-
2
-
-
70349948795
-
How to visually interpret biological data using networks
-
Merico D, Gfeller D, Bader GD (2009) How to visually interpret biological data using networks. Nat Biotechnol 27(10):921-924
-
(2009)
Nat Biotechnol
, vol.27
, Issue.10
, pp. 921-924
-
-
Merico, D.1
Gfeller, D.2
Bader, G.D.3
-
3
-
-
34249041230
-
Exploring genetic interactions and networks with yeast
-
DOI 10.1038/nrg2085, PII NRG2085
-
Boone C, Bussey H, Andrews BJ (2007) Exploring genetic interactions and networks with yeast. Nat Rev Genet 8(6):437-449 (Pubitemid 46789246)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.6
, pp. 437-449
-
-
Boone, C.1
Bussey, H.2
Andrews, B.J.3
-
4
-
-
2942534300
-
Interactome data and databases: Different types of protein interaction
-
DOI 10.1002/cfg.377
-
De Las Rivas J, de Luis A (2004) Interactome data and databases: different types of protein interaction. Comp Funct Genomics 5(2):173-178 (Pubitemid 38744654)
-
(2004)
Comparative and Functional Genomics
, vol.5
, Issue.2
, pp. 173-178
-
-
De Las Rivas, J.1
De Luis, A.2
-
5
-
-
77955505357
-
Protein-protein interactions essentials: Key concepts to building and analyzing interactome networks
-
De Las Rivas J, Fontanillo C (2010) Protein-protein interactions essentials: key concepts to building and analyzing interactome networks. PLoS Comput Biol 6(6):e1000807
-
(2010)
PLoS Comput Biol
, vol.6
, Issue.6
-
-
De Las Rivas, J.1
Fontanillo, C.2
-
6
-
-
58049198442
-
Human gene coexpression landscape: Con fi dent network derivedfrom tissue transcriptomic pro fi les
-
Prieto C et al (2008) Human gene coexpression landscape: con fi dent network derivedfrom tissue transcriptomic pro fi les. PLoS One 3(12):e3911
-
(2008)
PLoS One
, vol.3
, Issue.12
-
-
Prieto, C.1
-
7
-
-
77950353931
-
Toward the dynamic interactome: It's about time
-
Przytycka TM, Singh M, Slonim DK (2010) Toward the dynamic interactome: it's about time. Brief Bioinform 11(1):15-29
-
(2010)
Brief Bioinform
, vol.11
, Issue.1
, pp. 15-29
-
-
Przytycka, T.M.1
Singh, M.2
Slonim, D.K.3
-
8
-
-
45849095234
-
Biochemistry. How do proteins interact?
-
Boehr DD, Wright PE (2008) Biochemistry. How do proteins interact? Science 320(5882): 1429-1430
-
(2008)
Science
, vol.320
, Issue.5882
, pp. 1429-1430
-
-
Boehr, D.D.1
Wright, P.E.2
-
9
-
-
36249019164
-
Protein interactions: Is seeing believing?
-
Mackay JP et al (2007) Protein interactions: is seeing believing? Trends Biochem Sci 32(12): 530-531.
-
(2007)
Trends Biochem Sci
, vol.32
, Issue.12
, pp. 530-531
-
-
MacKay, J.P.1
-
10
-
-
33747853260
-
APID: Agile protein interaction DataAnalyzer
-
DOI 10.1093/nar/gkl128
-
Prieto C, De Las Rivas J (2006) APID: Agile Protein Interaction Data analyzer. Nucleic Acids Res 34(Web Server Issue): W298-W302. (Pubitemid 44529782)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.WEB. SERV. ISS.
-
-
Prieto, C.1
De Las Rivas, J.2
-
11
-
-
77956040602
-
High-quality binary interactome mapping
-
Dreze M et al (2010) High-quality binary interactome mapping. Methods Enzymol 470:281-315.
