Knowledge-guided identification of petri net models of large biological systems

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 7207 LNAI, Issue , 2012, Pages 317-331

  Srinivasan, Ashwin ^a   Bain, Michael ^b  

^a SOUTH ASIAN UNIVERSITY   (India)

^b UNIVERSITY OF NEW SOUTH WALES   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

BACKGROUND KNOWLEDGE; COMBINATORIAL ALGORITHM; CONSTRAINT SOLVERS; EXTENDED PETRI NET; HIERARCHICAL IDENTIFICATION; LARGE SYSTEM; LINEAR TERMS; LOGICAL CONSTRAINTS; NETWORK MODELS; PETRI NET MODELS; QUALITATIVE DIFFERENTIAL EQUATIONS; QUALITATIVE REPRESENTATION; QUANTITATIVE INFORMATION; SIGNALLING NETWORK; STOCHASTICITY;

C (PROGRAMMING LANGUAGE); HIERARCHICAL SYSTEMS; INDUCTIVE LOGIC PROGRAMMING (ILP); PETRI NETS; SEARCH ENGINES; SEMANTICS;

BIOLOGICAL SYSTEMS;

EID: 84864838522     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-31951-8_27     Document Type: Conference Paper

References (14)

1. David, R., Alla, H.: Discrete, Continuous, and Hybrid Petri Nets, 2nd edn. Springer, Berlin (2010)
2. Durzinsky, M., Wagler, A., Weismantel, R.: An algorithmic framework for network reconstruction. Theoretical Computer Science 412, 2800-2815 (2011)
3. Durzinsky, M.,Wagler, A.,Weismantel, R., Marwan,W.: Automatic reconstruction of molecular and genetic networks from discrete time series data. BioSystems 93, 181-190 (2008)
4. Ideker, T., Galitski, T., Hood, L.: A new approach to decoding life: systems biology. Ann. Review of Genomics and Human Genetics 2, 343-372 (2001)
5. Junker, B.H., Schreiber, F.: Analysis of Biological Networks. Wiley, NJ (2008)
6. Koch, I., Reisig, W., Schreiber, F. (eds.): Modeling in Systems Biology: the Petri Net Approach. Springer, Berlin (2011)
7. Moore, J., Hahn, L.: Petri net modeling of high-order genetic systems using grammatical evolution. BioSystems 72, 177-186 (2003)
8. Muggleton, S.: Inverse Entailment and Progol. New Generation Computing 13, 245-286 (1995)
9. Muggleton, S., Marginean, F.: Binary refinement. In: Minker, J., McCarthy, J. (eds.) Proc. Workshop on Logic-Based Artificial Intelligence (1999)
10. Palsson, B.: Systems Biology: Properties of Reconstructed Networks. Cambridge University Press, Cambridge (2006)
11. Peterson, J.: Petri Net Theory and the Modeling of Systems. Prentice-Hall, Englewood Cliffs (1981)
12. Rauzy, A.: Guarded Transition Systems: a new States/Events Formalism for Reliability Studies. Journal of Risk and Reliability 222(4), 495-505 (2008)
13. Srinivasan, A., King, R.D.: Incremental Identification of Qualitative Models of Biological Systems using Inductive Logic Programming. Journal of Machine Learning Research 9, 1475-1533 (2008)
14. Wagler, A.: Prediction of Network Structure. In: Koch, I., Reisig, W., Schreiber, F. (eds.) Modeling in Systems Biology: the Petri Net Approach, pp. 307-336. Springer, Berlin (2011)