In BioNLP Workshop. Boulder, Colorado, pp. 115-118.
-
(2009)
BioNLP Workshop
, pp. 115-118
-
-
Sarafraz, F.1
-
30
-
-
25144520247
-
ABNER: an open source tool for automatically tagging genes, proteins, and other entity names in text
-
Settles, B. (2005)ABNER: an open source tool for automatically tagging genes, proteins, and other entity names in text. Bioinformatics, 21, 3191-3192.
-
(2005)
Bioinformatics
, vol.21
, pp. 3191-3192
-
-
Settles, B.1
-
31
-
-
84864074911
-
Gene mention normalization in full texts using GNAT and LINNAEUS
-
Bethesda, USA
-
Solt, I. et al. (2010) Gene mention normalization in full texts using GNAT and LINNAEUS. In Proceedings of the BioCreative III Workshop. Bethesda, USA, pp. 137-142.
-
(2010)
Proceedings of the BioCreative III Workshop
, pp. 137-142
-
-
Solt, I.1
-
32
-
-
78651324347
-
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
-
Szklarczyk, D. et al. (2011) The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res., 39, D561-D568.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Szklarczyk, D.1
-
33
-
-
40049083982
-
Extracting interactions between proteins from the literature
-
Zhou, D. and He, Y. (2008) Extracting interactions between proteins from the literature. J. Biomed. Inform., 41, 393-407.
-
(2008)
J. Biomed. Inform
, vol.41
, pp. 393-407
-
-
Zhou, D.1
He, Y.2
|