메뉴 건너뛰기




Volumn 7, Issue 8, 2012, Pages 950-960

IDN2 has a role downstream of siRNA formation in RNA-directed DNA methylation

Author keywords

Arabidopsis thaliana; At3g23780; At3g48670; IDN2; Mutagenesis; NRPD2a NRPE2a; RNA directed DNA methylation; Short interfering RNA; Transcriptional gene silencing

Indexed keywords

CYTOSINE; DNA; KANAMYCIN; NOPALINE; RNA; RNA POLYMERASE; SMALL INTERFERING RNA;

EID: 84864676590     PISSN: 15592294     EISSN: 15592308     Source Type: Journal    
DOI: 10.4161/epi.21237     Document Type: Article
Times cited : (30)

References (60)
  • 1
    • 20444426255 scopus 로고    scopus 로고
    • Paramutation: An encounter leaving a lasting impression
    • PMID:15949762
    • Stam M, Mittelsten Scheid O. Paramutation: an encounter leaving a lasting impression. Trends Plant Sci 2005; 10:283-290; PMID:15949762; http://dx.doi.org/10.1016/j.tplants.2005.04.009.
    • (2005) Trends Plant Sci , vol.10 , pp. 283-290
    • Stam, M.1    Mittelsten, S.O.2
  • 2
    • 33947303168 scopus 로고    scopus 로고
    • Transposable elements and the epigenetic regulation of the genome
    • PMID:17363976
    • Slotkin RK, Martienssen R. Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 2007; 8:272-285; PMID:17363976; http://dx.doi.org/10.1038/nrg2072.
    • (2007) Nat Rev Genet , vol.8 , pp. 272-285
    • Slotkin, R.K.1    Martienssen, R.2
  • 3
    • 40649084031 scopus 로고    scopus 로고
    • Rapid quantification of global DNA methylation by isocratic cation exchange high-performance liquid chromatography
    • PMID:18249178
    • Rozhon W, Baubec T, Mayerhofer J, Mittelsten Scheid O, Jonak C. Rapid quantification of global DNA methylation by isocratic cation exchange high-performance liquid chromatography. Anal Biochem 2008; 375:354-360; PMID:18249178; http://dx.doi.org/10.1016/j.ab.2008.01.001.
    • (2008) Anal Biochem , vol.375 , pp. 354-360
    • Rozhon, W.1    Baubec, T.2    Mayerhofer, J.3    Mittelsten, S.O.4    Jonak, C.5
  • 4
    • 40749109894 scopus 로고    scopus 로고
    • Shotgun bisulphate sequencing of the Arabidopsis genome reveals DNA methylation patterning
    • PMID:18278030
    • Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, et al. Shotgun bisulphate sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 2008; 452:215-219; PMID:18278030; http://dx.doi.org/10.1038/nature06745.
    • (2008) Nature , vol.452 , pp. 215-219
    • Cokus, S.J.1    Feng, S.2    Zhang, X.3    Chen, Z.4    Merriman, B.5    Haudenschild, C.D.6
  • 5
    • 0034950442 scopus 로고    scopus 로고
    • Site specificity of the Arabidopsis METI DNA methyltransferase demonstrated through hypermethylation of the superman locus
    • PMID:11442057
    • Kishimoto N, Sakai H, Jackson J, Jacobsen SE, Meyerowitz EM, Dennis ES, et al. Site specificity of the Arabidopsis METI DNA methyltransferase demonstrated through hypermethylation of the superman locus. Plant Mol Biol 2001; 46:171-13; PMID:11442057; http://dx.doi.org/10.1023/A:1010636222327.
    • (2001) Plant Mol Biol , vol.46 , pp. 171-173
    • Kishimoto, N.1    Sakai, H.2    Jackson, J.3    Jacobsen, S.E.4    Meyerowitz, E.M.5    Dennis, E.S.6
  • 6
    • 0031832432 scopus 로고    scopus 로고
    • A DNA methyltransferase homolog with a chromodomain exists in multiple polymorphic forms in Arabidopsis
    • PMID:9584105
    • Henikoff S, Comai L. A DNA methyltransferase homolog with a chromodomain exists in multiple polymorphic forms in Arabidopsis. Genetics 1998; 149:307-318; PMID:9584105.
    • (1998) Genetics , vol.149 , pp. 307-318
    • Henikoff, S.1    Comai, L.2
  • 7
    • 0035874929 scopus 로고    scopus 로고
    • Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
    • PMID:11349138
    • Lindroth AM, Cao X, Jackson JP, Zilberman D, McCallum CM, Henikoff S, et al. Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation. Science 2001; 292:2077-2080; PMID:11349138; http://dx.doi.org/10.1126/science.1059745.