-
(2010)
Methods Enzymol
, vol.470
, pp. 281-315
-
-
Dreze, M.1
-
13
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
DOI 10.1038/35001009
-
Uetz P et al (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae . Nature 403(6770):623-627. (Pubitemid 30103994)
-
(2000)
Nature
, vol.403
, Issue.6770
, pp. 623-627
-
-
Uetz, P.1
Glot, L.2
Cagney, G.3
Mansfield, T.A.4
Judson, R.S.5
Knight, J.R.6
Lockshon, D.7
Narayan, V.8
Srinivasan, M.9
Pochart, P.10
Qureshi-Emlli, A.11
Li, Y.12
Godwin, B.13
Conover, D.14
Kalbfleisch, T.15
Vijayadamodar, G.16
Yang, M.17
Johnston, M.18
Fields, S.19
Rothberg, J.M.20
more..
-
15
-
-
0345600247
-
A Protein Interaction Map of Drosophila melanogaster
-
DOI 10.1126/science.1090289
-
Giot L et al (2003) A protein interaction map of Drosophila melanogaster . Science 302(5651): 1727-1736. (Pubitemid 37505730)
-
(2003)
Science
, vol.302
, Issue.5651
, pp. 1727-1736
-
-
Giot, L.1
Bader, J.S.2
Brouwer, C.3
Chaudhuri, A.4
Kuang, B.5
Li, Y.6
Hao, Y.L.7
Ooi, C.E.8
Godwin, B.9
Vitols, E.10
Vijayadamodar, G.11
Pochart, P.12
Machineni, H.13
Welsh, M.14
Kong, Y.15
Zerhusen, B.16
Malcolm, R.17
Varrone, Z.18
Collis, A.19
Minto, M.20
Burgess, S.21
McDaniel, L.22
Stimpson, E.23
Spriggs, F.24
Williams, J.25
Neurath, K.26
Ioime, N.27
Agee, M.28
Voss, E.29
Furtak, K.30
Renzulli, R.31
Aanensen, N.32
Carrolla, S.33
Bickelhaupt, E.34
Lazovatsky, Y.35
DaSilva, A.36
Zhong, J.37
Stanyon, C.A.38
Finley Jr., R.L.39
White, K.P.40
Braverman, M.41
Jarvie, T.42
Gold, S.43
Leach, M.44
Knight, J.45
Shimkets, R.A.46
McKenna, M.P.47
Chant, J.48
Rothberg, J.M.49
more..
-
16
-
-
20144379646
-
Protein interaction mapping: A Drosophila case study
-
DOI 10.1101/gr.2659105
-
Formstecher E et al (2005) Protein interaction mapping: a Drosophila case study. Genome Res 15(3):376-384. (Pubitemid 40467779)
-
(2005)
Genome Research
, vol.15
, Issue.3
, pp. 376-384
-
-
Formstecher, E.1
Aresta, S.2
Collura, V.3
Hamburger, A.4
Meil, A.5
Trehin, A.6
Reverdy, C.7
Betin, V.8
Maire, S.9
Brun, C.10
Jacq, B.11
Arpin, M.12
Bellaiche, Y.13
Bellusci, S.14
Benaroch, P.15
Bornens, M.16
Chanet, R.17
Chavrier, P.18
Delattre, O.19
Doye, V.20
Fehon, R.21
Faye, G.22
Galli, T.23
Girault, J.-A.24
Goud, B.25
De Gunzburg, J.26
Johannes, L.27
Junier, M.-P.28
Mirouse, V.29
Mukherjee, A.30
Papadopoulo, D.31
Perez, F.32
Plessis, A.33
Rosse, C.34
Saule, S.35
Stoppa-Lyonnet, D.36
Vincent, A.37
White, M.38
Legrain, P.39
Wojcik, J.40
Camonis, J.41
Daviet, L.42
more..
-
17
-
-
25144498379
-
A human protein-protein interaction network: A resource for annotating the proteome
-
DOI 10.1016/j.cell.2005.08.029, PII S0092867405008664
-
Stelzl U et al (2005) A human protein-protein interaction network: a resource for annotating the proteome. Cell 122(6):957-968. (Pubitemid 41345212)
-
(2005)
Cell
, vol.122
, Issue.6
, pp. 957-968
-
-
Stelzl, U.1
Worm, U.2
Lalowski, M.3
Haenig, C.4
Brembeck, F.H.5
Goehler, H.6
Stroedicke, M.7
Zenkner, M.8
Schoenherr, A.9
Koeppen, S.10
Timm, J.11
Mintzlaff, S.12
Abraham, C.13
Bock, N.14
Kietzmann, S.15
Goedde, A.16
Toksoz, E.17
Droege, A.18
Krobitsch, S.19
Korn, B.20
Birchmeier, W.21
Lehrach, H.22
Wanker, E.E.23
more..
