An ecosystem model for optimising production in integrated multitrophic aquaculture systems

Ecological Modelling

Volumn 246, Issue C, 2012, Pages 34-46

  Ren, Jeffrey S ^a   Stenton Dozey, Jeanie ^a   Plew, David R ^a   Fang, Jianguang ^b   Gall, Mark ^a  

^a NATIONAL INSTITUTE OF WATER AND ATMOSPHERIC RESEARCH   (New Zealand)

^b YELLOW SEA FISHERIES RESEARCH INSTITUTE   (China)

Author keywords

Biomitigation; Dynamic energy budget; Integrated multitrophic aquaculture model; Productivity

Indexed keywords

AQUACULTURE SYSTEMS; BIOMITIGATION; CO-CULTURES; COCULTURE; DYNAMIC ENERGY BUDGETS; ECONOMIC RETURNS; ECOSYSTEM MODEL; FOOD RESOURCES; LOCAL ENVIRONMENTS; MODEL SIMULATION; MULTI-SPECIES; MULTIPLE TROPHIC LEVELS; NATURAL VARIABILITY; OPTIMAL STOCKING; OPTIMISATIONS; PRODUCT DIVERSIFICATION; RESEARCH TOOLS; SCENARIO SIMULATIONS; SEA CUCUMBER; SPECIES INTERACTIONS; TROPHIC GROUP; TROPHIC LEVEL; WASTE PRODUCTS;

AQUACULTURE; BUDGET CONTROL; ECOSYSTEMS; OPTIMIZATION; PRODUCTIVITY; PROFITABILITY; SEAWEED; SHELLFISH;

COMPUTER SIMULATION;

AQUACULTURE PRODUCTION; AQUACULTURE SYSTEM; BIVALVE; DATA SET; DETRITIVORY; ECHINODERM; ECOLOGICAL MODELING; ECOPHYSIOLOGY; ECOSYSTEM MODELING; ENERGY BUDGET; FEASIBILITY STUDY; FINFISH; INTEGRATED APPROACH; OPTIMIZATION; PRODUCTIVITY; PROFITABILITY; RECYCLING; SEAWEED; SHELLFISH; STOCKING DENSITY; TROPHIC LEVEL;

HOLOTHUROIDEA;

EID: 84864956452     PISSN: 03043800     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ecolmodel.2012.07.020     Document Type: Article

References (73)

