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Volumn 191, Issue 4, 2012, Pages 1355-1365

Quantile-based permutation thresholds for quantitative trait loci hotspots

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GENE EXPRESSION; GENE MUTATION; GENOTYPE; NONHUMAN; PRIORITY JOURNAL; QUANTILE BASED PERMUTATION; QUANTITATIVE TRAIT LOCUS; SIMULATION; YEAST;

EID: 84865079468     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.112.139451     Document Type: Article
Times cited : (14)

References (24)
  • 3
    • 13444306165 scopus 로고    scopus 로고
    • The landscape of genetic complexity across 5,700 gene expression traits in yeast
    • Brem, R. B., and L. Kruglyak, 2005 The landscape of genetic complexity across 5,700 gene expression traits in yeast. Proc. Natl. Acad. Sci. USA 102: 1572-1577.
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 1572-1577
    • Brem, R.B.1    Kruglyak, L.2
  • 4
    • 0037177625 scopus 로고    scopus 로고
    • Genetic dissection of transcriptional regulation in budding yeast
    • Brem, R. B., G. Yvert, R. Clinton, and L. Kruglyak, 2002 Genetic dissection of transcriptional regulation in budding yeast. Science 296: 752-755.
    • (2002) Science , vol.296 , pp. 752-755
    • Brem, R.B.1    Yvert, G.2    Clinton, R.3    Kruglyak, L.4
  • 6
    • 0037958742 scopus 로고    scopus 로고
    • R/qtl: QTL mapping in experimental crosses
    • Broman, K. W., W. Wu, and S. Sen, and G. A. Churchill, 2003 R/qtl: QTL mapping in experimental crosses. Bioinformatics 19: 889-890.
    • (2003) Bioinformatics , vol.19 , pp. 889-890
    • Broman, K.W.1    Wu, W.2    Sen, S.3    Churchill, G.A.4
  • 7
    • 33747838783 scopus 로고    scopus 로고
    • Relaxed significance criteria for linkage analysis
    • Chen, L., and J. D. Storey, 2006 Relaxed significance criteria for linkage analysis. Genetics 173: 2371-2381.
    • (2006) Genetics , vol.173 , pp. 2371-2381
    • Chen, L.1    Storey, J.D.2
  • 8
    • 0028151261 scopus 로고
    • Empirical threshold values for quantitative trait mapping
    • Churchill, G. A., and R. W. Doerge, 1994 Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
    • (1994) Genetics , vol.138 , pp. 963-971
    • Churchill, G.A.1    Doerge, R.W.2
  • 9
    • 40849100588 scopus 로고    scopus 로고
    • Naive application of permutation testing leads to inflated type I error rates
    • Churchill, G. A., and R. W. Doerge, 2008 Naive application of permutation testing leads to inflated type I error rates. Genetics 178: 609-610.
    • (2008) Genetics , vol.178 , pp. 609-610
    • Churchill, G.A.1    Doerge, R.W.2
  • 10
    • 0037456820 scopus 로고    scopus 로고
    • Gene expression meets genetics
    • Darvasi, A., 2003 Gene expression meets genetics. Nature 422: 269-270.
    • (2003) Nature , vol.422 , pp. 269-270
    • Darvasi, A.1
  • 11
    • 0032944437 scopus 로고    scopus 로고
    • Statistical methods for mapping quantitative trait loci from a dense set of markers
    • Dupuis, J., and D. Siegmund, 1999 Statistical methods for mapping quantitative trait loci from a dense set of markers. Genetics 151: 373-386.
    • (1999) Genetics , vol.151 , pp. 373-386
    • Dupuis, J.1    Siegmund, D.2
  • 14
    • 33646942472 scopus 로고
    • A simple regression method for mapping quantitative trait loci in line crosses using flanking markers
    • Haley, C., and S. Knott, 1992 A simple regression method for mapping quantitative trait loci in line crosses using flanking markers. Heredity 69: 315-324.
    • (1992) Heredity , vol.69 , pp. 315-324
