메뉴 건너뛰기




Volumn 116, Issue 30, 2012, Pages 8023-8030

Molecular and electronic structure of the peptide subunit of Geobacter sulfurreducens conductive pili from first principles

Author keywords

[No Author keywords available]

Indexed keywords

AROMATIC AMINO ACID; CONDUCTIVE FILAMENTS; DELOCALIZATIONS; ELECTRON CONDUCTION; ELECTRONIC BAND GAPS; GEOBACTER SULFURREDUCENS; HELICAL PEPTIDE; HOMO-LUMO GAPS; HOMOLOGY MODELS; METAL OXIDES; MOLECULAR DYNAMICS SIMULATIONS; OPTIMAL ENVIRONMENT; PEPTIDE BONDS; SPATIAL REGIONS; THERMAL FLUCTUATIONS;

EID: 84864771239     PISSN: 10895639     EISSN: 15205215     Source Type: Journal    
DOI: 10.1021/jp302232p     Document Type: Article
Times cited : (64)

References (48)
  • 2
    • 34250639301 scopus 로고    scopus 로고
    • Respiration of metal (hydr)oxides by Shewanella and Geobacter: A key role for multihaem c -type cytochromes
    • Shi, L.; Squier, T. C.; Zachara, J. M.; Fredrickson, J. K. Respiration of metal (hydr)oxides by Shewanella and Geobacter: a key role for multihaem c -type cytochromes Mol. Microbiol. 2007, 65, 12-20
    • (2007) Mol. Microbiol. , vol.65 , pp. 12-20
    • Shi, L.1    Squier, T.C.2    Zachara, J.M.3    Fredrickson, J.K.4
  • 3
    • 0028050079 scopus 로고
    • Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism
    • Caccavo, F., Jr. Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism Appl. Environ. Microbiol. 1994, 60, 3752-9
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 3752-3759
    • Caccavo Jr., F.1
  • 5
    • 21344461500 scopus 로고    scopus 로고
    • Extracellular electron transfer via microbial nanowires
    • Reguera, G. Extracellular electron transfer via microbial nanowires Nature 2005, 435, 1098-101
    • (2005) Nature , vol.435 , pp. 1098-1101
    • Reguera, G.1
  • 6
    • 42649085698 scopus 로고    scopus 로고
    • Type IV pili: E pluribus unum ?
    • Pelicic, V. Type IV pili: e pluribus unum ? Mol. Microbiol. 2008, 68, 827-37
    • (2008) Mol. Microbiol. , vol.68 , pp. 827-837
    • Pelicic, V.1
  • 7
    • 33751014053 scopus 로고    scopus 로고
    • Biofilm and nanowire production lead to increased current in microbial fuel cells
    • Reguera, G. Biofilm and nanowire production lead to increased current in microbial fuel cells Appl. Environ. Microbiol. 2006, 72, 7345-7348
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 7345-7348
    • Reguera, G.1
  • 8
  • 9
    • 33947400655 scopus 로고    scopus 로고
    • Possible nonconductive role of Geobacter sulfurreducens pilus nanowires in biofilm formation
    • Reguera, G.; Pollina, R. B.; Nicoll, J. S.; Lovley, D. R. Possible nonconductive role of Geobacter sulfurreducens pilus nanowires in biofilm formation J. Bacteriol. 2007, 189, 2125-7
    • (2007) J. Bacteriol. , vol.189 , pp. 2125-2127
    • Reguera, G.1    Pollina, R.B.2    Nicoll, J.S.3    Lovley, D.R.4
  • 10
    • 84555178484 scopus 로고    scopus 로고
    • Electronic properties of conductive pili of the metal-reducing bacterium Geobacter sulfurreducens probed by scanning tunneling microscopy
    • Veazey, J. P.; Reguera, G.; Tessmer, S. H. Electronic properties of conductive pili of the metal-reducing bacterium Geobacter sulfurreducens probed by scanning tunneling microscopy Phys. Rev. E 2011, 84, 060901
    • (2011) Phys. Rev. e , vol.84 , pp. 060901
    • Veazey, J.P.1    Reguera, G.2    Tessmer, S.H.3
  • 11
    • 84861371422 scopus 로고    scopus 로고
    • Two isoforms of Geobacter sulfurreducens PilA have distinct roles in pilus biogenesis, cytochrome localization, extracellular electron transfer, and biofilm formation