    • (2001) Science , vol.292 , pp. 2077-2080
    • Lindroth, A.M.1    Cao, X.2    Jackson, J.P.3    Zilberman, D.4    McCallum, C.M.5    Henikoff, S.6
  • 8
    • 0037058968 scopus 로고    scopus 로고
    • Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes
    • PMID:12151602
    • Cao X, Jacobsen SE. Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proc Natl Acad Sci U S A 2002; 99(Suppl 4):16491-16498; PMID:12151602; http://dx.doi.org/10.1073/pnas.162371599.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , Issue.SUPPL. 4 , pp. 16491-16498
    • Cao, X.1    Jacobsen, S.E.2
  • 9
    • 0037046810 scopus 로고    scopus 로고
    • Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing
    • PMID:12121623
    • Cao X, Jacobsen SE. Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr Biol 2002; 12:1138-1144; PMID:12121623; http://dx.doi.org/10.1016/S0960-9822(02)00925-9.
    • (2002) Curr Biol , vol.12 , pp. 1138-1144
    • Cao, X.1    Jacobsen, S.E.2
  • 10
    • 0347033302 scopus 로고    scopus 로고
    • Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation
    • PMID:14680640
    • Cao X, Aufsatz W, Zilberman D, Mette MF, Huang MS, Matzke M, et al. Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr Biol 2003; 13:2212-2217; PMID:14680640; http://dx.doi.org/10.1016/j.cub.2003.11.052.
    • (2003) Curr Biol , vol.13 , pp. 2212-2217
    • Cao, X.1    Aufsatz, W.2    Zilberman, D.3    Mette, M.F.4    Huang, M.S.5    Matzke, M.6
  • 11
    • 84862777814 scopus 로고    scopus 로고
    • A role for small RNAs in DNA double-strand break repair
    • PMID:22445173
    • Wei W, Ba Z, Gao M, Wu Y, Ma Y, Amiard S, et al. A role for small RNAs in DNA double-strand break repair. Cell 2012; 149:101-112; PMID:22445173; http://dx.doi.org/10.1016/j.cell.2012.03.002.
    • (2012) Cell , vol.149 , pp. 101-112
    • Wei, W.1    Ba, Z.2    Gao, M.3    Wu, Y.4    Ma, Y.5    Amiard, S.6
  • 12
    • 80655149111 scopus 로고    scopus 로고
    • RNA silencing pathways of plants: Silencing and its suppression by plant DNA viruses
    • PMID:21683815
    • Hohn T, Vazquez F. RNA silencing pathways of plants: silencing and its suppression by plant DNA viruses. Biochim Biophys Acta 2011; 1809:588-600; PMID:21683815.
    • (2011) Biochim Biophys Acta , vol.1809 , pp. 588-600
    • Hohn, T.1    Vazquez, F.2
  • 13
    • 67650252226 scopus 로고    scopus 로고
    • RNA-directed DNA methylation and demethylation in plants
    • PMID:19381459
    • Chinnusamy V, Zhu JK. RNA-directed DNA methylation and demethylation in plants. Sci China C Life Sci 2009; 52:331-343; PMID:19381459; http://dx.doi.org/10.1007/s11427-009-0052-1.
    • (2009) Sci China C Life Sci , vol.52 , pp. 331-343
    • Chinnusamy, V.1    Zhu, J.K.2
  • 14
    • 65249148019 scopus 로고    scopus 로고
    • RNA-mediated chromatin-based silencing in plants
    • PMID:19243928
    • Matzke M, Kanno T, Daxinger L, Huettel B, Matzke AJ. RNA-mediated chromatin-based silencing in plants. Curr Opin Cell Biol 2009; 21:367-376; PMID:19243928; http://dx.doi.org/10.1016/j.ceb.2009.01.025.
    • (2009) Curr Opin Cell Biol , vol.21 , pp. 367-376
    • Matzke, M.1    Kanno, T.2    Daxinger, L.3    Huettel, B.4    Matzke, A.J.5
  • 15
    • 77249170184 scopus 로고    scopus 로고
    • Establishing, maintaining and modifying DNA methylation patterns in plants and animals
    • PMID:20142834
    • Law JA, Jacobsen SE. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet 2010; 11:204-220; PMID:20142834; http://dx.doi.org/10.1038/nrg2719.
