-
1
-
-
32944464648
-
Pathogen recognition and innate immunity
-
Akira S, Uematsu S, Takeuchi O. 2006. Pathogen recognition and innate immunity. Cell 124:783-801.
-
(2006)
Cell
, vol.124
, pp. 783-801
-
-
Akira, S.1
Uematsu, S.2
Takeuchi, O.3
-
2
-
-
27644513772
-
Endocytosis of HIV-1 activates plasmacytoid dendritic cells via Toll-like receptor-viralRNAinteractions
-
Beignon AS, et al. 2005. Endocytosis of HIV-1 activates plasmacytoid dendritic cells via Toll-like receptor-viralRNAinteractions. J. Clin. Invest. 115:3265-3275.
-
(2005)
J. Clin. Invest.
, vol.115
, pp. 3265-3275
-
-
Beignon, A.S.1
-
3
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. Stat. Soc. B Methodol. 57:289-300.
-
(1995)
J. R. Stat. Soc. B Methodol.
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
4
-
-
84865101672
-
-
Montreal, Quebec, Canada
-
Blazejczk M, Miron M, Nadon R. 2007. Presented at the Genome, Montreal, Quebec, Canada.
-
(2007)
Presented at the Genome
-
-
Blazejczk, M.1
Miron, M.2
Nadon, R.3
-
5
-
-
9144248363
-
Gene expression profiling of host response in models of acute HIV infection
-
Bosinger SE, et al. 2004. Gene expression profiling of host response in models of acute HIV infection. J. Immunol. 173:6858-6863.
-
(2004)
J. Immunol.
, vol.173
, pp. 6858-6863
-
-
Bosinger, S.E.1
-
6
-
-
80052518621
-
Induction of innate immune responses by SIV in vivo and in vitro: differential expression and function of RIG-I and MDA5
-
Co JG, Witwer KW, Gama L, Zink MC, Clements JE. 2011. Induction of innate immune responses by SIV in vivo and in vitro: differential expression and function of RIG-I and MDA5. J. Infect. Dis. 204:1104-1114.
-
(2011)
J. Infect. Dis.
, vol.204
, pp. 1104-1114
-
-
Co, J.G.1
Witwer, K.W.2
Gama, L.3
Zink, M.C.4
Clements, J.E.5
-
7
-
-
0034977353
-
Functional classification of interferon-stimulated genes identified using microarrays
-
de Veer MJ, et al. 2001. Functional classification of interferon-stimulated genes identified using microarrays. J. Leukoc. Biol. 69:912-920.
-
(2001)
J. Leukoc. Biol
, vol.69
, pp. 912-920
-
-
de Veer, M.J.1
-
8
-
-
84865106370
-
-
Vpu mediates depletion of interferon regulatory factor 3 during HIV infection by a lysosome-dependent mechanism
-
Doehle BP, et al. 2012. Vpu mediates depletion of interferon regulatory factor 3 during HIV infection by a lysosome-dependent mechanism. J. Virol. 8367-8374.
-
(2012)
J. Virol.
, pp. 8367-8374
-
-
Doehle, B.P.1
-
9
-
-
84865098672
-
-
Sambhara S, Fujita T. (ed), Nucleic acid sensors and antiviral immunity. Landes Bioscience, Austin, TX
-
Doehle BP, Gale M, Jr. 2012. Innate immune evasion strategies of HCV and HIV: common themes for chronic viral infection. In Sambhara S, Fujita T. (ed), Nucleic acid sensors and antiviral immunity. Landes Bioscience, Austin, TX.
-
(2012)
Innate immune evasion strategies of HCV and HIV: common themes for chronic viral infection
-
-
Doehle, B.P.1
Gale Jr., M.2
-
10
-
-
70349748582
-
Human immunodeficiency virus type 1 mediates global disruption of innate antiviral signaling and immune defenses within infected cells
-
Doehle BP, Hladik F, McNevin JP, McElrath MJ, Gale M, Jr. 2009. Human immunodeficiency virus type 1 mediates global disruption of innate antiviral signaling and immune defenses within infected cells. J. Virol. 83:10395-10405.
-
(2009)
J. Virol.
, vol.83
, pp. 10395-10405
-
-
Doehle, B.P.1
Hladik, F.2
McNevin, J.P.3
McElrath, M.J.4
Gale Jr., M.5
-
11
-
-
79251480064
-
Abortive HIV infection mediates CD4 T cell depletion and inflammation in human lymphoid tissue.
-
Doitsh G, et al. 2010. Abortive HIV infection mediates CD4 T cell depletion and inflammation in human lymphoid tissue. Cell 143:789-801.