1. Alfaro, A.C., 2001. Ecological dynamics of the greenshell-lipped mussel, Perna canaliculus, at Ninety Mile Beach, Northern New Zealand. Ph.D. Thesis. Univ Auckland, New Zealand.
2. Amundsen P.A., Bergersen R., Huru H., Heggberget T.G. Diel feeding rhythms and daily food consumption of juvenile Atlantic salmon in the River Alta, northern Norway. Journal of Fish Biology 1999, 54:58-71.
3. Andersen V., Nival P. Modelling of planktonic ecosystem in an enclosed water column. Journal of the Marine Biological Association of the United Kingdom 1987, 67:407-430.
4. Angel D., Freeman S. Integrated aquaculture (INTAQ) as a tool for an ecosystem approach in the Mediterranean Sea. Integrated Mariculture: A Global Review 2009, 133-183. FAO Fisheries and Aquaculture Technical Paper 529, Rome. D. Soto (Ed.).
5. Bacher C., Duarte P., Ferreira J.G., Héral M., Raillard O. Assessment and comparison of Marennes-Oléron Bay (France) and Carlingford Lough (Ireland) carrying capacity with ecosystem models. Aquatic Ecology 1998, 31:379-394.
6. Barrington K., Chopin T., Robinson S. Integrated multi-trophic aquaculture (IMTA) in marine temperate waters. Integrated Mariculture: A Global Review 2009, 7-46. FAO Fisheries and Aquaculture Technical Paper 529, Rome. D. Soto (Ed.).
7. Beauchamp D.A., Cross A.D., Armstrong J.L., Myers K.W., Moss J.H., Boldt J.L., Haldorson L.J. Bioenergetic responses by Pacific salmon to climate and ecosystem variation. North Pacific Anadromous Fish Commission Bulletin 2007, 4:257-269.
8. Bienfang P.K. A new phytoplankton sinking rate method suitable for field use. Deep-Sea Research I 1977, 26:719-729.
9. Buschmann A.H., Riquelme V.A., Hernández-González M., Varela D., Jiménez J.E., Henríquez L.A., Vergara P.A., Guíñez R., Filún a.L. A review of the impacts of salmonid farming on marine coastal ecosystems in the southeast Pacific. Journal of Marine Science 2006, 63:1338-1345.
10. Buschmann A.H., Varela D.A., Hernández-González M.C., Huovinen P. Opportunities and challenges for the development of an integrated seaweed-based aquaculture activity in Chile: Determining the physiological capabilities of Macrocystis and Gracilaria as biofilters. Journal of Applied Phycology 2008, 20:571-577.
11. Caperon J., Meyer J. Nutogeon limited growth of marine phytoplankton. II. Uptake kinetics and their role in nutrient limited growth of phytoplankton. Deep-Sea Research 1972, 19:619-632.
12. Chapelle A., Lazure P., Ménesguen A. Modelling eutrophication events in a coastal ecosystem. Sensitivity analysis. Estuarine and Coastal Marine Science 1994, 39:529-548.
13. Chapelle A. A preliminary model of nutrient cycling in sediments of a Mediterranean lagoon. Ecological Modelling 1995, 80:131-147.
14. Chopin T., Robinson S.M.C., Troell M., Neori A., Fang J. Multitrophic integration for sustainable marine aquaculture. The Encyclopedia of Ecology, Ecological Engineering 2008, vol. 3:2463-2475. Elsevier, Oxford.
15. Chopin T., Robinson S., Sawhney M., Bastarache S., Belyea E., Shea R., Armstrong R., Stewart I., Fitzgerald P. The AquaNet integrated multi-trophic aquaculture project: rationale of the project and development of kelp cultivation as the in organic extractive component of the system. Proceedings of the Integrated Multi-Trophic Aquaculture Workshop 2004, 11.
16. Corkett C.J., Maclaren I.A. The biology of Pseudocalanus. Advances in Marine Biology 1979, 15:2-231.
17. Devola A.H., Uhlenhopp A.G., Naqvi S.W.A., Brandes J.A., Jayakumar D.A., Naik H., Gaurin S., Codispoti L.A., Yoshinari T. Denitrification rates and excess nitrogen gas concentrations in the Arabian Sea oxygen deficient zone. Deep-Sea Research I 2006, 53:1533-1547.
18. Dowd M. A bio-physical coastal ecosystem model for assessing environmental effects of marine bivalve aquaculture. Ecological Modelling 2005, 183:323-346.
19. Duarte P., Ferreira J.G. A methodology for parameter estimation in seaweed productivity modelling. Hydrobiologia 1993, 260-261:183-189.
20. Duarte P., Meneses R., Hawkins A.J.S., Zhu M., Fang J., Grant J. Mathematical modelling to assess the carrying capacity for multi-species culture within coastal waters. Ecological Modelling 2003, 168:109-143.
21. Dutkiewicz S., Follows M., Marshall J., Gregg W.W. Interannual variability of phytoplankton abundances in the North Atlantic. Deep-Sea Research II 2001, 48:2323-2344.
22. Edwards A., Grantham B.E. Inorganic nutrient regeneration in Loch Etive bottom water. The Role of Freshwater Outflow in Coastal Marine Ecosystems 1986, 195-204. Springer-Verlag, Berlin. S. Skreslet (Ed.).
23. Finstad A.G., Ugedal O., Forseth T., Næsje T.F. Energy-related juvenile winter mortality in a northern population of Atlantic salmon (Salmo salar). Canadian Journal of Fisheries and Aquatic Sciences 2004, 61:2358-2368.