    • (2010) Nat Rev Genet , vol.11 , pp. 204-220
    • Law, J.A.1    Jacobsen, S.E.2
  • 16
    • 79960716754 scopus 로고    scopus 로고
    • Multisubunit RNA polymerases IV and V: Purveyors of non-coding RNA for plant gene silencing
    • PMID:21779025
    • Haag JR, Pikaard CS. Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing. Nat Rev Mol Cell Biol 2011; 12:483-492; PMID:21779025; http://dx.doi.org/10.1038/nrm3152.
    • (2011) Nat Rev Mol Cell Biol , vol.12 , pp. 483-492
    • Haag, J.R.1    Pikaard, C.S.2
  • 17
    • 14844295120 scopus 로고    scopus 로고
    • RNA polymerase IV directs silencing of endogenous DNA
    • PMID:15692015
    • Herr AJ, Jensen MB, Dalmay T, Baulcombe DC. RNA polymerase IV directs silencing of endogenous DNA. Science 2005; 308:118-120; PMID:15692015; http://dx.doi.org/10.1126/science.1106910.
    • (2005) Science , vol.308 , pp. 118-120
    • Herr, A.J.1    Jensen, M.B.2    Dalmay, T.3    Baulcombe, D.C.4
  • 18
    • 14844302397 scopus 로고    scopus 로고
    • Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
    • PMID:15766525
    • Onodera Y, Haag JR, Ream T, Costa Nunes P, Pontes O, Pikaard CS. Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 2005; 120:613-622; PMID:15766525; http://dx.doi.org/10.1016/j.cell.2005.02.007.
    • (2005) Cell , vol.120 , pp. 613-622
    • Onodera, Y.1    Haag, J.R.2    Ream, T.3    Costa, N.P.4    Pontes, O.5    Pikaard, C.S.6
  • 19
    • 80053915058 scopus 로고    scopus 로고
    • An atypical epigenetic mechanism affects uniparental expression of Pol IV-dependent siRNAs
    • PMID:22003406
    • Mosher RA, Tan EH, Shin J, Fischer RL, Pikaard CS, Baulcombe DC. An atypical epigenetic mechanism affects uniparental expression of Pol IV-dependent siRNAs. PLoS One 2011; 6:e25756; PMID:22003406; http://dx.doi.org/10.1371/journal.pone.0025756.
    • (2011) PLoS One , vol.6
    • Mosher, R.A.1    Tan, E.H.2    Shin, J.3    Fischer, R.L.4    Pikaard, C.S.5    Baulcombe, D.C.6
  • 20
    • 19344374219 scopus 로고    scopus 로고
    • Genetic and functional diversification of small RNA pathways in plants
    • PMID:15024409
    • Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, et al. Genetic and functional diversification of small RNA pathways in plants. PLoS Biol 2004; 2:E104; PMID:15024409; http://dx.doi.org/10.1371/journal.pbio.0020104.
    • (2004) PLoS Biol , vol.2
    • Xie, Z.1    Johansen, L.K.2    Gustafson, A.M.3    Kasschau, K.D.4    Lellis, A.D.5    Zilberman, D.6
  • 21
    • 58149347080 scopus 로고    scopus 로고
    • A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation
    • PMID:19078964
    • Daxinger L, Kanno T, Bucher E, van der Winden J, Naumann U, Matzke AJ, et al. A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation. EMBO J 2009; 28:48-57; PMID:19078964; http://dx.doi.org/10.1038/emboj.2008.260.
    • (2009) EMBO J , vol.28 , pp. 48-57
    • Daxinger, L.1    Kanno, T.2    Bucher, E.3    van der Winden, J.4    Naumann, U.5    Matzke, A.J.6
  • 22
    • 32644454064 scopus 로고    scopus 로고
    • HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2' OH of the 3' terminal nucleotide
    • PMID:16449203
    • Yang Z, Ebright YW, Yu B, Chen X. HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2' OH of the 3' terminal nucleotide. Nucleic Acids Res 2006; 34:667-675; PMID:16449203; http://dx.doi.org/10.1093/nar/gkj474.
    • (2006) Nucleic Acids Res , vol.34 , pp. 667-675
    • Yang, Z.1    Ebright, Y.W.2    Yu, B.3    Chen, X.4
  • 23
    • 77957232609 scopus 로고    scopus 로고
    • SiRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis
    • PMID:20448024
    • Yu B, Bi L, Zhai J, Agarwal M, Li S, Wu Q, et al. siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis. Nucleic Acids Res 2010; 38:5844-5850; PMID:20448024; http://dx.doi.org/10.1093/nar/gkq348.
    • (2010) Nucleic Acids Res , vol.38 , pp. 5844-5850
    • Yu, B.1    Bi, L.2    Zhai, J.3    Agarwal, M.4    Li, S.5    Wu, Q.6
  • 24
    • 0037474126 scopus 로고    scopus 로고
    • ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
    • PMID:12522258
    • Zilberman D, Cao X, Jacobsen SE. ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science 2003; 299:716-719; PMID:12522258; http://dx.doi.org/10.1126/science.1079695.