    • Richter, L. V.; Sandler, S. J.; Weis, R. M. Two isoforms of Geobacter sulfurreducens PilA have distinct roles in pilus biogenesis, cytochrome localization, extracellular electron transfer, and biofilm formation J. Bacteriol. 2012, 194, 2551-63
    • (2012) J. Bacteriol. , vol.194 , pp. 2551-2563
    • Richter, L.V.1    Sandler, S.J.2    Weis, R.M.3
  • 12
    • 2442589577 scopus 로고    scopus 로고
    • Type IV pilus structure and bacterial pathogenicity
    • Craig, L.; Pique, M. E.; Tainer, J. A. Type IV pilus structure and bacterial pathogenicity Nat. Rev. Microbiol. 2004, 2, 363-78
    • (2004) Nat. Rev. Microbiol. , vol.2 , pp. 363-378
    • Craig, L.1    Pique, M.E.2    Tainer, J.A.3
  • 13
    • 47249096654 scopus 로고    scopus 로고
    • Intra-molecular electron transfer in proteins
    • Brittain, T. Intra-molecular electron transfer in proteins Protein Pept. Lett. 2008, 15, 556-61
    • (2008) Protein Pept. Lett. , vol.15 , pp. 556-561
    • Brittain, T.1
  • 14
    • 43849113277 scopus 로고    scopus 로고
    • Influence of amino acid side chains on long-distance electron transfer in peptides: Electron hopping via "stepping stones"
    • Cordes, M. Influence of amino acid side chains on long-distance electron transfer in peptides: electron hopping via "stepping stones" Angew. Chem., Int. Ed. Engl. 2008, 47, 3461-3
    • (2008) Angew. Chem., Int. Ed. Engl. , vol.47 , pp. 3461-3463
    • Cordes, M.1
  • 15
    • 1442328094 scopus 로고    scopus 로고
    • Electron tunneling through proteins
    • Gray, H. B.; Winkler, J. R. Electron tunneling through proteins Q. Rev. Biophys. 2003, 36, 341-72
    • (2003) Q. Rev. Biophys. , vol.36 , pp. 341-372
    • Gray, H.B.1    Winkler, J.R.2
  • 16
    • 55549100984 scopus 로고    scopus 로고
    • Electron hopping through the 15 Å triple tryptophan molecular wire in DNA photolyase occurs within 30 ps
    • Lukacs, A.; Eker, A. P.; Byrdin, M.; Brettel, K.; Vos, M. H. Electron hopping through the 15 Å triple tryptophan molecular wire in DNA photolyase occurs within 30 ps J. Am. Chem. Soc. 2008, 130, 14394-5
    • (2008) J. Am. Chem. Soc. , vol.130 , pp. 14394-14395
    • Lukacs, A.1    Eker, A.P.2    Byrdin, M.3    Brettel, K.4    Vos, M.H.5
  • 17
    • 0034026215 scopus 로고    scopus 로고
    • Electron tunneling pathways in proteins
    • Winkler, J. R. Electron tunneling pathways in proteins Curr. Opin. Chem. Biol. 2000, 4, 192-8
    • (2000) Curr. Opin. Chem. Biol. , vol.4 , pp. 192-198
    • Winkler, J.R.1
  • 18
    • 0026434593 scopus 로고
    • Protein electron transfer rates set by the bridging secondary and tertiary structure
    • Beratan, D. N.; Betts, J. N.; Onuchic, J. N. Protein electron transfer rates set by the bridging secondary and tertiary structure Science 1991, 252, 1285-8
    • (1991) Science , vol.252 , pp. 1285-1288
    • Beratan, D.N.1    Betts, J.N.2    Onuchic, J.N.3
  • 21
    • 46449093308 scopus 로고    scopus 로고
    • Tryptophan-accelerated electron flow through proteins
    • Shih, C. Tryptophan-accelerated electron flow through proteins Science 2008, 320, 1760-2
    • (2008) Science , vol.320 , pp. 1760-1762
    • Shih, C.1
  • 22
    • 41149090755 scopus 로고    scopus 로고
    • Molecular dipole engineering: New aspects of molecular dipoles in molecular architecture and their functions
    • Kimura, S. Molecular dipole engineering: new aspects of molecular dipoles in molecular architecture and their functions. Org. Biomol. Chem. 6 (2008).
