메뉴 건너뛰기




Volumn 30, Issue 8, 2012, Pages 798-802

Associative transcriptomics of traits in the polyploid crop species Brassica napus

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS THALIANA; BRASSICA NAPUS; GENE SEQUENCES; GENOME SEQUENCES; GENOMIC DELETIONS; GLUCOSINOLATE CONTENTS; GLUCOSINOLATES; MARKER-ASSISTED SELECTION; MOLECULAR MARKER; ORTHOLOGS; QUANTITATIVE TRAIT LOCUS; TRANSCRIPTOMES; TRANSCRIPTOMICS;

EID: 84864883992     PISSN: 10870156     EISSN: 15461696     Source Type: Journal    
DOI: 10.1038/nbt.2302     Document Type: Article
Times cited : (259)

References (35)
  • 1
    • 33747457749 scopus 로고    scopus 로고
    • Reconstructing human origins in the genomic era
    • Garrigan, D. & Hammer, M.F. Reconstructing human origins in the genomic era. Nat. Rev. Genet. 7, 669-680 (2006).
    • (2006) Nat. Rev. Genet. , vol.7 , pp. 669-680
    • Garrigan, D.1    Hammer, M.F.2
  • 2
    • 39749181521 scopus 로고    scopus 로고
    • Worldwide human relationships inferred from genome-wide patterns of variation
    • Li, J.Z., Absher, D.M., Tang, H., Southwick, A.M. & Casto, A.M. Worldwide human relationships inferred from genome-wide patterns of variation. Science 319, 1100-1104 (2008).
    • (2008) Science , vol.319 , pp. 1100-1104
    • Li, J.Z.1    Absher, D.M.2    Tang, H.3    Southwick, A.M.4    Casto, A.M.5
  • 3
    • 79251561130 scopus 로고    scopus 로고
    • Genome-wide association study of leaf architecture in the maize nested association mapping population
    • Tian, F. et al. Genome-wide association study of leaf architecture in the maize nested association mapping population. Nat. Genet. 43, 159-162 (2011).
    • (2011) Nat. Genet. , vol.43 , pp. 159-162
    • Tian, F.1
  • 4
    • 80053388300 scopus 로고    scopus 로고
    • Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa
    • Zhao, K. et al. Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa. Nat. Commun. 2, 467 (2011).
    • (2011) Nat. Commun. , vol.2 , pp. 467
    • Zhao, K.1
  • 5
    • 77953233453 scopus 로고    scopus 로고
    • Genome-wide association study of 107 phenotypes in a common set of Arabidopsis thaliana inbred lines
    • Atwell, S. et al. Genome-wide association study of 107 phenotypes in a common set of Arabidopsis thaliana inbred lines. Nature 465, 627-631 (2010).
    • (2010) Nature , vol.465 , pp. 627-631
    • Atwell, S.1
  • 6
    • 78650727753 scopus 로고    scopus 로고
    • Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome
    • Cockram, J. et al. Genome-wide association mapping to candidate polymorphism resolution in the unsequenced barley genome. Proc. Natl. Acad. Sci. USA 107, 21611-21616 (2010).
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 21611-21616
    • Cockram, J.1
  • 7
    • 64749090107 scopus 로고    scopus 로고
    • Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing
    • Trick, M., Long, Y., Meng, J. & Bancroft, I. Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing. Plant Biotechnol. J. 7, 334-346 (2009).
    • (2009) Plant Biotechnol. J. , vol.7 , pp. 334-346
    • Trick, M.1    Long, Y.2    Meng, J.3    Bancroft, I.4
  • 8
    • 79961199174 scopus 로고    scopus 로고
    • Genome dissection in the polyploid crop oilseed rape by transcriptome sequencing
    • Bancroft, I. et al. Genome dissection in the polyploid crop oilseed rape by transcriptome sequencing. Nat. Biotechnol. 29, 762-766 (2011).
    • (2011) Nat. Biotechnol. , vol.29 , pp. 762-766
    • Bancroft, I.1
  • 9
    • 70249111091 scopus 로고    scopus 로고
    • Targeted capture and massively parallel sequencing of 12 human exomes
    • Ng, S.B. et al. Targeted capture and massively parallel sequencing of 12 human exomes. Nature 461, 272-276 (2009).
    • (2009) Nature , vol.461 , pp. 272-276
    • Ng, S.B.1
  • 10
    • 0345071423 scopus 로고    scopus 로고
    • Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing
    • Adams, K.L., Cronn, R., Percifield, R. & Wendel, J.F. Genes duplicated by polyploidy show unequal contributions to the transcriptome and organ-specific reciprocal silencing. Proc. Natl. Acad. Sci. USA 100, 4649-4654 (2003).
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 4649-4654
    • Adams, K.L.1    Cronn, R.2    Percifield, R.3    Wendel, J.F.4