-
(2010)
Cell
, vol.143
, pp. 789-801
-
-
Doitsh, G.1
-
12
-
-
77954037568
-
The great escape: viral strategies to counter BST-2/tetherin
-
e1000913. doi:10.1371/journal.ppat
-
Douglas JL, et al. 2010. The great escape: viral strategies to counter BST-2/tetherin. PLoS Pathog. 6:e1000913. doi:10.1371/journal.ppat. 1000913.
-
(2010)
PLoS Pathog
, vol.6
, pp. 1000913
-
-
Douglas, J.L.1
-
13
-
-
67749095196
-
Vpu directs the degradation of the human immunodeficiency virus restriction factor BST-2/tetherin via a {beta}TrCPdependent mechanism
-
Douglas JL, et al. 2009. Vpu directs the degradation of the human immunodeficiency virus restriction factor BST-2/tetherin via a {beta}TrCPdependent mechanism. J. Virol. 83:7931-7947.
-
(2009)
J. Virol.
, vol.83
, pp. 7931-7947
-
-
Douglas, J.L.1
-
14
-
-
46249088370
-
lumi: a pipeline for processing Illumina microarray
-
Du P, Kibbe WA, Lin SM. 2008. lumi: a pipeline for processing Illumina microarray. Bioinformatics 24:1547-1548.
-
(2008)
Bioinformatics
, vol.24
, pp. 1547-1548
-
-
Du, P.1
Kibbe, W.A.2
Lin, S.M.3
-
15
-
-
42049089192
-
Statistical issues in the analysis of Illumina data
-
doi:10.1186/1471-2105-9-85
-
Dunning MJ, Barbosa-Morais NL, Lynch AG, Tavaré S, Ritchie ME. 2008. Statistical issues in the analysis of Illumina data. BMC Bioinformatics 9:85. doi:10.1186/1471-2105-9-85.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 85
-
-
Dunning, M.J.1
Barbosa-Morais, N.L.2
Lynch, A.G.3
Tavaré, S.4
Ritchie, M.E.5
-
16
-
-
23044469969
-
Interferon-induced exonuclease ISG20 exhibits an antiviral activity against human immunodeficiency virus type 1
-
Espert L, et al. 2005. Interferon-induced exonuclease ISG20 exhibits an antiviral activity against human immunodeficiency virus type 1. J. Gen. Virol. 86:2221-2229.
-
(2005)
J. Gen. Virol.
, vol.86
, pp. 2221-2229
-
-
Espert, L.1
-
17
-
-
0034606682
-
Large-scale monitoring of host cell gene expression during HIV-1 infection using cDNA microarrays
-
Geiss GK, et al. 2000. Large-scale monitoring of host cell gene expression during HIV-1 infection using cDNA microarrays. Virology 266:8-16.
-
(2000)
Virology
, vol.266
, pp. 8-16
-
-
Geiss, G.K.1
-
18
-
-
0036092049
-
Transcriptional profiling of interferon regulatory factor 3 target genes: direct involvement in the regulation of interferon-stimulated genes
-
Grandvaux N, et al. 2002. Transcriptional profiling of interferon regulatory factor 3 target genes: direct involvement in the regulation of interferon-stimulated genes. J. Virol. 76:5532-5539.
-
(2002)
J. Virol.
, vol.76
, pp. 5532-5539
-
-
Grandvaux, N.1
-
19
-
-
79957998255
-
HIV infection of dendritic cells subverts the IFN induction pathway via IRF-1 and inhibits type 1 IFN production
-
Harman AN, et al. 2011. HIV infection of dendritic cells subverts the IFN induction pathway via IRF-1 and inhibits type 1 IFN production. Blood 118:298-308.
-
(2011)
Blood
, vol.118
, pp. 298-308
-
-
Harman, A.N.1
-
20
-
-
0033032389
-
Dendritic cell-T-cell interactions support coreceptor-independent human immunodeficiency virus type 1 transmission in the human genital tract
-
Hladik F, et al. 1999. Dendritic cell-T-cell interactions support coreceptor-independent human immunodeficiency virus type 1 transmission in the human genital tract. J. Virol. 73:5833-5842.
-
(1999)
J. Virol.
, vol.73
, pp. 5833-5842
-
-
Hladik, F.1
-
21
-
-
0033567102
-
Coexpression of CCR5 and IL-2 in human genital but not blood T cells: implications for the ontogeny of the CCR5() Th1 phenotype
-
Hladik F, Lentz G, Delpit E, McElroy A, McElrath MJ. 1999. Coexpression of CCR5 and IL-2 in human genital but not blood T cells: implications for the ontogeny of the CCR5() Th1 phenotype. J. Immunol. 163: 2306-2313.