    • (2008) Org. Biomol. Chem. , vol.6
    • Kimura, S.1
  • 23
    • 30544439115 scopus 로고    scopus 로고
    • Electrical behavior of molecular junctions incorporating alpha-helical peptide
    • Sek, S.; Swiatek, K.; Misicka, A. Electrical behavior of molecular junctions incorporating alpha-helical peptide J. Phys. Chem. B 2005, 109, 23121-4
    • (2005) J. Phys. Chem. B , vol.109 , pp. 23121-23124
    • Sek, S.1    Swiatek, K.2    Misicka, A.3
  • 24
    • 41949117894 scopus 로고    scopus 로고
    • Type IV pili: Paradoxes in form and function
    • Craig, L.; Li, J. Type IV pili: paradoxes in form and function Curr. Opin. Struct. Biol. 2008, 18, 267-77
    • (2008) Curr. Opin. Struct. Biol. , vol.18 , pp. 267-277
    • Craig, L.1    Li, J.2
  • 25
    • 0242500928 scopus 로고    scopus 로고
    • Distance dependence of electron transfer across peptides with different secondary structures: The role of peptide energetics and electronic Coupling
    • Shin, Y.-g. K.; Newton, M. D.; Isied, S. S. Distance dependence of electron transfer across peptides with different secondary structures: The role of peptide energetics and electronic Coupling J. Am. Chem. Soc. 2003, 125, 3722-3732
    • (2003) J. Am. Chem. Soc. , vol.125 , pp. 3722-3732
    • Shin, Y.-G.K.1    Newton, M.D.2    Isied, S.S.3
  • 26
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
    • Guex, N.; Peitsch, M. C. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling Electrophoresis 1997, 18, 2714-23
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 27
    • 12444272635 scopus 로고    scopus 로고
    • Type IV pilin structure and assembly: X-ray and em analyses of Vibrio cholerae toxin-coregulated pilus and Pseudomonas aeruginosa PAK pilin
    • Craig, L. Type IV pilin structure and assembly: X-ray and EM analyses of Vibrio cholerae toxin-coregulated pilus and Pseudomonas aeruginosa PAK pilin Mol. Cell 2003, 11, 1139-50
    • (2003) Mol. Cell , vol.11 , pp. 1139-1150
    • Craig, L.1
  • 28
    • 33645941402 scopus 로고
    • The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin
    • Jorgensen, W. L.; Tirado-Rives, J. The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin J. Am. Chem. Soc. 1988, 110, 1657
    • (1988) J. Am. Chem. Soc. , vol.110 , pp. 1657
    • Jorgensen, W.L.1    Tirado-Rives, J.2
  • 29
    • 46249092554 scopus 로고    scopus 로고
    • GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation
    • Hess, B.; Kutzner, C.; van der Spoel, D.; Lindahl, E. GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation J. Chem. Theory Comput. 2008, 4, 435-447
    • (2008) J. Chem. Theory Comput. , vol.4 , pp. 435-447
    • Hess, B.1    Kutzner, C.2    Van Der Spoel, D.3    Lindahl, E.4
  • 31
    • 4243943295 scopus 로고    scopus 로고
    • Generalized Gradient Approximation made simple
    • Perdew, J. P.; Burke, K.; Ernzerhof, M. Generalized Gradient Approximation made simple Phys. Rev. Lett. 1996, 77, 3865-3868
    • (1996) Phys. Rev. Lett. , vol.77 , pp. 3865-3868
    • Perdew, J.P.1    Burke, K.2    Ernzerhof, M.3
  • 32
    • 33646658147 scopus 로고