  • 11
    • 0346091243 scopus 로고    scopus 로고
    • Flowering time divergence and genomic rearrangements in resynthesized Brassica polyploids (Brassicaceae)
    • Pires, C.J. et al. Flowering time divergence and genomic rearrangements in resynthesized Brassica polyploids (Brassicaceae). Biol. J. Linn. Soc. 82, 675-688 (2004).
    • (2004) Biol. J. Linn. Soc. , vol.82 , pp. 675-688
    • Pires, C.J.1
  • 12
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome of the flowering plant Arabidopsis thaliana
    • Arabidopsis Genome Initiative
    • Arabidopsis Genome Initiative. Analysis of the genome of the flowering plant Arabidopsis thaliana. Nature 408, 796 (2000).
    • (2000) Nature , vol.408 , pp. 796
  • 14
    • 0033893554 scopus 로고    scopus 로고
    • Comparative physical mapping of segments of the genome of Brassica oleracea var. alboglabra that are homoeologous to sequenced regions of chromosomes 4 and 5 of Arabidopsis thaliana
    • O'Neill, C.M. & Bancroft, I. Comparative physical mapping of segments of the genome of Brassica oleracea var. alboglabra that are homoeologous to sequenced regions of chromosomes 4 and 5 of Arabidopsis thaliana. Plant J. 23, 233 (2000).
    • (2000) Plant J , vol.23 , pp. 233
    • O'Neill, C.M.1    Bancroft, I.2
  • 15
    • 33745487720 scopus 로고    scopus 로고
    • Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa
    • Yang, T.J. et al. Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa. Plant Cell 18, 1339 (2006).
    • (2006) Plant Cell , vol.18 , pp. 1339
    • Yang, T.J.1
  • 16
    • 33745467604 scopus 로고    scopus 로고
    • Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy
    • Town, C.D. et al. Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy. Plant Cell 18, 1348-1359 (2006).
    • (2006) Plant Cell , vol.18 , pp. 1348-1359
    • Town, C.D.1
  • 17
    • 69949128558 scopus 로고    scopus 로고
    • Comparative analysis between homoeologous genome segments of Brassica napus and its progenitor species reveals extensive sequence-level divergence
    • Cheung, F. et al. Comparative analysis between homoeologous genome segments of Brassica napus and its progenitor species reveals extensive sequence-level divergence. Plant Cell 21, 1912 (2009).
    • (2009) Plant Cell , vol.21 , pp. 1912
    • Cheung, F.1
  • 18
    • 80053386792 scopus 로고    scopus 로고
    • The Brassica rapa Genome Sequencing Project Consortium the genome of the mesopolyploid crop species Brassica rapa
    • The Brassica rapa Genome Sequencing Project Consortium. The genome of the mesopolyploid crop species Brassica rapa. Nat. Genet. 43, 1035-1039 (2011).
    • (2011) Nat. Genet. , vol.43 , pp. 1035-1039
  • 19
    • 84862231139 scopus 로고    scopus 로고
    • Use of mRNA-Seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus
    • Higgins, J., Magusin, A., Trick, M., Fraser, F. & Bancroft, I. Use of mRNA-Seq to discriminate contributions to the transcriptome from the constituent genomes of the polyploid crop species Brassica napus. BMC Genomics 13, 247 (2012).
    • BMC Genomics , vol.13 , Issue.247 , pp. 2012
    • Higgins, J.1    Magusin, A.2    Trick, M.3    Fraser, F.4    Bancroft, I.5
  • 20
    • 0037572292 scopus 로고    scopus 로고
    • Patterns of duplication within the Brassica napus genome
    • Parkin, I.A.P., Sharpe, A.G. & Lydiate, D.J. Patterns of duplication within the Brassica napus genome. Genome 46, 291-303 (2003).
    • (2003) Genome , vol.46 , pp. 291-303
    • Parkin, I.A.P.1    Sharpe, A.G.2    Lydiate, D.J.3
  • 21
    • 0042072811 scopus 로고    scopus 로고
    • Homeologous loci control the accumulation of seed glucosinolates in oilseed rape (Brassica napus)
    • Howell, P.M., Sharpe, A.G. & Lydiate, D.J. Homeologous loci control the accumulation of seed glucosinolates in oilseed rape (Brassica napus). Genome 46, 454-460 (2003).
    • (2003) Genome , vol.46 , pp. 454-460
    • Howell, P.M.1    Sharpe, A.G.2    Lydiate, D.J.3
  • 22
    • 33646008231 scopus 로고    scopus 로고
    • Analysis of genetic diversity in the Brassica napus L gene pool using SSR markers
    • Hasan, M. et al. Analysis of genetic diversity in the Brassica napus L. gene pool using SSR markers. Genet. Resour. Crop Evol. 53, 793-802 (2006).