24. Fralick R.A., Baldwin H.P., Neto A.I., Hehre E.J. Physiological responses of Pterocladia and Gelidium (Gelidiales Rhodophyta) from the Azores. Portugal Hydrobiologia 1990, 204-205:479-482.
25. Fransz H.G., Mommaerts J.-P., Radach G. Ecological modelling of the North Sea. Netherlands Journal of Sea Research 1991, 28:67-140.
26. Gibbs M.M., Vant W.N. Seasonal change in factors controlling phytoplankton growth in Beatrix Bay, New Zealand. New Zealand Journal of Marine and Freshwater Research 1997, 31:237-248.
27. Goldman J.C. Temperature effects on phytoplankton growth in continuous culture. Limnology and Oceanography 1977, 932-935.
28. Grangeré K., Lefebvre S., Bacher C., Cugier P., Ménesguen A. Modelling the spatial heterogeneity of ecological processes in an intertidal estuarine bay: dynamic interactions between bivalves and phytoplankton. Marine Ecology Progress Series 2010, 415:141-158.
29. Grant J., Curran K.J., Guyondet T.L., Tita G., Bacher C., Koutitonsky V., Dowd M. A box model of carrying capacity for suspended mussel aquaculture in Lagune de la Grande-Entrée. Iles-de-la-Madeleine, Québec. Ecological Modelling 2007, 200:193-206.
30. Graynoth E. Spawning migrations and reproduction of landlocked sockeye salmon (Oncorhynchus nerka) in the Waitaki catchment, New Zealand. New Zealand Journal of Marine & Freshwater Research 1995, 29:257-269.
31. Hatcher J., Grant J., Schofield B. Effects of suspended mussel culture (Mytilus spp.) on sedimentation benthic respiration and sediment nutrient dynamics in a coastal bay. Marine Ecology Progress Series 1994, 115:219-235.
32. Hawkins A.J.S., James M.R., Hickman R.W., Hatton S., Weatherhead M. Modelling of suspension-feeding and growth in the green-lipped mussel Perna canaliculus exposed to natural and experimental variations of seston availability in the Marlbourough Sounds, New Zealand. Marine Ecology Progress Series 1999, 191:217-232.
33. Hickman R.W. Allometry and growth of the green-lipped mussel Perna canaliculus in New Zealand. Marine Biology 1979, 51:311-327.
34. Hughes A.D., Kelly, M.S., 2011. Integrated Multi-Trophic Aquaculture. Scottish Association of Marine Science, 15 p. http://www.sarf.org.uk/cms-assets/documents/28926-823833.current-state-of-integrated-aquaculture.
35. Kiefer D.A. A reply to the comment by Bannister. Limnology and Oceanography 1990, 35:980-982.
36. Kiørboe T., Møhlenberg F., Hamburger K. Bioenergetics of the copepod Acartia tonsa: relation between feeding, egg production and respiration, and composition of specific dynamic action. Marine Ecology Progress Series 1985, 26:85-97.
37. Kleiber M. The Fire of Life: An Introduction to Animal Energetics 1961, Wiley, New York.
38. Kooijman S.A.L.M. Dynamic Energy and Mass Budgets in Biological Systems 2000, Cambridge University Press, Cambridge.
39. Li S., Zhang G., Wang B. Coculture of kelp (Laminaria haponicus Aresch) and scallop (Chlamys farreri Jones et Preston). Transactions of Oceanology and Limnology 1983, 4:70-75.
40. Madenjian C.P., O'Connor D.V., Chernyak S.M., Rediske R.R., O'Keefe J.P. Evaluation of a chinook salmon (Oncorhynchus tshawytscha) bioenergetics model. Canadian Bulletin of Fisheries and Aquatic Sciences 2004, 61:627-635.
41. Mao X., Zhu M., Yang X. The photosynthesis and productivity of benthic macrophytes in Sanggou Bay. Acta Ecologica Sinica. 1993, 13:25-29.
42. Marsden I.D., Weatherhead M.A. Short-level induced variations in condition and feeding of the mussel Perna canaliculus from the east coast of the South Island, New Zealand. New Zealand Journal of Marine and Freshwater Research 1999, 33:611-622.
43. Møller L.F., Riisgård H.U. Respiration in the scyphozoan jellyfish Aurelia aurita and two hydromedusae (Sarsia tubulosa and Aequorea vitrina): effect of size, temperature and growth. Marine Ecology Progress Series 2007, 330:149-154.
44. Munch S.B., Conover D.O. Accounting for local physiological adaptation in bioenergetic models: testing hypotheses for growth rate evolution by virtual transplant experiments. Canadian Journal of Fisheries and Aquatic Sciences 2002, 59:393-403.
45. NACA Integrated Fish Farming in China. FAO NACA Technical Manual 7 1989, A World Food Day Publication of the Network of Aquaculture Centres in Asia and the Pacific, Bangkok, Thailand, 278 pp.
46. Nakata K., Horiguchi F., Yamamuro M. Model study of Lake Shinji and Nakaumi - a coupled coastal lagoon system. Journal of Marine Systems 2000, 26:145-169.
47. Neori A., Chopin T., Troell M., Buschmann A.H., Kraemer G.P., Halling C., Shpigel M., Yarish C. Integrated aquaculture: rationale, evolution and state of the art emphasizing seaweed biofiltration in modern mariculture. Aquaculture 2004, 231:361-391.