-
18
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
Rual JF et al (2005) Towards a proteome-scale map of the human protein-protein interaction network. Nature 437(7062):1173-1178.
-
(2005)
Nature
, vol.437
, Issue.7062
, pp. 1173-1178
-
-
Rual, J.F.1
-
19
-
-
58149213932
-
Literature-curated protein interaction datasets
-
Cusick ME et al (2009) Literature-curated protein interaction datasets. Nat Methods 6(1):39-46.
-
(2009)
Nat Methods
, vol.6
, Issue.1
, pp. 39-46
-
-
Cusick, M.E.1
-
20
-
-
73349085604
-
Recurated protein interaction datasets
-
Salwinski L et al (2009) Recurated protein interaction datasets. Nat Methods 6(12): 860-861.
-
(2009)
Nat Methods
, vol.6
, Issue.12
, pp. 860-861
-
-
Salwinski, L.1
-
21
-
-
33644873184
-
BioGRID: A general repository for interaction datasets
-
Stark C et al (2006) BioGRID: a general repository for interaction datasets. Nucleic Acids Res 34(Database Issue):D535-D539.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Stark, C.1
-
23
-
-
10744224197
-
Development of human protein reference database as an initial platform for approaching systems biology in humans
-
DOI 10.1101/gr.1680803
-
Peri S et al (2003) Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Res 13(10):2363-2371. (Pubitemid 37266003)
-
(2003)
Genome Research
, vol.13
, Issue.10
, pp. 2363-2371
-
-
Peri, S.1
Navarro, J.D.2
Amanchy, R.3
Kristiansen, T.Z.4
Jonnalagadda, C.K.5
Surendranath, V.6
Niranjan, V.7
Muthusamy, B.8
Gandhi, T.K.B.9
Gronborg, M.10
Ibarrola, N.11
Deshpande, N.12
Shanker, K.13
Shivashankar, H.N.14
Rashmi, B.P.15
Ramya, M.A.16
Zhao, Z.17
Chandrika, K.N.18
Padma, N.19
Harsha, H.C.20
Yatish, A.J.21
Kavitha, M.P.22
Menezes, M.23
Choudhury, D.R.24
Suresh, S.25
Ghosh, N.26
Saravana, R.27
Chandran, S.28
Krishna, S.29
Joy, M.30
Anand, S.K.31
Madavan, V.32
Joseph, A.33
Wong, G.W.34
Schiemann, W.P.35
Constantinescu, S.N.36
Huang, L.37
Khosravi-Far, R.38
Steen, H.39
Tewari, M.40
Ghaffari, S.41
Blobe, G.C.42
Dang, C.V.43
Garcia, J.G.N.44
Pevsner, J.45
Jensen, O.N.46
Roepstorff, P.47
Deshpande, K.S.48
Chinnaiyan, A.M.49
Hamosh, A.50
Chakravarti, A.51
Pandey, A.52
more..
-
24
-
-
9144248312
-
IntAct: An open source molecular interaction database
-
Hermjakob H et al (2004) IntAct: an open source molecular interaction database. Nucleic Acids Res 32(Database Issue):D452-D455. (Pubitemid 38081697)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.DATABASE ISS.
-
-
Hermjakob, H.1
Montecchi-Palazzi, L.2
Lewington, C.3
Mudali, S.4
Kerrien, S.5
Orchard, S.6
Vingron, M.7
Roechert, B.8
Roepstorff, P.9
Valencia, A.10
Margalit, H.11
Armstrong, J.12
Bairoch, A.13
Cesareni, G.14
Sherman, D.15
Apweiler, R.16
-
25
-
-
75549083295
-
MINT, the molecular interaction database: 2009 update
-
Ceol A et al (2010) MINT, the molecular interaction database: 2009 update. Nucleic Acids Res 38(Database Issue):D532-D539.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Ceol, A.1
-
27
-
-
34548792342
-
APID2NET: Unified interactome graphic analyzer
-
DOI 10.1093/bioinformatics/btm373
-
Hernandez-Toro J, Prieto C, De Las Rivas J (2007) APID2NET: uni fi ed interactome graphic analyzer. Bioinformatics 23(18):2495-2497. (Pubitemid 47423852)
-
(2007)
Bioinformatics
, vol.23
, Issue.18
, pp. 2495-2497
-
-
Hernandez-Toro, J.1
Prieto, C.2
De Las Rivas, J.3
-
29
-
-
53349117774
-
High-quality binary protein interaction map of the yeast interactome network
-
Yu H et al (2008) High-quality binary protein interaction map of the yeast interactome network. Science 322(5898):104-110.