    • (2006) Genet. Resour. Crop Evol. , vol.53 , pp. 793-802
    • Hasan, M.1
  • 23
    • 0031926971 scopus 로고    scopus 로고
    • The two genes homologous to Arabidopsis FAE1 co-segregate with the two loci governing erucic acid content in Brassica napus
    • Fourmann, M. et al. The two genes homologous to Arabidopsis FAE1 co-segregate with the two loci governing erucic acid content in Brassica napus. Theor. Appl. Genet. 96, 852-858 (1998).
    • (1998) Theor. Appl. Genet. , vol.96 , pp. 852-858
    • Fourmann, M.1
  • 24
    • 0029257170 scopus 로고
    • Directed tagging of the Arabidopsis fatty acid elongase-1 (FAE1) gene with the maize transposon activator
    • James, D.W.J. et al. Directed tagging of the Arabidopsis fatty acid elongase-1 (FAE1) gene with the maize transposon activator. Plant Cell 7, 309-319 (1995).
    • (1995) Plant Cell , vol.7 , pp. 309-319
    • James, D.W.J.1
  • 25
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study
    • Evanno, G., Regnaut, S. & Goudet, J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14, 2611-2620 (2005).
    • (2005) Mol. Ecol. , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 26
    • 77950023622 scopus 로고    scopus 로고
    • Extent and structure of linkage disequilibrium in canola quality winter rapeseed (Brassica napus L.)
    • Ecke, W., Clemens, R., Honsdorf, N. & Becker, H.C. Extent and structure of linkage disequilibrium in canola quality winter rapeseed (Brassica napus L.). Theor. Appl. Genet. 120, 921-931 (2010).
    • (2010) Theor. Appl. Genet. , vol.120 , pp. 921-931
    • Ecke, W.1    Clemens, R.2    Honsdorf, N.3    Becker, H.C.4
  • 27
    • 77952424789 scopus 로고    scopus 로고
    • An association transcriptomics approach to the prediction of hybrid performance
    • Stokes, D. et al. An association transcriptomics approach to the prediction of hybrid performance. Mol. Breed. 26, 91-106 (2010).
    • (2010) Mol. Breed. , vol.26 , pp. 91-106
    • Stokes, D.1
  • 28
    • 34547526914 scopus 로고    scopus 로고
    • Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis
    • Hirai, M.Y. et al. Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis. Proc. Natl. Acad. Sci. USA 104, 6478-6483 (2007).
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 6478-6483
    • Hirai, M.Y.1
  • 29
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr, M. et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat. Biotechnol. 29, 644-652 (2011).
    • (2011) Nat. Biotechnol. , vol.29 , pp. 644-652
    • Grabherr, M.1
  • 30
    • 66149142707 scopus 로고    scopus 로고
    • A newly developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences
    • Trick, M. et al. A newly developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences. BMC Plant Biol. 9, 50 (2009).
    • (2009) BMC Plant Biol , vol.9 , pp. 50
    • Trick, M.1
  • 32
    • 35748946021 scopus 로고    scopus 로고
    • TASSEL: Software for association mapping of complex traits in diverse samples
    • Bradbury, P.J. et al. TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics 23, 2633-2635 (2007).
    • (2007) Bioinformatics , vol.23 , pp. 2633-2635
    • Bradbury, P.J.1
  • 33
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard, J.K., Stephens, M. & Donnelly, P. Inference of population structure using multilocus genotype data. Genetics 155, 945-959 (2000).
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 34
    • 23944458138 scopus 로고    scopus 로고
    • A general framework for weighted gene co-expression network analysis
    • Zhang, B. & Horvath, S. A general framework for weighted gene co-expression network analysis. Stat. Appl. Genet. Mol. Biol. 4, 17 (2005).
    • (2005) Stat. Appl. Genet. Mol. Biol. , vol.4 , pp. 17
    • Zhang, B.1    Horvath, S.2
  • 35
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: An R package for weighted gene co-expression network analysis
    • Langfelder, P. & Horvath, S. WGCNA: an R package for weighted gene co-expression network analysis. BMC Bioinformatics 9, 559 (2008).
    • (2008) BMC Bioinformatics , vol.9 , pp. 559
    • Langfelder, P.1    Horvath, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.