-
(1999)
J. Immunol.
, vol.163
, pp. 2306-2313
-
-
Hladik, F.1
Lentz, G.2
Delpit, E.3
McElroy, A.4
McElrath, M.J.5
-
22
-
-
17144404177
-
IRF-7 is the master regulator of type-I interferondependent immune responses
-
Honda K, et al. 2005. IRF-7 is the master regulator of type-I interferondependent immune responses. Nature 434:772-777.
-
(2005)
Nature
, vol.434
, pp. 772-777
-
-
Honda, K.1
-
23
-
-
71749086904
-
HIV-1 accessory protein Vpu internalizes cellsurface BST-2/tetherin through transmembrane interactions leading to lysosomes
-
Iwabu Y, et al. 2009. HIV-1 accessory protein Vpu internalizes cellsurface BST-2/tetherin through transmembrane interactions leading to lysosomes. J. Biol. Chem. 284:35060-35072.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 35060-35072
-
-
Iwabu, Y.1
-
24
-
-
77951260924
-
The role of pattern-recognition receptors in innate immunity: update on Toll-like receptors
-
Kawai T, Akira S. 2010. The role of pattern-recognition receptors in innate immunity: update on Toll-like receptors. Nat. Immunol. 11:373-384.
-
(2010)
Nat. Immunol.
, vol.11
, pp. 373-384
-
-
Kawai, T.1
Akira, S.2
-
25
-
-
77958182786
-
Immune evasion and counteraction of restriction factors by HIV-1 and other primate lentiviruses.
-
Kirchhoff F. 2010. Immune evasion and counteraction of restriction factors by HIV-1 and other primate lentiviruses. Cell Host Microbe 8:55-67.
-
(2010)
Cell Host Microbe
, vol.8
, pp. 55-67
-
-
Kirchhoff, F.1
-
26
-
-
39149111937
-
Model-based variancestabilizing transformation for Illumina microarray data
-
Lin SM, Du P, Huber W, Kibbe WA. 2008. Model-based variancestabilizing transformation for Illumina microarray data. Nucleic Acids Res. 36:e11.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 11
-
-
Lin, S.M.1
Du, P.2
Huber, W.3
Kibbe, W.A.4
-
27
-
-
0035827588
-
Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framewor Analysis of global gene expression in Escherichia coli K12
-
Long AD, et al. 2001. Improved statistical inference from DNA microarray data using analysis of variance and a Bayesian statistical framework. Analysis of global gene expression in Escherichia coli K12. J. Biol. Chem. 276:19937-19944.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 19937-19944
-
-
Long, A.D.1
-
28
-
-
37349052379
-
Distinct RIG-I and MDA5 signaling by RNA viruses in innate immunity
-
Loo YM, et al. 2008. Distinct RIG-I and MDA5 signaling by RNA viruses in innate immunity. J. Virol. 82:335-345.
-
(2008)
J. Virol
, vol.82
, pp. 335-345
-
-
Loo, Y.M.1
-
29
-
-
38449099395
-
Viral regulation and evasion of the host response
-
Loo YM, Gale M, Jr. 2007. Viral regulation and evasion of the host response. Curr. Top. Microbiol. Immunol. 316:295-313.
-
(2007)
Curr. Top. Microbiol. Immunol.
, vol.316
, pp. 295-313
-
-
Loo, Y.M.1
Gale Jr., M.2
-
31
-
-
53549103852
-
Divergent TLR7 and TLR9 signaling and type I interferon production distinguish pathogenic and nonpathogenic AIDS virus infections
-
Mandl JN, et al. 2008. Divergent TLR7 and TLR9 signaling and type I interferon production distinguish pathogenic and nonpathogenic AIDS virus infections. Nat. Med. 14:1077-1087.
-
(2008)
Nat. Med
, vol.14
, pp. 1077-1087
-
-
Mandl, J.N.1
-
32
-
-
77956497003
-
A cryptic sensor for HIV-1 activates antiviral innate immunity in dendritic cells
-
Manel N, et al. 2010. A cryptic sensor for HIV-1 activates antiviral innate immunity in dendritic cells. Nature 467:214-217.
-
(2010)
Nature
, vol.467
, pp. 214-217
-
-
Manel, N.1
-
33
-
-
0032012456
-
A novel human WD protein, h-beta TrCp, that interacts with HIV-1 Vpu connects CD4 to the ER degradation pathway through an F-box motif
-
Margottin F, et al. 1998. A novel human WD protein, h-beta TrCp, that interacts with HIV-1 Vpu connects CD4 to the ER degradation pathway through an F-box motif. Mol. Cell 1:565-574.