-
(2008)
Science
, vol.322
, Issue.5898
, pp. 104-110
-
-
Yu, H.1
-
30
-
-
27944493925
-
Scale-free networks in cell biology
-
DOI 10.1242/jcs.02714
-
Albert R (2005) Scale-free networks in cell biology. J Cell Sci 118(Pt 21):4947-4957. (Pubitemid 41672427)
-
(2005)
Journal of Cell Science
, vol.118
, Issue.21
, pp. 4947-4957
-
-
Albert, R.1
-
31
-
-
0032482432
-
Collective dynamics of 'small-world' networks
-
DOI 10.1038/30918
-
Watts DJ, Strogatz SH (1998) Collective dynamics of 'small-world' networks. Nature 393(6684):440-442. (Pubitemid 28292183)
-
(1998)
Nature
, vol.393
, Issue.6684
, pp. 440-442
-
-
Watts, D.J.1
Strogatz, S.H.2
-
32
-
-
0036013593
-
Statistical mechanics of complex networks
-
Albert R et al (2002) Statistical mechanics of complex networks. Rev Mod Phys 74(1):47.
-
(2002)
Rev Mod Phys
, vol.74
, Issue.1
, pp. 47
-
-
Albert, R.1
-
33
-
-
3042848952
-
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
-
Han JD et al (2004) Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature 430(6995): 88-93.
-
(2004)
Nature
, vol.430
, Issue.6995
, pp. 88-93
-
-
Han, J.D.1
-
34
-
-
0035799707
-
Lethality and centrality in protein networks
-
DOI 10.1038/35075138
-
Jeong H et al (2001) Lethality and centrality in protein networks. Nature 411(6833):41-42. (Pubitemid 32428180)
-
(2001)
Nature
, vol.411
, Issue.6833
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabasi, A.-L.3
Oltvai, Z.N.4
-
36
-
-
0242490780
-
Cytoscape: A software Environment for integrated models of biomolecular interaction networks
-
DOI 10.1101/gr.1239303
-
Shannon P et al (2003) Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 13(11):2498-2504. (Pubitemid 37428274)
-
(2003)
Genome Research
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
37
-
-
38349164409
-
Computing topological parameters of biological networks
-
Assenov Y et al (2008) Computing topological parameters of biological networks. Bioinformatics 24(2):282-284.
-
(2008)
Bioinformatics
, vol.24
, Issue.2
, pp. 282-284
-
-
Assenov, Y.1
-
38
-
-
2942552459
-
An automated method for fi nding molecular complexes in large protein interaction networks
-
Bader GD, Hogue CW (2003) An automated method for fi nding molecular complexes in large protein interaction networks. BMC Bioinform 4:2.
-
(2003)
BMC Bioinform
, vol.4
, pp. 2
-
-
Bader, G.D.1
Hogue, C.W.2
-
39
-
-
75149120711
-
NeMo: Network module identi fi cation in Cytoscape
-
Rivera CG, Vakil R, Bader JS (2010) NeMo: network module identi fi cation in Cytoscape. BMC Bioinform 11(Suppl 1):S61.
-
(2010)
BMC Bioinform
, vol.11
, Issue.SUPPL.. 1
-
-
Rivera, C.G.1
Vakil, R.2
Bader, J.S.3
-
40
-
-
65349131253
-
Molecular network of the comprehensive multiple sclerosis brain-lesion proteome
-
Satoh JI, Tabunoki H, Yamamura T (2009) Molecular network of the comprehensive multiple sclerosis brain-lesion proteome. Mult Scler 15(5):531-541
-
(2009)
Mult Scler
, vol.15
, Issue.5
, pp. 531-541
-
-
Satoh, J.I.1
Tabunoki, H.2
Yamamura, T.3
-
41
-
-
48149098006
-
A computational analysis of protein-protein interaction networks in neurodegenerative diseases
-
Goni J et al (2008) A computational analysis of protein-protein interaction networks in neurodegenerative diseases. BMC Syst Biol 2:52.