    • (2003) Science , vol.299 , pp. 716-719
    • Zilberman, D.1    Cao, X.2    Jacobsen, S.E.3
  • 25
    • 33745699398 scopus 로고    scopus 로고
    • An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana
    • PMID:16839879
    • Li CF, Pontes O, El-Shami M, Henderson IR, Bernatavichute YV, Chan SW, et al. An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell 2006; 126:93-106; PMID:16839879; http://dx.doi.org/10.1016/j.cell.2006.05.032.
    • (2006) Cell , vol.126 , pp. 93-106
    • Li, C.F.1    Pontes, O.2    El-Shami, M.3    Henderson, I.R.4    Bernatavichute, Y.V.5    Chan, S.W.6
  • 26
    • 33947586544 scopus 로고    scopus 로고
    • Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing
    • PMID:17332757
    • Zheng X, Zhu J, Kapoor A, Zhu JK. Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing. EMBO J 2007; 26:1691-1701; PMID:17332757; http://dx.doi.org/10.1038/sj.emboj.7601603.
    • (2007) EMBO J , vol.26 , pp. 1691-1701
    • Zheng, X.1    Zhu, J.2    Kapoor, A.3    Zhu, J.K.4
  • 27
    • 77950342461 scopus 로고    scopus 로고
    • The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci
    • PMID:20173091
    • Havecker ER, Wallbridge LM, Hardcastle TJ, Bush MS, Kelly KA, Dunn RM, et al. The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci. Plant Cell 2010; 22:321-334; PMID:20173091; http://dx.doi.org/10.1105/tpc.109.072199.
    • (2010) Plant Cell , vol.22 , pp. 321-334
    • Havecker, E.R.1    Wallbridge, L.M.2    Hardcastle, T.J.3    Bush, M.S.4    Kelly, K.A.5    Dunn, R.M.6
  • 28
    • 80053587336 scopus 로고    scopus 로고
    • AGO6 functions in RNAmediated transcriptional gene silencing in shoot and root meristems in Arabidopsis thaliana
    • PMID:21998686
    • Eun C, Lorkovic ZJ, Naumann U, Long Q, Havecker ER, Simon SA, et al. AGO6 functions in RNAmediated transcriptional gene silencing in shoot and root meristems in Arabidopsis thaliana. PLoS One 2011; 6:e25730; PMID:21998686; http://dx.doi.org/10.1371/journal.pone.0025730.
    • (2011) PLoS One , vol.6
    • Eun, C.1    Lorkovic, Z.J.2    Naumann, U.3    Long, Q.4    Havecker, E.R.5    Simon, S.A.6
  • 29
    • 22844447304 scopus 로고    scopus 로고
    • Atypical RNA polymerase subunits required for RNA-directed DNA methylation
    • PMID:15924141
    • Kanno T, Huettel B, Mette MF, Aufsatz W, Jaligot E, Daxinger L, et al. Atypical RNA polymerase subunits required for RNA-directed DNA methylation. Nat Genet 2005; 37:761-765; PMID:15924141; http://dx.doi.org/10.1038/ng1580.
    • (2005) Nat Genet , vol.37 , pp. 761-765
    • Kanno, T.1    Huettel, B.2    Mette, M.F.3    Aufsatz, W.4    Jaligot, E.5    Daxinger, L.6
  • 30
    • 58649104893 scopus 로고    scopus 로고
    • Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II
    • PMID:19110459
    • Ream TS, Haag JR, Wierzbicki AT, Nicora CD, Norbeck AD, Zhu JK, et al. Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II. Mol Cell 2009; 33:192-203; PMID:19110459; http://dx.doi.org/10.1016/j.molcel.2008.12.015.
    • (2009) Mol Cell , vol.33 , pp. 192-203
    • Ream, T.S.1    Haag, J.R.2    Wierzbicki, A.T.3    Nicora, C.D.4    Norbeck, A.D.5    Zhu, J.K.6
  • 31
    • 55449131096 scopus 로고    scopus 로고
    • Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes
    • PMID:19013275
    • Wierzbicki AT, Haag JR, Pikaard CS. Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell 2008; 135:635-648; PMID:19013275; http://dx.doi.org/10.1016/j.cell.2008.09.035.