-
(1998)
Mol. Cell
, vol.1
, pp. 565-574
-
-
Margottin, F.1
-
34
-
-
34547130280
-
MyD88-dependent immune activation mediated by human immunodeficiency virus type 1-encoded Toll-like receptor ligands
-
Meier A, et al. 2007. MyD88-dependent immune activation mediated by human immunodeficiency virus type 1-encoded Toll-like receptor ligands. J. Virol. 81:8180-8191.
-
(2007)
J. Virol.
, vol.81
, pp. 8180-8191
-
-
Meier, A.1
-
35
-
-
67249157032
-
Vpu antagonizes BST-2-mediated restriction of HIV-1 release via beta-TrCP and endo-lysosomal trafficking.
-
doi:10.1371/journal.ppat.1000450
-
Mitchell RS, et al. 2009. Vpu antagonizes BST-2-mediated restriction of HIV-1 release via beta-TrCP and endo-lysosomal trafficking. PLoS Pathog. 5:e1000450. doi:10.1371/journal.ppat.1000450.
-
(2009)
PLoS Pathog
, vol.5
, pp. 1000450
-
-
Mitchell, R.S.1
-
36
-
-
70349235715
-
Human immunodeficiency virus, restriction factors, and interferon
-
Neil S, Bieniasz P. 2009. Human immunodeficiency virus, restriction factors, and interferon. J. Interferon Cytokine Res. 29:569-580.
-
(2009)
J. Interferon Cytokine Res.
, vol.29
, pp. 569-580
-
-
Neil, S.1
Bieniasz, P.2
-
37
-
-
20444414855
-
Functional genomic relationships in HIV-1 disease revealed by gene-expression profiling of primary human peripheral blood mononuclear cells
-
Ockenhouse CF, Bernstein WB, Wang ZN, Vahey MT. 2005. Functional genomic relationships in HIV-1 disease revealed by gene-expression profiling of primary human peripheral blood mononuclear cells. J. Infect. Dis. 191:2064-2074.
-
(2005)
J. Infect. Dis.
, vol.191
, pp. 2064-2074
-
-
Ockenhouse, C.F.1
Bernstein, W.B.2
Wang, Z.N.3
Vahey, M.T.4
-
38
-
-
40649114040
-
HIV-1 accessory proteins VPR and Vif modulate antiviral response by targeting IRF-3 for degradation
-
Okumura A, et al. 2008. HIV-1 accessory proteins VPR and Vif modulate antiviral response by targeting IRF-3 for degradation. Virology 373:85-97.
-
(2008)
Virology
, vol.373
, pp. 85-97
-
-
Okumura, A.1
-
39
-
-
31944435603
-
Innate antiviral response targets HIV-1 release by the induction of ubiquitin-like protein ISG15
-
Okumura A, Lu GS, Pitha-Rowe I, Pitha PM. 2006. Innate antiviral response targets HIV-1 release by the induction of ubiquitin-like protein ISG15. Proc. Natl. Acad. Sci. U. S. A. 103:1440-1445.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 1440-1445
-
-
Okumura, A.1
Lu, G.S.2
Pitha-Rowe, I.3
Pitha, P.M.4
-
40
-
-
16644366474
-
Toll-like receptors: linking innate and adaptive immunity
-
Pasare C, Medzhitov R. 2004. Toll-like receptors: linking innate and adaptive immunity. Microbes Infect. 6:1382-1387.
-
(2004)
Microbes Infect
, vol.6
, pp. 1382-1387
-
-
Pasare, C.1
Medzhitov, R.2
-
41
-
-
79955377543
-
TRIM5 is an innate immune sensor for the retrovirus capsid lattice
-
Pertel T, et al. 2011. TRIM5 is an innate immune sensor for the retrovirus capsid lattice. Nature 472:361-365.
-
(2011)
Nature
, vol.472
, pp. 361-365
-
-
Pertel, T.1
-
42
-
-
35048874631
-
Effects of Vpu start-codon mutations on human immunodeficiency virus type 1 replication in macrophages
-
Richards KH, Clapham PR. 2007. Effects of Vpu start-codon mutations on human immunodeficiency virus type 1 replication in macrophages. J. Gen. Virol. 88:2780-2792.
-
(2007)
J. Gen. Virol.
, vol.88
, pp. 2780-2792
-
-
Richards, K.H.1
Clapham, P.R.2
-
43
-
-
33749129426
-
TLR3 ligation activates an antiviral response in human fetal astrocytes: a role for viperin/cig5
-
Rivieccio MA, et al. 2006. TLR3 ligation activates an antiviral response in human fetal astrocytes: a role for viperin/cig5. J. Immunol. 177:4735-4741.