-
(2008)
BMC Syst Biol
, vol.2
, pp. 52
-
-
Goni, J.1
-
42
-
-
79952267533
-
Interactome mapping suggests new mechanistic details underlying Alzheimer's disease
-
Soler-Lopez M et al (2010) Interactome mapping suggests new mechanistic details underlying Alzheimer's disease. Genome Res 21: 364-376.
-
(2010)
Genome Res
, vol.21
, pp. 364-376
-
-
Soler-Lopez, M.1
-
43
-
-
35349024501
-
Network modeling links breast cancer susceptibility and centrosome dysfunction
-
DOI 10.1038/ng.2007.2, PII NG20072
-
Pujana MA et al (2007) Network modeling links breast cancer susceptibility and centrosome dysfunction. Nat Genet 39(11):1338-1349. (Pubitemid 350035000)
-
(2007)
Nature Genetics
, vol.39
, Issue.11
, pp. 1338-1349
-
-
Pujana, M.A.1
Han, J.-D.J.2
Starita, L.M.3
Stevens, K.N.4
Tewari, M.5
Ahn, J.S.6
Rennert, G.7
Moreno, V.8
Kirchhoff, T.9
Gold, B.10
Assmann, V.11
Elshamy, W.M.12
Rual, J.-F.13
Levine, D.14
Rozek, L.S.15
Gelman, R.S.16
Gunsalus, K.C.17
Greenberg, R.A.18
Sobhian, B.19
Bertin, N.20
Venkatesan, K.21
Ayivi-Guedehoussou, N.22
Sole, X.23
Hernandez, P.24
Lazaro, C.25
Nathanson, K.L.26
Weber, B.L.27
Cusick, M.E.28
Hill, D.E.29
Offit, K.30
Livingston, D.M.31
Gruber, S.B.32
Parvin, J.D.33
Vidal, M.34
more..
-
44
-
-
77957694184
-
Identi fi cation of diagnostic subnetwork markers for cancer in human protein-protein interaction network
-
Su J, Yoon BJ, Dougherty ER (2010) Identi fi cation of diagnostic subnetwork markers for cancer in human protein-protein interaction network. BMC Bioinform 11(Suppl 6):S8.
-
(2010)
BMC Bioinform
, vol.11
, Issue.SUPPL. 6
-
-
Su, J.1
Yoon, B.J.2
Dougherty, E.R.3
-
45
-
-
78149493309
-
Constructing the HBVhuman protein interaction network to understand the relationship between HBV and hepatocellular carcinoma
-
Wu ZJ et al (2010) Constructing the HBVhuman protein interaction network to understand the relationship between HBV and hepatocellular carcinoma. J Exp Clin Cancer Res 29:146.
-
(2010)
J Exp Clin Cancer Res
, vol.29
, pp. 146
-
-
Wu, Z.J.1
-
46
-
-
78049507670
-
Multi-level reproducibility of signature hubs in human interactome for breast cancer metastasis
-
Yao C et al (2010) Multi-level reproducibility of signature hubs in human interactome for breast cancer metastasis. BMC Syst Biol 4:151.
-
(2010)
BMC Syst Biol
, vol.4
, pp. 151
-
-
Yao, C.1
-
47
-
-
54249155522
-
Network pharmacology: The next paradigm in drug discovery
-
Hopkins AL (2008) Network pharmacology: the next paradigm in drug discovery. Nat Chem Biol 4(11):682-690.
-
(2008)
Nat Chem Biol
, vol.4
, Issue.11
, pp. 682-690
-
-
Hopkins, A.L.1
-
48
-
-
33644617753
-
Analysis of the human protein interactome and comparison with yeast, worm and fl y interaction datasets
-
Gandhi TK et al (2006) Analysis of the human protein interactome and comparison with yeast, worm and fl y interaction datasets. Nat Genet 38(3):285-293.