    • (2008) Cell , vol.135 , pp. 635-648
    • Wierzbicki, A.T.1    Haag, J.R.2    Pikaard, C.S.3
  • 32
    • 58849120615 scopus 로고    scopus 로고
    • PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit
    • PMID:19141635
    • Lahmy S, Pontier D, Cavel E, Vega D, El-Shami M, Kanno T, et al. PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit. Proc Natl Acad Sci U S A 2009; 106:941-946; PMID:19141635; http://dx.doi.org/10.1073/pnas.0810310106.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 941-946
    • Lahmy, S.1    Pontier, D.2    Cavel, E.3    Vega, D.4    El-Shami, M.5    Kanno, T.6
  • 33
    • 79953189712 scopus 로고    scopus 로고
    • Genetic evidence that DNA methyltransferase DRM2 has a direct catalytic role in RNAdirected DNA methylation in Arabidopsis thaliana
    • PMID:21212233
    • Naumann U, Daxinger L, Kanno T, Eun C, Long Q, Lorkovic ZJ, et al. Genetic evidence that DNA methyltransferase DRM2 has a direct catalytic role in RNAdirected DNA methylation in Arabidopsis thaliana. Genetics 2011; 187:977-979; PMID:21212233; http://dx.doi.org/10.1534/genetics.110.125401.
    • (2011) Genetics , vol.187 , pp. 977-979
    • Naumann, U.1    Daxinger, L.2    Kanno, T.3    Eun, C.4    Long, Q.5    Lorkovic, Z.J.6
  • 34
  • 35
    • 37249083971 scopus 로고    scopus 로고
    • Local DNA features affect RNA-directed transcriptional gene silencing and DNA methylation
    • PMID:17971044
    • Fischer U, Kuhlmann M, Pecinka A, Schmidt R, Mette MF. Local DNA features affect RNA-directed transcriptional gene silencing and DNA methylation. Plant J 2008; 53:1-10; PMID:17971044; http://dx.doi.org/10.1111/j.1365-313X.2007.03311.x.
    • (2008) Plant J , vol.53 , pp. 1-10
    • Fischer, U.1    Kuhlmann, M.2    Pecinka, A.3    Schmidt, R.4    Mette, M.F.5
  • 36
    • 77951824122 scopus 로고    scopus 로고
    • An SGS3-like protein functions in RNA-directed DNA methylation and transcriptional gene silencing in Arabidopsis
    • PMID:20059743
    • Zheng Z, Xing Y, He XJ, Li W, Hu Y, Yadav SK, et al. An SGS3-like protein functions in RNA-directed DNA methylation and transcriptional gene silencing in Arabidopsis. Plant J 2010; 62:92-99; PMID:20059743; http://dx.doi.org/10.1111/j.1365-313X.2010.04130.x.
    • (2010) Plant J , vol.62 , pp. 92-99
    • Zheng, Z.1    Xing, Y.2    He, X.J.3    Li, W.4    Hu, Y.5    Yadav, S.K.6
  • 37
    • 84861527038 scopus 로고    scopus 로고
    • Involvement of a GHKL ATPase in RNA-Directed DNA Methylation in Arabidopsis thaliana
    • PMID:22560611
    • Lorković ZJ, Naumann U, Matzke AJ, Matzke M. Involvement of a GHKL ATPase in RNA-Directed DNA Methylation in Arabidopsis thaliana. Curr Biol 2012; 22:933-938; PMID:22560611; http://dx.doi.org/10.1016/j.cub.2012.03.061.
    • (2012) Curr Biol , vol.22 , pp. 933-938
    • Lorković, Z.J.1    Naumann, U.2    Matzke, A.J.3    Matzke, M.4
  • 38
    • 71449098588 scopus 로고    scopus 로고
    • IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana
    • PMID:19935683
    • Ausin I, Mockler TC, Chory J, Jacobsen SE. IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana. Nat Struct Mol Biol 2009; 16:1328-1330; PMID:19935683; http://dx.doi.org/10.1038/nsmb.1690.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 1328-1330
    • Ausin, I.1    Mockler, T.C.2    Chory, J.3    Jacobsen, S.E.4
  • 39
    • 84861564518 scopus 로고    scopus 로고
    • A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation
    • PMID:22302148
    • Xie M, Ren G, Costa-Nunes P, Pontes O, Yu B. A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation. Nucleic Acids Res 2012; 40:4422-4431; PMID:22302148; http://dx.doi.org/10.1093/nar/gks034.