-
(2006)
J. Immunol.
, vol.177
, pp. 4735-4741
-
-
Rivieccio, M.A.1
-
45
-
-
33747894577
-
TM4 microarray software suite
-
Saeed AI, et al. 2006. TM4 microarray software suite. Methods Enzymol. 411:134-193.
-
(2006)
Methods Enzymol
, vol.411
, pp. 134-193
-
-
Saeed, A.I.1
-
46
-
-
0037311919
-
TM4: a free, open-source system for microarray data management and analysis
-
Saeed AI, et al. 2003. TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34:374-378.
-
(2003)
Biotechniques 34
, pp. 374-378
-
-
Saeed, A.I.1
-
47
-
-
47949092573
-
Innate immunity induced by composition-dependent RIG-I recognition of hepatitis C virus RNA
-
Saito T, Owen DM, Jiang FG, Marcotrigiano J, Gale M. 2008. Innate immunity induced by composition-dependent RIG-I recognition of hepatitis C virus RNA. Nature 454:523-527.
-
(2008)
Nature
, vol.454
, pp. 523-527
-
-
Saito, T.1
Owen, D.M.2
Jiang, F.G.3
Marcotrigiano, J.4
Gale, M.5
-
48
-
-
33746401425
-
Increased expression of interferon-inducible genes in macaque lung tissues during simian immunodeficiency virus infection
-
Schaefer TM, et al. 2006. Increased expression of interferon-inducible genes in macaque lung tissues during simian immunodeficiency virus infection. Microbes Infect. 8:1839-1850.
-
(2006)
Microbes Infect
, vol.8
, pp. 1839-1850
-
-
Schaefer, T.M.1
-
49
-
-
78651401005
-
RIG-I-mediated antiviral signaling is inhibited in HIV-1 infection by a protease-mediated sequestration of RIG-I
-
Solis M, et al. 2011. RIG-I-mediated antiviral signaling is inhibited in HIV-1 infection by a protease-mediated sequestration of RIG-I. J. Virol. 85:1224-1236.
-
(2011)
J. Virol.
, vol.85
, pp. 1224-1236
-
-
Solis, M.1
-
50
-
-
33748455338
-
Type I interferons in host defense
-
Stetson DB, Medzhitov R. 2006. Type I interferons in host defense. Immunity 25:373-381.
-
(2006)
0Immunity
, vol.25
, pp. 373-381
-
-
Stetson, D.B.1
Medzhitov, R.2
-
51
-
-
77649241997
-
IPS-1 is essential for the control of West Nile virus infection and immunity
-
doi:10.1371/ journal.ppat.1000757
-
Suthar MS, et al. 2010. IPS-1 is essential for the control of West Nile virus infection and immunity. PLoS Pathog. 6:e1000757. doi:10.1371/ journal.ppat.1000757.
-
(2010)
PLoS Pathog
, vol.6
, pp. 1000757
-
-
Suthar, M.S.1
-
52
-
-
77249132637
-
Recognition of viruses by cytoplasmic sensors
-
Wilkins C, Gale M, Jr. 2010. Recognition of viruses by cytoplasmic sensors. Curr. Opin. Immunol. 22:41-47.
-
(2010)
Curr. Opin. Immunol.
, vol.22
, pp. 41-47
-
-
Wilkins, C.1
Gale Jr., M.2
-
53
-
-
9344250534
-
Interferon gene expression following HIV type 1 infection of monocyte-derived macrophages
-
Woelk CH, et al. 2004. Interferon gene expression following HIV type 1 infection of monocyte-derived macrophages. AIDS Res. Hum. Retroviruses 20:1210-1222.
-
(2004)
AIDS Res. Hum. Retroviruses
, vol.20
, pp. 1210-1222
-
-
Woelk, C.H.1
-
54
-
-
77958114725
-
The cytosolic exonuclease TREX1 inhibits the innate immune response to human immunodeficiency virus type 1
-
Yan N, Regalado-Magdos AD, Stiggelbout B, Lee-Kirsch MA, Lieberman J. 2010. The cytosolic exonuclease TREX1 inhibits the innate immune response to human immunodeficiency virus type 1. Nat. Immunol. 11:1005-1013.
-
(2010)
Nat. Immunol.
, vol.11
, pp. 1005-1013
-
-
Yan, N.1
Regalado-Magdos, A.D.2
Stiggelbout, B.3
Lee-Kirsch, M.A.4
Lieberman, J.5
|