-
(2006)
Nat Genet
, vol.38
, Issue.3
, pp. 285-293
-
-
Gandhi, T.K.1
-
49
-
-
33748706765
-
Global topological features of cancer proteins in the human interactome
-
DOI 10.1093/bioinformatics/btl390
-
Jonsson PF, Bates PA (2006) Global topological features of cancer proteins in the human interactome. Bioinformatics 22(18):2291-2297. (Pubitemid 44390886)
-
(2006)
Bioinformatics
, vol.22
, Issue.18
, pp. 2291-2297
-
-
Jonsson, P.F.1
Bates, P.A.2
-
50
-
-
33751017706
-
Discovering disease-genes by topological features in human protein-protein interaction network
-
DOI 10.1093/bioinformatics/btl467
-
Xu J, Li Y (2006) Discovering disease-genes by topological features in human protein-protein interaction network. Bioinformatics 22(22): 2800-2805. (Pubitemid 44742401)
-
(2006)
Bioinformatics
, vol.22
, Issue.22
, pp. 2800-2805
-
-
Xu, J.1
Li, Y.2
-
51
-
-
34547140875
-
The human disease network
-
Goh KI et al (2007) The human disease network. Proc Natl Acad Sci USA 104(21): 8685-8690.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.21
, pp. 8685-8690
-
-
Goh, K.I.1
-
52
-
-
33847377573
-
A robustness-based approach to systems-oriented drug design
-
DOI 10.1038/nrd2195, PII NRD2195
-
Kitano H (2007) A robustness-based approach to systems-oriented drug design. Nat Rev Drug Discov 6(3):202-210. (Pubitemid 46344624)
-
(2007)
Nature Reviews Drug Discovery
, vol.6
, Issue.3
, pp. 202-210
-
-
Kitano, H.1
-
53
-
-
66249092826
-
Information fl ow analysis of interactome networks
-
Missiuro PV et al (2009) Information fl ow analysis of interactome networks. PLoS Comput Biol 5(4):e1000350.
-
(2009)
PLoS Comput Biol
, vol.5
, Issue.4
-
-
Missiuro, P.V.1
-
54
-
-
54349093738
-
Identi fi cation of information fl ow-modulating drug targets: A novel bridging paradigm for drug discovery
-
Hwang WC, Zhang A, Ramanathan M (2008) Identi fi cation of information fl ow-modulating drug targets: a novel bridging paradigm for drug discovery. Clin Pharmacol Ther 84(5):563-572.
-
(2008)
Clin Pharmacol Ther
, vol.84
, Issue.5
, pp. 563-572
-
-
Hwang, W.C.1
Zhang, A.2
Ramanathan, M.3
-
55
-
-
77952473769
-
Strategies for protein synthetic biology
-
Grunberg R, Serrano L (2010) Strategies for protein synthetic biology. Nucleic Acids Res 38(8):2663-2675.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.8
, pp. 2663-2675
-
-
Grunberg, R.1
Serrano, L.2
-
56
-
-
77957108545
-
Protein network prediction and topological analysis in Leishmania major as a tool for drug target selection
-
Florez AF et al (2010) Protein network prediction and topological analysis in Leishmania major as a tool for drug target selection. BMC Bioinform 11:484.
-
(2010)
BMC Bioinform
, vol.11
, pp. 484
-
-
Florez, A.F.1
-
57
-
-
78049303086
-
A network approach to predict pathogenic genes for Fusarium graminearum
-
Liu X et al (2010) A network approach to predict pathogenic genes for Fusarium graminearum. PLoS One 5(10):e13021.
-
(2010)
PLoS One
, vol.5
, Issue.10
-
-
Liu, X.1
-
58
-
-
78649849857
-
Global protein-protein interaction network in the human pathogen Mycobacterium tuberculosis H37Rv
-
Wang Y et al (2010) Global protein-protein interaction network in the human pathogen Mycobacterium tuberculosis H37Rv. J Proteome Res 9(12):6665-6677.
-
(2010)
J Proteome Res
, vol.9
, Issue.12
, pp. 6665-6677
-
-
Wang, Y.1
-
59
-
-
42049090140
-
A novel lung cancer signature mediates metastatic bone colonization by a dual mechanism
-
DOI 10.1158/0008-5472.CAN-07-6493
-
Vicent S et al (2008) A novel lung cancer signature mediates metastatic bone colonization by a dual mechanism. Cancer Res 68(7): 2275-2285. (Pubitemid 351521801)
-
(2008)
Cancer Research
, vol.68
, Issue.7
, pp. 2275-2285
-
-
Vicent, S.1
Luis-Ravelo, D.2
Anton, I.3
Garcia-Tunon, I.4
Borras-Cuesta, F.5
Dotor, J.6
De Las Rivas, J.7
Lecanda, F.8
-
60
-
-
84934438895
-
Systems biology approaches and tools for analysis of interactomes and multi-target drugs
-
Schrattenholz A, Groebe K, Soskic V (2010) Systems biology approaches and tools for analysis of interactomes and multi-target drugs. Methods Mol Biol 662:29-58.