    • (2012) Nucleic Acids Res , vol.40 , pp. 4422-4431
    • Xie, M.1    Ren, G.2    Costa-Nunes, P.3    Pontes, O.4    Yu, B.5
  • 40
    • 84863692940 scopus 로고    scopus 로고
    • IDN2 and its paralogs form a complex required for RNA-directed DNA methylation
    • PMID:22570638
    • Zhang CJ, Ning YQ, Zhang SW, Chen Q, Shao CR, Guo YW, et al. IDN2 and its paralogs form a complex required for RNA-directed DNA methylation. PLoS Genet 2012; 8:e1002693; PMID:22570638; http://dx.doi.org/10.1371/journal.pgen.1002693.
    • (2012) PLoS Genet , vol.8
    • Zhang, C.J.1    Ning, Y.Q.2    Zhang, S.W.3    Chen, Q.4    Shao, C.R.5    Guo, Y.W.6
  • 41
    • 0036245276 scopus 로고    scopus 로고
    • The art and design of genetic screens: Arabidopsis thaliana
    • PMID:11836506
    • Page DR, Grossniklaus U. The art and design of genetic screens: Arabidopsis thaliana. Nat Rev Genet 2002; 3:124-136; PMID:11836506; http://dx.doi.org/10.1038/nrg730.
    • (2002) Nat Rev Genet , vol.3 , pp. 124-136
    • Page, D.R.1    Grossniklaus, U.2
  • 42
    • 12744280061 scopus 로고    scopus 로고
    • Silencing in Arabidopsis T-DNA transformants: The predominant role of a gene-specific RNA sensing mechanism versus position effects
    • PMID:15367719
    • Schubert D, Lechtenberg B, Forsbach A, Gils M, Bahadur S, Schmidt R. Silencing in Arabidopsis T-DNA transformants: the predominant role of a gene-specific RNA sensing mechanism versus position effects. Plant Cell 2004; 16:2561-2572; PMID:15367719; http://dx.doi.org/10.1105/tpc.104.024547.
    • (2004) Plant Cell , vol.16 , pp. 2561-2572
    • Schubert, D.1    Lechtenberg, B.2    Forsbach, A.3    Gils, M.4    Bahadur, S.5    Schmidt, R.6
  • 43
    • 64349116494 scopus 로고    scopus 로고
    • A novel strategy for obtaining kanamycin resistance in Arabidopsis thaliana by silencing an endogenous gene encoding a putative chloroplast transporter
    • PMID:19226556
    • Aufsatz W, Nehlin L, Voronin V, Schmidt A, Matzke AJ, Matzke M. A novel strategy for obtaining kanamycin resistance in Arabidopsis thaliana by silencing an endogenous gene encoding a putative chloroplast transporter. Biotechnol J 2009; 4:224-229; PMID:19226556; http://dx.doi.org/10.1002/biot.200800156.
    • (2009) Biotechnol J , vol.4 , pp. 224-229
    • Aufsatz, W.1    Nehlin, L.2    Voronin, V.3    Schmidt, A.4    Matzke, A.J.5    Matzke, M.6
  • 44
    • 70349651782 scopus 로고    scopus 로고
    • Multiple antibiotic resistance in Arabidopsis is conferred by mutations in a chloroplast-localized transport protein
    • PMID:19675150
    • Conte S, Stevenson D, Furner I, Lloyd A. Multiple antibiotic resistance in Arabidopsis is conferred by mutations in a chloroplast-localized transport protein. Plant Physiol 2009; 151:559-573; PMID:19675150; http://dx.doi.org/10.1104/pp.109.143487.
    • (2009) Plant Physiol , vol.151 , pp. 559-573
    • Conte, S.1    Stevenson, D.2    Furner, I.3    Lloyd, A.4
  • 45
    • 2342505910 scopus 로고    scopus 로고
    • Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation
    • PMID:15120073
    • Kanno T, Mette MF, Kreil DP, Aufsatz W, Matzke M, Matzke AJ. Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation. Curr Biol 2004; 14:801-805; PMID:15120073; http://dx.doi.org/10.1016/j.cub.2004.04.037.
    • (2004) Curr Biol , vol.14 , pp. 801-805
    • Kanno, T.1    Mette, M.F.2    Kreil, D.P.3    Aufsatz, W.4    Matzke, M.5    Matzke, A.J.6
  • 46
    • 42649089072 scopus 로고    scopus 로고
    • A structural-maintenance- of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation
    • PMID:18425128
    • Kanno T, Bucher E, Daxinger L, Huettel B, Böhmdorfer G, Gregor W, et al. A structural-maintenance- of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation. Nat Genet 2008; 40:670-675; PMID:18425128; http://dx.doi.org/10.1038/ng.119.