    • Efficient pseudopotentials for plane-wave calculations. II. Operators for fast iterative diagonalization
    • Troullier, N.; Martins, J. L. Efficient pseudopotentials for plane-wave calculations. II. Operators for fast iterative diagonalization Phys. Rev. B 1991, 43, 8861-8869
    • (1991) Phys. Rev. B , vol.43 , pp. 8861-8869
    • Troullier, N.1    Martins, J.L.2
  • 33
    • 0001161603 scopus 로고
    • Efficacious form for model pseudopotentials
    • Kleinman, L.; Bylander, D. M. Efficacious form for model pseudopotentials Phys. Rev. Lett. 1982, 48, 1425-1428
    • (1982) Phys. Rev. Lett. , vol.48 , pp. 1425-1428
    • Kleinman, L.1    Bylander, D.M.2
  • 35
    • 0037171091 scopus 로고    scopus 로고
    • The SIESTA method for ab initio order-N materials simulation
    • Soler, J. M. The SIESTA method for ab initio order-N materials simulation J. Phys.: Condens. Matter 2002, 14, 2745
    • (2002) J. Phys.: Condens. Matter , vol.14 , pp. 2745
    • Soler, J.M.1
  • 36
    • 4444325332 scopus 로고    scopus 로고
    • Crystallographic analysis of the Pseudomonas aeruginosa strain K122-4 monomeric pilin reveals a conserved receptor-binding architecture
    • Audette, G. F.; Irvin, R. T.; Hazes, B. Crystallographic analysis of the Pseudomonas aeruginosa strain K122-4 monomeric pilin reveals a conserved receptor-binding architecture Biochemistry 2004, 43, 11427-35
    • (2004) Biochemistry , vol.43 , pp. 11427-11435
    • Audette, G.F.1    Irvin, R.T.2    Hazes, B.3
  • 37
    • 0034674160 scopus 로고    scopus 로고
    • Crystal structure of Pseudomonas aeruginosa PAK pilin suggests a main-chain-dominated mode of receptor binding
    • Hazes, B.; Sastry, P. A.; Hayakawa, K.; Read, R. J.; Irvin, R. T. Crystal structure of Pseudomonas aeruginosa PAK pilin suggests a main-chain-dominated mode of receptor binding J. Mol. Biol. 2000, 299, 1005-17
    • (2000) J. Mol. Biol. , vol.299 , pp. 1005-1017
    • Hazes, B.1    Sastry, P.A.2    Hayakawa, K.3    Read, R.J.4    Irvin, R.T.5
  • 38
    • 34548565833 scopus 로고    scopus 로고
    • Pseudomonas aeruginosa Type IV pilus expression in Neisseria gonorrhoeae: Effects of pilin subunit composition on function and organelle dynamics
    • Winther-Larsen, H. C. Pseudomonas aeruginosa Type IV pilus expression in Neisseria gonorrhoeae: effects of pilin subunit composition on function and organelle dynamics J. Bacteriol. 2007, 189, 6676-85
    • (2007) J. Bacteriol. , vol.189 , pp. 6676-6685
    • Winther-Larsen, H.C.1
  • 39
    • 33747872707 scopus 로고    scopus 로고
    • Type IV pilus structure by cryo-electron microscopy and crystallography: Implications for pilus assembly and functions
    • Craig, L. Type IV pilus structure by cryo-electron microscopy and crystallography: implications for pilus assembly and functions Mol. Cell 2006, 23, 651-62
    • (2006) Mol. Cell , vol.23 , pp. 651-662
    • Craig, L.1
  • 40
    • 24744444691 scopus 로고    scopus 로고
    • Peptide electron transfer: More questions than answers
    • Long, Y. T.; Abu-Irhayem, E.; Kraatz, H. B. Peptide electron transfer: more questions than answers Chem.-Eur. J. 2005, 11, 5186-94