-
(2010)
Methods Mol Biol
, vol.662
, pp. 29-58
-
-
Schrattenholz, A.1
Groebe, K.2
Soskic, V.3
-
61
-
-
77956838065
-
Advances in understanding cancer genomes through second-generation sequencing
-
Meyerson M, Gabriel S, Getz G (2010) Advances in understanding cancer genomes through second-generation sequencing. Nat Rev Genet 11(10):685-696.
-
(2010)
Nat Rev Genet
, vol.11
, Issue.10
, pp. 685-696
-
-
Meyerson, M.1
Gabriel, S.2
Getz, G.3
-
62
-
-
47349124275
-
What does systems biology mean for drug development?
-
DOI 10.2174/092986708784638843
-
Schrattenholz A, Soskic V (2008) What does systems biology mean for drug development? Curr Med Chem 15(15):1520-1528. (Pubitemid 351997783)
-
(2008)
Current Medicinal Chemistry
, vol.15
, Issue.15
, pp. 1520-1528
-
-
Schrattenholz, A.1
Soskic, V.2
-
63
-
-
15044349115
-
The efficiency of multi-target drugs: The network approach might help drug design
-
DOI 10.1016/j.tips.2005.02.007
-
Csermely P, Agoston V, Pongor S (2005) The ef fi ciency of multi-target drugs: the network approach might help drug design. Trends Pharmacol Sci 26(4):178-182. (Pubitemid 40432652)
-
(2005)
Trends in Pharmacological Sciences
, vol.26
, Issue.4
, pp. 178-182
-
-
Csermely, P.1
Agoston, V.2
Pongor, S.3
-
64
-
-
77954052283
-
Systems approaches to polypharmacology and drug discovery
-
Boran AD, Iyengar R (2010) Systems approaches to polypharmacology and drug discovery. Curr Opin Drug Discov Dev 13(3):297-309.
-
(2010)
Curr Opin Drug Discov Dev
, vol.13
, Issue.3
, pp. 297-309
-
-
Boran, A.D.1
Iyengar, R.2
-
65
-
-
77958153651
-
Cause-effect relationships in medicine: A protein network perspective
-
Fliri AF, Loging WT, Volkmann RA (2010) Cause-effect relationships in medicine: a protein network perspective. Trends Pharmacol Sci 31(11):547-555.
-
(2010)
Trends Pharmacol Sci
, vol.31
, Issue.11
, pp. 547-555
-
-
Fliri, A.F.1
Loging, W.T.2
Volkmann, R.A.3
-
67
-
-
78651339534
-
NCBI GEO: Archive for functional genomics data sets-10 years on
-
Barrett T et al (2011) NCBI GEO: archive for functional genomics data sets-10 years on. Nucleic Acids Res 39(Database Issue): D1005-D1010.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Barrett, T.1
-
68
-
-
78651284406
-
ArrayExpress update-an archive of microarray and highthroughput sequencing-based functional genomics experiments
-
Parkinson H et al (2011) ArrayExpress update-an archive of microarray and highthroughput sequencing-based functional genomics experiments. Nucleic Acids Res 39(Database Issue): D1002-D1004.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Parkinson, H.1
-
69
-
-
30744468098
-
Inferring network interactions within a cell
-
DOI 10.1093/bib/6.4.380
-
Carter GW (2005) Inferring network interactions within a cell. Brief Bioinform 6(4):380-389. (Pubitemid 43091943)
-
(2005)
Briefings in Bioinformatics
, vol.6
, Issue.4
, pp. 380-389
-
-
Carter, G.W.1
-
70
-
-
0037482108
-
Assessment of the reliability of protein-protein interactions and protein function prediction
-
Deng M, Sun F, Chen T (2003) Assessment of the reliability of protein-protein interactions and protein function prediction. Pac Symp Biocomput 2003:140-151.