48. Piedecausa M.A., Aguado-Giménez F., García-García B., Ballester G., Telfer T. Settling velocity and total ammonia nitrogen leaching from commercial feed and faecal pellets of gilthead seabream (Sparus aurata L. 1758) and seabass (Dicentrarchus labrax L. 1758). Aquaculture Research 2009, 40:1703-1714.
49. Plew D.R. Shellfish farm-induced changes to tidal circulation in an embayment and implications for seston depletion. Aquaculture Environment Interactions 2011, 1:201-214.
50. Pouvreau S., Bourles Y., Lefebvre S., Gangnery A., Alunno-Bruscia M. Application of a dynamic energy budget model to the Pacific oyster, Crassostrea gigas, reared under various environmental conditions. Journal of Sea Research 2006, 56:156-167.
51. 15N tracer procedures. Marine Ecology Progress Series 1997, 153:99-111.
52. Reeve M.R. Comparative experimental studies on the feeding of chaetognaths and ctenophores. Journal of Plankton Research 1980, 2:381-393.
53. Reid G.K., Liutkus M., Robinson S.M.C., Chopin T.R., Blair T., Lander T., Mullen J., Page F., Moccia R.D. A review of the biophysical properties of salmonid faeces: implications for aquaculture waste dispersal models and integrated multi-trophic aquaculture. Aquaculture and Research 2009, 40:257-273.
54. Ren J.S., Ross A.H. Environmental influence on mussel growth: A dynamic energy budget model and its application to the greenshell mussel Perna canaliculus. Ecological Modelling 2005, 189:347-362.
55. Ren J.S., Ross A.H., Hadfield M.G., Hayden B.J. An ecosystem model for estimating potential shellfish culture production in sheltered coastal waters. Ecological Modelling 2010, 221:527-539.
56. Ross A.H., Gurney W.S.C., Heath M.R., Hay S.J., Henderson E.W. A strategic simulation model of a fjord ecosystem. Limnology and Oceanography 1993, 38:128-153.
57. Smaal A.C., Vonck A.P.M.A. Seasonal variation in C, N and P budgets and tissue composition of the mussel Mytilus edulis. Marine Ecology Progress Series 1997, 153:167-179.
58. Soto D. Integrated Mariculture: A Global Review 2009, FAO Fisheries and Aquaculture Technical Paper 529, Rome, 183 pp.
59. Soto D., Jara F. Using natural ecosystem services to diminish salmon-farming footprints in Southern Chile. Ecological and Genetic Implications of Aquaculture Activities 2007, 459-475. Springer, Netherlands. T.M. Bert (Ed.).
60. Stead S.M., Houlihan D.F., McLay H.A., Johnstone R. Food consumption and growth in maturing Atlantic salmon (Salmo salar). Canadian Journal of Fisheries and Aquatic Sciences 1999, 56:2019-2028.
61. Stevens E.D., Sutterlin A., Cook T. Respiratory metabolism and swimming performance in growth hormone transgenic Atlantic salmon. Canadian Journal of Fisheries and Aquatic Sciences 1998, 55:2028-2035.
62. Stewart D.J., Ibarra M. Predation and production by salmonine fishes in Lake Michigan 1978-88. Canadian Journal of Fisheries and Aquatic Sciences 1991, 48:902-922.
63. Taylor M.W., Rees T.A.V. Kinetics of ammonium assimilation in two seaweeds Enteromorpha sp. (chlorophyceae) and Osmundaria colensoi (rhodophyceae). Marine Ecology Progress Series 1999, 35:740-764.
64. Tett P., Droop M.R. Cell quota models and planktonic primary production. Handbook of Laboratory Model Systems for Microbial Ecosystems 1988, vol. 2:77-233. CRC Press, Boca Raton.
65. Tyler, I.D., 1983. A carbon budget for Creran a Scottish sea-loch. Ph.D. Thesis. Univ Strathclyde.
66. van der Veer H.W., Cardoso J.F.M.F., van der Meer J. The estimation of DEB parameters for various North Atlantic bivalve species. Journal of Sea Research 2006, 56:107-124.
67. van der Meer J. An introduction to dynamic energy budget (DEB) models with species emphasis on parameter estimation. Journal of Sea Research 2006, 56:85-102.
68. Wang D. Development and application of shellfish aquaculture technology. Journal of Oceanography of Huanghai and Bohai Seas 2001, 19:78-81.
69. Widmer C.L. Effects of temperature on growth of north-east Pacific moon jellyfish ephyrae, Aurelia labiata (Cnidaria: Scyphozoa). Journal of the Marine Biological Association of the United Kingdom 2005, 85:569-573.
70. Yang H., Wang J., Zhou Y., Zhang T., Wang P., He Y., Zhang F. Comparison of efficiencies of different culture systems in the shallow sea along Yantai. Journal of Fishery Sciences of China 2000, 24:140-145.
71. Yang H., Yuan X., Zhou Y., Mao Y., Zhang T., Liu Y. Effects of body size and water temperature on food consumption and growth in the sea cucumber Apostichopus japonicus (Selenka) with special reference to aestivation. Aquaculture Research 2005, 36:1085-1092.
72. Yurista P.M. A model for temperature correction of size-specific respiration in Bythotrephes cederstroemi and Daphnia middendorffiana. Journal of Plankton Research 1999, 21:721-734.
73. Zlotnik I., Dubinsky Z. The effect of light and temperature on DOC excretion by phytoplankton. Limnology and Oceanography 1989, 34:831-839.