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Volumn 191, Issue 4, 2012, Pages 1295-1308

Robust estimation of local genetic ancestry in admixed populations using a nonparametric Bayesian approach

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BAYES THEOREM; EMPIRICAL RESEARCH; GENETIC ANCESTRY; HAPLOTYPE; HEREDITY; HUMAN; INHERITANCE; NONPARAMETRIC TEST; PARAMETERS; POPULATION GENETICS; PRIORITY JOURNAL; PROBABILITY; SENSITIVITY ANALYSIS;

EID: 84865078007     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.112.140228     Document Type: Article
Times cited : (17)

References (34)
  • 1
    • 79958863696 scopus 로고    scopus 로고
    • Enhancements to the ADMIXTURE algorithm for individual ancestry estimation
    • Alexander, D. H., and K. Lange, 2011 Enhancements to the ADMIXTURE algorithm for individual ancestry estimation. BMC Bioinformatics 12: 246.
    • (2011) BMC Bioinformatics , vol.12 , pp. 246
    • Alexander, D.H.1    Lange, K.2
  • 2
    • 69749099417 scopus 로고    scopus 로고
    • Fast modelbased estimation of ancestry in unrelated individuals
    • Alexander, D. H., J. Novembre, and K. Lange, 2009 Fast modelbased estimation of ancestry in unrelated individuals. Genome Res. 19: 1655-1664.
    • (2009) Genome Res. , vol.19 , pp. 1655-1664
    • Alexander, D.H.1    Novembre, J.2    Lange, K.3
  • 3
    • 84898936541 scopus 로고    scopus 로고
    • The infinite hidden Markov model
    • edited by M. J. Beal, Z. Ghahramani, and C. E. Rasmussen. MIT Press, Cambridge, MA
    • Beal, M. J., Z. Ghahramani, and C. E. Rasmussen, 2002 The infinite hidden Markov model, pp. 577-585 in Advances in Neural Information Processing Systems 14, edited by M. J. Beal, Z. Ghahramani, and C. E. Rasmussen. MIT Press, Cambridge, MA.
    • (2002) Advances in Neural Information Processing Systems 14 , pp. 577-585
    • Beal, M.J.1    Ghahramani, Z.2    Rasmussen, C.E.3
  • 4
    • 0002617436 scopus 로고
    • Ferguson distributions via Polya urn schemes
    • Blackwell, D., and J. B. MacQueen, 1973 Ferguson distributions via Polya urn schemes. Ann. Stat. 1: 353-355.
    • (1973) Ann. Stat. , vol.1 , pp. 353-355
    • Blackwell, D.1    McQueen, J.B.2
  • 5
    • 62649155943 scopus 로고    scopus 로고
    • A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals
    • Browning, B. L., and S. R. Browning, 2009 A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. Am. J. Hum. Genet. 84: 210-223.
    • (2009) Am. J. Hum. Genet. , vol.84 , pp. 210-223
    • Browning, B.L.1    Browning, S.R.2
  • 6
    • 67149130298 scopus 로고    scopus 로고
    • Admixture mapping of 15,280 African Americans identifies obesity susceptibility loci on chromosomes 5 and X
    • Cheng, C.-Y., W. H. L. Kao, N. Patterson, A. Tandon, C. A. Haiman et al., 2009 Admixture mapping of 15,280 African Americans identifies obesity susceptibility loci on chromosomes 5 and X. PLoS Genet. 5: e1000490.
    • (2009) PLoS Genet. , vol.5
    • Cheng, C.-Y.1    Kao, W.H.L.2    Patterson, N.3    Tandon, A.4    Haiman, C.A.5
  • 7
    • 77952333622 scopus 로고    scopus 로고
    • Admixture mapping scans identify a locus affecting retinal vascular caliber in hypertensive African Americans: The Atherosclerosis Risk in Communities (ARIC) study
    • Cheng, C.-Y., D. Reich, T. Y. Wong, R. Klein, B. E. K. Klein et al., 2010 Admixture mapping scans identify a locus affecting retinal vascular caliber in hypertensive African Americans: the Atherosclerosis Risk in Communities (ARIC) study. PLoS Genet. 6: e1000908.
    • (2010) PLoS Genet. , vol.6
    • Cheng, C.-Y.1    Reich, D.2    Wong, T.Y.3    Klein, R.4    Klein, B.E.K.5
  • 8
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • Falush, D., M. Stephens, and J. K. Pritchard, 2003 Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 9