    • Haley, C.1    Knott, S.2
  • 15
    • 0027247860 scopus 로고
    • Interval mapping of multiple quantitative trait loci
    • Jansen, R. C., 1993 Interval mapping of multiple quantitative trait loci. Genetics 135: 205-211.
    • (1993) Genetics , vol.135 , pp. 205-211
    • Jansen, R.C.1
  • 16
    • 0028348164 scopus 로고
    • High resolution of quantitative traits into multiple loci via interval mapping
    • Jansen, R. C., and P. Stam, 1994 High resolution of quantitative traits into multiple loci via interval mapping. Genetics 136: 1447-1455.
    • (1994) Genetics , vol.136 , pp. 1447-1455
    • Jansen, R.C.1    Stam, P.2
  • 17
    • 0024508964 scopus 로고
    • Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps
    • Lander, E. S., and D. Botstein, 1989 Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121: 185-199.
    • (1989) Genetics , vol.121 , pp. 185-199
    • Lander, E.S.1    Botstein, D.2
  • 19
    • 33748900748 scopus 로고    scopus 로고
    • Poor performance of bootstrap confidence intervals for the location of a quantitative trait locus
    • Manichaikul, A., J. Dupuis, S. Sen, and K. W. Broman, 2006 Poor performance of bootstrap confidence intervals for the location of a quantitative trait locus. Genetics 174: 481-489.
    • (2006) Genetics , vol.174 , pp. 481-489
    • Manichaikul, A.1    Dupuis, J.2    Sen, S.3    Broman, K.W.4
  • 20
    • 62549088774 scopus 로고    scopus 로고
    • A model selection approach for the identification of quantitative trait loci in experimental crosses, allowing epistasis
    • Manichaikul, A., J. Y. Moon, S. Sen, B. S. Yandell, and K. W. Broman, 2009 A model selection approach for the identification of quantitative trait loci in experimental crosses, allowing epistasis. Genetics 181: 1077-1086.
    • (2009) Genetics , vol.181 , pp. 1077-1086
    • Manichaikul, A.1    Moon, J.Y.2    Sen, S.3    Yandell, B.S.4    Broman, K.W.5
  • 21
    • 1642363505 scopus 로고    scopus 로고
    • In silico study of transcriptome genetic variation in outbred populations
    • Perez-Enciso, M., 2004 In silico study of transcriptome genetic variation in outbred populations. Genetics 166: 547-554.
    • (2004) Genetics , vol.166 , pp. 547-554
    • Perez-Enciso, M.1
  • 22
    • 0037456823 scopus 로고    scopus 로고
    • Genetics of gene expression surveyed in maize, mouse and man
    • Schadt, E. E., S. A. Monks, T. A. Drake, A. J. Lusis, N. Che et al., 2003 Genetics of gene expression surveyed in maize, mouse and man. Nature 422: 297-302.
    • (2003) Nature , vol.422 , pp. 297-302
    • Schadt, E.E.1    Monks, S.A.2    Drake, T.A.3    Lusis, A.J.4    Che, N.5
  • 23
    • 34249055193 scopus 로고    scopus 로고
    • Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis
    • West, M. A. L., K. Kim, D. J. Kliebenstein, H. van Leeuwen, R. W. Michelmore et al., 2007 Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis. Genetics 175: 1441-1450.
    • (2007) Genetics , vol.175 , pp. 1441-1450
    • West, M.A.L.1    Kim, K.2    Kliebenstein, D.J.3    van Leeuwen, H.4    Michelmore, R.W.5
  • 24
    • 44949147109 scopus 로고    scopus 로고
    • Gene set enrichment in eQTL data identifies novel annotations and pathway regulators
    • Wu, C., D. L. Delano, N. Mitro, S. V. Su, J. Janes et al., 2008 Gene set enrichment in eQTL data identifies novel annotations and pathway regulators. PLoS Genet. 4: e1000070.
    • (2008) PLoS Genet. , vol.4
    • Wu, C.1    Delano, D.L.2    Mitro, N.3    Su, S.V.4    Janes, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.