    • (2008) Nat Genet , vol.40 , pp. 670-675
    • Kanno, T.1    Bucher, E.2    Daxinger, L.3    Huettel, B.4    Böhmdorfer, G.5    Gregor, W.6
  • 47
    • 84855283460 scopus 로고    scopus 로고
    • The RNA silencing enzyme RNA polymerase v is required for plant immunity
    • PMID:22242006
    • López A, Ramírez V, García-Andrade J, Flors V, Vera P. The RNA silencing enzyme RNA polymerase v is required for plant immunity. PLoS Genet 2011; 7:e1002434; PMID:22242006; http://dx.doi.org/10.1371/journal.pgen.1002434.
    • (2011) PLoS Genet , vol.7
    • López, A.1    Ramírez, V.2    García-Andrade, J.3    Flors, V.4    Vera, P.5
  • 48
    • 0032981130 scopus 로고    scopus 로고
    • Trans-dominant mutations in the 3'-terminal region of the rpoB gene define highly conserved, essential residues in the beta subunit of RNA polymerase: The GEME motif
    • PMID:10320480
    • Cromie KD, Ahmad K, Malik T, Buyukuslu N, Glass RE. Trans-dominant mutations in the 3'-terminal region of the rpoB gene define highly conserved, essential residues in the beta subunit of RNA polymerase: the GEME motif. Genes Cells 1999; 4:145-159; PMID:10320480; http://dx.doi.org/10.1046/j.1365-2443.1999.00248.x.
    • (1999) Genes Cells , vol.4 , pp. 145-159
    • Cromie, K.D.1    Ahmad, K.2    Malik, T.3    Buyukuslu, N.4    Glass, R.E.5
  • 49
    • 0032758967 scopus 로고    scopus 로고
    • Intragenic suppression of trans-dominant lethal substitutions in the conserved GEME motif of the beta subunit of RNA polymerase: Evidence for functional cooperativity within the C-terminus
    • PMID:10526237
    • Malik T, Ahmad K, Buyukuslu N, Cromie K, Glass RE. Intragenic suppression of trans-dominant lethal substitutions in the conserved GEME motif of the beta subunit of RNA polymerase: evidence for functional cooperativity within the C-terminus. Genes Cells 1999; 4:501-515; PMID:10526237; http://dx.doi.org/10.1046/j.1365-2443.1999.00276.x.
    • (1999) Genes Cells , vol.4 , pp. 501-515
    • Malik, T.1    Ahmad, K.2    Buyukuslu, N.3    Cromie, K.4    Glass, R.E.5
  • 50
    • 73649130942 scopus 로고    scopus 로고
    • A dominant mutation in mediator of paramutation2, one of three second-largest subunits of a plant-specific RNA polymerase, disrupts multiple siRNA silencing processes
    • PMID:19936058
    • Sidorenko L, Dorweiler JE, Cigan AM, Arteaga-Vazquez M, Vyas M, Kermicle J, et al. A dominant mutation in mediator of paramutation2, one of three second-largest subunits of a plant-specific RNA polymerase, disrupts multiple siRNA silencing processes. PLoS Genet 2009; 5:e1000725; PMID:19936058; http://dx.doi.org/10.1371/journal.pgen.1000725.
    • (2009) PLoS Genet , vol.5
    • Sidorenko, L.1    Dorweiler, J.E.2    Cigan, A.M.3    Arteaga-Vazquez, M.4    Vyas, M.5    Kermicle, J.6
  • 51
    • 35148870536 scopus 로고    scopus 로고
    • Widespread role for the flowering-time regulators FCA and FPA in RNA-mediated chromatin silencing
    • PMID:17916737
    • Bäurle I, Smith L, Baulcombe DC, Dean C. Widespread role for the flowering-time regulators FCA and FPA in RNA-mediated chromatin silencing. Science 2007; 318:109-112; PMID:17916737; http://dx.doi.org/10.1126/science.1146565.
    • (2007) Science , vol.318 , pp. 109-112
    • Bäurle, I.1    Smith, L.2    Baulcombe, D.C.3    Dean, C.4
  • 52
    • 33846931283 scopus 로고    scopus 로고
    • The SRA methyl-cytosine-binding domain links DNA and histone methylation
    • PMID:17239600
    • Johnson LM, Bostick M, Zhang X, Kraft E, Henderson I, Callis J, et al. The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr Biol 2007; 17:379-384; PMID:17239600; http://dx.doi.org/10.1016/j.cub.2007.01.009.