    • 0001120413 scopus 로고
    • A Bayesian analysis of some nonparametric problems
    • Ferguson, T. S., 1973 A Bayesian analysis of some nonparametric problems. Ann. Stat. 1: 209-230.
    • (1973) Ann. Stat. , vol.1 , pp. 209-230
    • Ferguson, T.S.1
  • 10
    • 34249066206 scopus 로고    scopus 로고
    • Inference of population structure under a Dirichlet process model
    • Huelsenbeck, J. P., and P. Andolfatto, 2007 Inference of population structure under a Dirichlet process model. Genetics 175: 1787-1802.
    • (2007) Genetics , vol.175 , pp. 1787-1802
    • Huelsenbeck, J.P.1    Andolfatto, P.2
  • 11
    • 39749197456 scopus 로고    scopus 로고
    • Genotype, haplotype and copy-number variation in worldwide human populations
    • Jakobsson, M., S. W. Scholz, P. Scheet, J. R. Gibbs, J. M. VanLiere et al., 2008 Genotype, haplotype and copy-number variation in worldwide human populations. Nature 451: 998-1003.
    • (2008) Nature , vol.451 , pp. 998-1003
    • Jakobsson, M.1    Scholz, S.W.2    Scheet, P.3    Gibbs, J.R.4    van Liere, J.M.5
  • 12
    • 71149118765 scopus 로고    scopus 로고
    • Genetic landscape of Eurasia and "admixture" in Uyghurs
    • author reply 937-939
    • Li, H., K. Cho, J. R. Kidd, and K. K. Kidd, 2009 Genetic landscape of Eurasia and "admixture" in Uyghurs. Am. J. Hum. Genet. 85: 934-937, author reply 937-939.
    • (2009) Am. J. Hum. Genet. , vol.85 , pp. 934-937
    • Li, H.1    Cho, K.2    Kidd, J.R.3    Kidd, K.K.4
  • 13
    • 78649508578 scopus 로고    scopus 로고
    • MaCH: Using sequence and genotype data to estimate haplotypes and unobserved genotypes
    • Li, Y., C. J. Willer, J. Ding, P. Scheet, and G. R. Abecasis, 2010 MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genet. Epidemiol. 34: 816-834.
    • (2010) Genet. Epidemiol. , vol.34 , pp. 816-834
    • Li, Y.1    Willer, C.J.2    Ding, J.3    Scheet, P.4    Abecasis, G.R.5
  • 14
    • 66349088624 scopus 로고    scopus 로고
    • Inference of locus-specific ancestry in closely related populations
    • Pasaniuc, B., S. Sankararaman, G. Kimmel, and E. Halperin, 2009 Inference of locus-specific ancestry in closely related populations. Bioinformatics 25: i213-i221.
    • (2009) Bioinformatics , vol.25
    • Pasaniuc, B.1    Sankararaman, S.2    Kimmel, G.3    Halperin, E.4
  • 16
  • 17
    • 33746512512 scopus 로고    scopus 로고
    • Principal components analysis corrects for stratification in genome-wide association studies
    • Price, A. L., N. J. Patterson, R. M. Plenge, M. E. Weinblatt, N.A. Shadick et al., 2006 Principal components analysis corrects for stratification in genome-wide association studies. Nat. Genet. 38: 904-909.
    • (2006) Nat. Genet. , vol.38 , pp. 904-909
    • Price, A.L.1    Patterson, N.J.2    Plenge, R.M.3    Weinblatt, M.E.4    Shadick, N.A.5
  • 19
    • 67651225410 scopus 로고    scopus 로고
    • Sensitive detection of chromosomal segments of distinct ancestry in admixed populations
    • Price, A. L., A. Tandon, N. Patterson, K. C. Barnes, N. Rafaels et al., 2009 Sensitive detection of chromosomal segments of distinct ancestry in admixed populations. PLoS Genet. 5: e1000519.
    • (2009) PLoS Genet. , vol.5
    • Price, A.L.1    Tandon, A.2    Patterson, N.3    Barnes, K.C.4    Rafaels, N.5
  • 20
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard, J. K., M. Stephens, and P. Donnelly, 2000 Inference of population structure using multilocus genotype data. Genetics 155: 945.
    • (2000) Genetics , vol.155 , pp. 945
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 23
    • 33644974019 scopus 로고    scopus 로고
    • A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase
    • Scheet, P., and M. Stephens, 2006 A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am. J. Hum. Genet. 78: 629-644.
    • (2006) Am. J. Hum. Genet. , vol.78 , pp. 629-644
    • Scheet, P.1    Stephens, M.2
  • 24
    • 34547830853 scopus 로고    scopus 로고
    • Spectrum: Joint Bayesian inference of population structure and recombination events
    • Sohn, K.-A., and E. P. Xing, 2007 Spectrum: joint Bayesian inference of population structure and recombination events. Bioinformatics 23: i479-i489.
    • (2007) Bioinformatics , vol.23
    • Sohn, K.-A.1    Xing, E.P.2
  • 25
    • 80053452636 scopus 로고    scopus 로고
    • A hierarchical Dirichlet process mixture model for haplotype reconstruction from multi-population data
    • Sohn, K.-A., and E. P. Xing, 2009 A hierarchical Dirichlet process mixture model for haplotype reconstruction from multi-population data. Ann. Appl. Stat. 3: 791-821.
    • (2009) Ann. Appl. Stat. , vol.3 , pp. 791-821
    • Sohn, K.-A.1    Xing, E.P.2
  • 26
    • 41649089607 scopus 로고    scopus 로고
    • Effect of genetic divergence in identifying ancestral origin using HAPAA
    • Sundquist, A., E. Fratkin, C. B. Do, and S. Batzoglou, 2008 Effect of genetic divergence in identifying ancestral origin using HAPAA. Genome Res. 18: 676-682.
    • (2008) Genome Res. , vol.18 , pp. 676-682
    • Sundquist, A.1    Fratkin, E.2    Do, C.B.3    Batzoglou, S.4
  • 27
    • 33745228973 scopus 로고    scopus 로고
    • Reconstructing genetic ancestry blocks in admixed individuals
    • Tang, H., M. Coram, P. Wang, X. Zhu, and N. Risch, 2006 Reconstructing genetic ancestry blocks in admixed individuals. Am. J. Hum. Genet. 79: 1-12.
    • (2006) Am. J. Hum. Genet. , vol.79 , pp. 1-12
    • Tang, H.1    Coram, M.2    Wang, P.3    Zhu, X.4    Risch, N.5
  • 31
    • 79951997040 scopus 로고    scopus 로고
    • Adjustment for local ancestry in genetic association analysis of admixed populations
    • Wang, X., X. Zhu, H. Qin, R. S. Cooper, W. J. Ewens et al., 2010 Adjustment for local ancestry in genetic association analysis of admixed populations. Bioinformatics 27: 670-677.
    • (2010) Bioinformatics , vol.27 , pp. 670-677
    • Wang, X.1    Zhu, X.2    Qin, H.3    Cooper, R.S.4    Ewens, W.J.5
  • 32
    • 51149090386 scopus 로고    scopus 로고
    • A genome-wide analysis of admixture in Uyghurs and a high-density admixture map for disease-gene discovery
    • Xu, S., and L. Jin, 2008 A genome-wide analysis of admixture in Uyghurs and a high-density admixture map for disease-gene discovery. Am. J. Hum. Genet. 83: 322-336.
    • (2008) Am. J. Hum. Genet. , vol.83 , pp. 322-336
    • Xu, S.1    Jin, L.2
  • 33
    • 41649083148 scopus 로고    scopus 로고
    • Analysis of genomic admixture in Uyghur and its implication in mapping strategy
    • Xu, S., W. Huang, J. Qian, and L. Jin, 2008 Analysis of genomic admixture in Uyghur and its implication in mapping strategy. Am. J. Hum. Genet. 82: 883-894.
    • (2008) Am. J. Hum. Genet. , vol.82 , pp. 883-894
    • Xu, S.1    Huang, W.2    Qian, J.3    Jin, L.4
  • 34
    • 79955989635 scopus 로고    scopus 로고
    • Combined admixture mapping and association analysis identifies a novel blood pressure genetic locus on 5p13: Contributions from the CARe consortium
    • Zhu, X., J. H. Young, E. Fox, B. J. Keating, N. Franceschini et al., 2011 Combined admixture mapping and association analysis identifies a novel blood pressure genetic locus on 5p13: contributions from the CARe consortium. Hum. Mol. Genet. 20: 2285-2295.
    • (2011) Hum. Mol. Genet. , vol.20 , pp. 2285-2295
    • Zhu, X.1    Young, J.H.2    Fox, E.3    Keating, B.J.4    Franceschini, N.5


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