-
(2003)
Pac Symp Biocomput
, vol.2003
, pp. 140-151
-
-
Deng, M.1
Sun, F.2
Chen, T.3
-
71
-
-
77957892202
-
Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy
-
Lin CC et al (2010) Dynamic functional modules in co-expressed protein interaction networks of dilated cardiomyopathy. BMC Syst Biol 4:138
-
(2010)
BMC Syst Biol
, vol.4
, pp. 138
-
-
Lin, C.C.1
-
72
-
-
64349094767
-
Tissue speci fi city and the human protein interaction network
-
Bossi A, Lehner B (2009) Tissue speci fi city and the human protein interaction network. Mol Syst Biol 5:260.
-
(2009)
Mol Syst Biol
, vol.5
, pp. 260
-
-
Bossi, A.1
Lehner, B.2
-
73
-
-
67849122322
-
VisANT 3.5: Multi-scale network visualization, analysis and inference based on the gene ontology
-
Hu Z et al (2009) VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology. Nucleic Acids Res 37(Web Server Issue):W115-W121.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Hu, Z.1
-
74
-
-
38449101120
-
Integration of biological networks and gene expression data using Cytoscape
-
Cline MS et al (2007) Integration of biological networks and gene expression data using Cytoscape. Nat Protoc 2(10):2366-2382.
-
(2007)
Nat Protoc
, vol.2
, Issue.10
, pp. 2366-2382
-
-
Cline, M.S.1
-
75
-
-
75849158230
-
The gene ontology in 2010: Extensions and re fi nements
-
Gene Ontology Consortium.
-
Gene Ontology Consortium (2010) The gene ontology in 2010: extensions and re fi nements. Nucleic Acids Res 38(Database Issue): D331-D335.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
-
76
-
-
33845451529
-
Resources for integrative systems biology: From data through databases to networks and dynamic system models
-
DOI 10.1093/bib/bbl036
-
Ng A et al (2006) Resources for integrative systems biology: from data through databases to networks and dynamic system models. Brief Bioinform 7(4):318-330. (Pubitemid 44896735)
-
(2006)
Briefings in Bioinformatics
, vol.7
, Issue.4
, pp. 318-330
-
-
Ng, A.1
Bursteinas, B.2
Gao, Q.3
Mollison, E.4
Zvelebil, M.5
-
77
-
-
33750983361
-
Analysis of protein sequence and interaction data for candidate disease gene prediction
-
George RA et al (2006) Analysis of protein sequence and interaction data for candidate disease gene prediction. Nucleic Acids Res 34(19):e130.
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.19
-
-
George, R.A.1
-
78
-
-
79952196606
-
Towards prediction and prioritization of disease genes by the modularity of human phenomegenome assembled network
-
Jiang JQ, Dress AW, Chen M (2010), Towards prediction and prioritization of disease genes by the modularity of human phenomegenome assembled network. J Integr Bioinform 7(2):149.
-
(2010)
J Integr Bioinform
, vol.7
, Issue.2
, pp. 149
-
-
Jiang, J.Q.1
Dress, A.W.2
Chen, M.3
-
79
-
-
33947095027
-
A human phenome-interactome network of protein complexes implicated in genetic disorders
-
DOI 10.1038/nbt1295, PII NBT1295
-
Lage K et al (2007) A human phenome-interactome network of protein complexes implicated in genetic disorders. Nat Biotechnol 25(3):309-316. (Pubitemid 46402863)
-
(2007)
Nature Biotechnology
, vol.25
, Issue.3
, pp. 309-316
-
-
Lage, K.1
Karlberg, E.O.2
Storling, Z.M.3
Olason, P.I.4
Pedersen, A.G.5
Rigina, O.6
Hinsby, A.M.7
Tumer, Z.8
Pociot, F.9
Tommerup, N.10
Moreau, Y.11
Brunak, S.12
-
80
-
-
58049220319
-
Align human interactome with phenome to identify causative genes and networks underlying disease families
-
Wu X, Liu Q, Jiang R (2009) Align human interactome with phenome to identify causative genes and networks underlying disease families. Bioinformatics 25(1):98-104
-
(2009)
Bioinformatics
, vol.25
, Issue.1
, pp. 98-104
-
-
Wu, X.1
Liu, Q.2
Jiang, R.3
|