    • (2007) Curr Biol , vol.17 , pp. 379-384
    • Johnson, L.M.1    Bostick, M.2    Zhang, X.3    Kraft, E.4    Henderson, I.5    Callis, J.6
  • 53
    • 84861911293 scopus 로고    scopus 로고
    • INVOLVED IN DE NOVO 2-containing complex involved in RNAdirected DNA methylation in Arabidopsis
    • PMID:22592791
    • Ausin I, Greenberg MV, Simanshu DK, Hale CJ, Vashisht AA, Simon SA, et al. INVOLVED IN DE NOVO 2-containing complex involved in RNAdirected DNA methylation in Arabidopsis. Proc Natl Acad Sci U S A 2012; 109:8374-8381; http://dx.doi.org/10.1073/pnas.1206638109; PMID:22592791.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 8374-8381
    • Ausin, I.1    Greenberg, M.V.2    Simanshu, D.K.3    Hale, C.J.4    Vashisht, A.A.5    Simon, S.A.6
  • 54
    • 24344433177 scopus 로고    scopus 로고
    • Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis
    • PMID:16140984
    • Pontier D, Yahubyan G, Vega D, Bulski A, Saez-Vasquez J, Hakimi MA, et al. Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis. Genes Dev 2005; 19:2030-2040; PMID:16140984; http://dx.doi.org/10.1101/gad.348405.
    • (2005) Genes Dev , vol.19 , pp. 2030-2040
    • Pontier, D.1    Yahubyan, G.2    Vega, D.3    Bulski, A.4    Saez-Vasquez, J.5    Hakimi, M.A.6
  • 55
    • 62049085784 scopus 로고    scopus 로고
    • DsRNA with 5' overhangs contributes to endogenous and antiviral RNA silencing pathways in plants
    • PMID:19165150
    • Fukunaga R, Doudna JA. dsRNA with 5' overhangs contributes to endogenous and antiviral RNA silencing pathways in plants. EMBO J 2009; 28:545-555; PMID:19165150; http://dx.doi.org/10.1038/emboj.2009.2.
    • (2009) EMBO J , vol.28 , pp. 545-555
    • Fukunaga, R.1    Doudna, J.A.2
  • 56
    • 34547093155 scopus 로고    scopus 로고
    • CyMATE: A new tool for methylation analysis of plant genomic DNA after bisulphite sequencing
    • PMID:17559516
    • Hetzl J, Foerster AM, Raidl G, Mittelsten Scheid O. CyMATE: a new tool for methylation analysis of plant genomic DNA after bisulphite sequencing. Plant J 2007; 51:526-536; PMID:17559516; http://dx.doi.org/10.1111/j.1365-313X.2007.03152.x.
    • (2007) Plant J , vol.51 , pp. 526-536
    • Hetzl, J.1    Foerster, A.M.2    Raidl, G.3    Mittelsten, S.O.4
  • 57
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • PMID:11328886
    • Pfaffl MW. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 2001; 29:e45; PMID:11328886; http://dx.doi.org/10.1093/nar/29.9.e45.
    • (2001) Nucleic Acids Res , vol.29
    • Pfaffl, M.W.1
  • 58
    • 0034596989 scopus 로고    scopus 로고
    • Transcriptional silencing and promoter methylation triggered by double-stranded RNA
    • PMID:11013221
    • Mette MF, Aufsatz W, van der Winden J, Matzke MA, Matzke AJ. Transcriptional silencing and promoter methylation triggered by double-stranded RNA. EMBO J 2000; 19:5194-5201; PMID:11013221; http://dx.doi.org/10.1093/emboj/19.19.5194.
    • (2000) EMBO J , vol.19 , pp. 5194-5201
    • Mette, M.F.1    Aufsatz, W.2    van der Winden, J.3    Matzke, M.A.4    Matzke, A.J.5
  • 59
    • 25144439545 scopus 로고    scopus 로고
    • Analysis of double-stranded RNA and small RNAs involved in RNA-mediated transcriptional gene silencing
    • PMID:15990398
    • Mette MF, Aufsatz W, Kanno T, Daxinger L, Rovina P, Matzke M, et al. Analysis of double-stranded RNA and small RNAs involved in RNA-mediated transcriptional gene silencing. Methods Mol Biol 2005; 309:61-82; PMID:15990398.
    • (2005) Methods Mol Biol , vol.309 , pp. 61-82
    • Mette, M.F.1    Aufsatz, W.2    Kanno, T.3    Daxinger, L.4    Rovina, P.5    Matzke, M.6
  • 60
    • 0040241402 scopus 로고
    • Genomic sequencing
    • PMID:6326095
    • Church GM, Gilbert W. Genomic sequencing. Proc Natl Acad Sci U S A 1984; 81:1991-1995; PMID:6326095; http://dx.doi.org/10.1073/pnas.81.7.1991.
    • (1984) Proc Natl Acad Sci U S A , vol.81 , pp. 1991-1995
    • Church, G.M.1    Gilbert, W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.