    • (2005) Chem.-Eur. J. , vol.11 , pp. 5186-5194
    • Long, Y.T.1    Abu-Irhayem, E.2    Kraatz, H.B.3
  • 41
    • 0029931828 scopus 로고    scopus 로고
    • Effect of the electric field generated by the helix dipole on photoinduced intramolecular electron transfer in dichromophoric α-helical peptides
    • Galoppini, E.; Fox, M. A. Effect of the electric field generated by the helix dipole on photoinduced intramolecular electron transfer in dichromophoric α-helical peptides J. Am. Chem. Soc. 1996, 118, 2299-2300
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 2299-2300
    • Galoppini, E.1    Fox, M.A.2
  • 43
    • 65949118908 scopus 로고    scopus 로고
    • Electron relay race in peptides
    • Giese, B. Electron relay race in peptides J. Org. Chem. 2009, 74, 3621-5
    • (2009) J. Org. Chem. , vol.74 , pp. 3621-3625
    • Giese, B.1
  • 44
    • 79951800444 scopus 로고    scopus 로고
    • Electron transfer in peptides: The influence of charged amino acids
    • Gao, J. Electron transfer in peptides: the influence of charged amino acids Angew. Chem., Int. Ed. Engl. 2011, 50, 1926-30
    • (2011) Angew. Chem., Int. Ed. Engl. , vol.50 , pp. 1926-1930
    • Gao, J.1
  • 45
    • 0031914987 scopus 로고    scopus 로고
    • Consequences of the loss of O-linked glycosylation of meningococcal type IV pilin on piliation and pilus-mediated adhesion
    • Marceau, M.; Forest, K.; Beretti, J. L.; Tainer, J.; Nassif, X. Consequences of the loss of O-linked glycosylation of meningococcal type IV pilin on piliation and pilus-mediated adhesion Mol. Microbiol. 1998, 27, 705-15
    • (1998) Mol. Microbiol. , vol.27 , pp. 705-715
    • Marceau, M.1    Forest, K.2    Beretti, J.L.3    Tainer, J.4    Nassif, X.5
  • 46
    • 0037469276 scopus 로고    scopus 로고
    • The genetics of glycosylation in Gram-negative bacteria
    • Power, P. M.; Jennings, M. P. The genetics of glycosylation in Gram-negative bacteria FEMS Microbiol. Lett. 2003, 218, 211-22
    • (2003) FEMS Microbiol. Lett. , vol.218 , pp. 211-222
    • Power, P.M.1    Jennings, M.P.2
  • 47
    • 0030918282 scopus 로고    scopus 로고
    • Post-translational modifications of meningococcal pili. Identification of common substituents: Glycans and alpha-glycerophosphate - A review
    • Virji, M. Post-translational modifications of meningococcal pili. Identification of common substituents: glycans and alpha-glycerophosphate - a review Gene 1997, 192, 141-7
    • (1997) Gene , vol.192 , pp. 141-147
    • Virji, M.1
  • 48
    • 0345714747 scopus 로고    scopus 로고
    • Identification and characterization of pptA: A gene involved in the phase-variable expression of phosphorylcholine on pili of Neisseria meningitidis
    • Warren, M. J.; Jennings, M. P. Identification and characterization of pptA: a gene involved in the phase-variable expression of phosphorylcholine on pili of Neisseria meningitidis Infect. Immunol. 2003, 71, 6892-8
    • (2003) Infect. Immunol. , vol.71 , pp. 6892-6898
    • Warren, M.J.1    Jennings, M.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.