-
1
-
-
20444426255
-
Paramutation: An encounter leaving a lasting impression
-
PMID:15949762
-
Stam M, Mittelsten Scheid O. Paramutation: an encounter leaving a lasting impression. Trends Plant Sci 2005; 10:283-290; PMID:15949762; http://dx.doi.org/10.1016/j.tplants.2005.04.009.
-
(2005)
Trends Plant Sci
, vol.10
, pp. 283-290
-
-
Stam, M.1
Mittelsten, S.O.2
-
2
-
-
33947303168
-
Transposable elements and the epigenetic regulation of the genome
-
PMID:17363976
-
Slotkin RK, Martienssen R. Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 2007; 8:272-285; PMID:17363976; http://dx.doi.org/10.1038/nrg2072.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 272-285
-
-
Slotkin, R.K.1
Martienssen, R.2
-
3
-
-
40649084031
-
Rapid quantification of global DNA methylation by isocratic cation exchange high-performance liquid chromatography
-
PMID:18249178
-
Rozhon W, Baubec T, Mayerhofer J, Mittelsten Scheid O, Jonak C. Rapid quantification of global DNA methylation by isocratic cation exchange high-performance liquid chromatography. Anal Biochem 2008; 375:354-360; PMID:18249178; http://dx.doi.org/10.1016/j.ab.2008.01.001.
-
(2008)
Anal Biochem
, vol.375
, pp. 354-360
-
-
Rozhon, W.1
Baubec, T.2
Mayerhofer, J.3
Mittelsten, S.O.4
Jonak, C.5
-
4
-
-
40749109894
-
Shotgun bisulphate sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
PMID:18278030
-
Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, et al. Shotgun bisulphate sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 2008; 452:215-219; PMID:18278030; http://dx.doi.org/10.1038/nature06745.
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.3
Chen, Z.4
Merriman, B.5
Haudenschild, C.D.6
-
5
-
-
0034950442
-
Site specificity of the Arabidopsis METI DNA methyltransferase demonstrated through hypermethylation of the superman locus
-
PMID:11442057
-
Kishimoto N, Sakai H, Jackson J, Jacobsen SE, Meyerowitz EM, Dennis ES, et al. Site specificity of the Arabidopsis METI DNA methyltransferase demonstrated through hypermethylation of the superman locus. Plant Mol Biol 2001; 46:171-13; PMID:11442057; http://dx.doi.org/10.1023/A:1010636222327.
-
(2001)
Plant Mol Biol
, vol.46
, pp. 171-173
-
-
Kishimoto, N.1
Sakai, H.2
Jackson, J.3
Jacobsen, S.E.4
Meyerowitz, E.M.5
Dennis, E.S.6
-
6
-
-
0031832432
-
A DNA methyltransferase homolog with a chromodomain exists in multiple polymorphic forms in Arabidopsis
-
PMID:9584105
-
Henikoff S, Comai L. A DNA methyltransferase homolog with a chromodomain exists in multiple polymorphic forms in Arabidopsis. Genetics 1998; 149:307-318; PMID:9584105.
-
(1998)
Genetics
, vol.149
, pp. 307-318
-
-
Henikoff, S.1
Comai, L.2
-
7
-
-
0035874929
-
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
-
PMID:11349138
-
Lindroth AM, Cao X, Jackson JP, Zilberman D, McCallum CM, Henikoff S, et al. Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation. Science 2001; 292:2077-2080; PMID:11349138; http://dx.doi.org/10.1126/science.1059745.
-
(2001)
Science
, vol.292
, pp. 2077-2080
-
-
Lindroth, A.M.1
Cao, X.2
Jackson, J.P.3
Zilberman, D.4
McCallum, C.M.5
Henikoff, S.6
-
8
-
-
0037058968
-
Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes
-
PMID:12151602
-
Cao X, Jacobsen SE. Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proc Natl Acad Sci U S A 2002; 99(Suppl 4):16491-16498; PMID:12151602; http://dx.doi.org/10.1073/pnas.162371599.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, Issue.SUPPL. 4
, pp. 16491-16498
-
-
Cao, X.1
Jacobsen, S.E.2
-
9
-
-
0037046810
-
Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing
-
PMID:12121623
-
Cao X, Jacobsen SE. Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr Biol 2002; 12:1138-1144; PMID:12121623; http://dx.doi.org/10.1016/S0960-9822(02)00925-9.
-
(2002)
Curr Biol
, vol.12
, pp. 1138-1144
-
-
Cao, X.1
Jacobsen, S.E.2
-
10
-
-
0347033302
-
Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation
-
PMID:14680640
-
Cao X, Aufsatz W, Zilberman D, Mette MF, Huang MS, Matzke M, et al. Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation. Curr Biol 2003; 13:2212-2217; PMID:14680640; http://dx.doi.org/10.1016/j.cub.2003.11.052.
-
(2003)
Curr Biol
, vol.13
, pp. 2212-2217
-
-
Cao, X.1
Aufsatz, W.2
Zilberman, D.3
Mette, M.F.4
Huang, M.S.5
Matzke, M.6
-
11
-
-
84862777814
-
A role for small RNAs in DNA double-strand break repair
-
PMID:22445173
-
Wei W, Ba Z, Gao M, Wu Y, Ma Y, Amiard S, et al. A role for small RNAs in DNA double-strand break repair. Cell 2012; 149:101-112; PMID:22445173; http://dx.doi.org/10.1016/j.cell.2012.03.002.
-
(2012)
Cell
, vol.149
, pp. 101-112
-
-
Wei, W.1
Ba, Z.2
Gao, M.3
Wu, Y.4
Ma, Y.5
Amiard, S.6
-
12
-
-
80655149111
-
RNA silencing pathways of plants: Silencing and its suppression by plant DNA viruses
-
PMID:21683815
-
Hohn T, Vazquez F. RNA silencing pathways of plants: silencing and its suppression by plant DNA viruses. Biochim Biophys Acta 2011; 1809:588-600; PMID:21683815.
-
(2011)
Biochim Biophys Acta
, vol.1809
, pp. 588-600
-
-
Hohn, T.1
Vazquez, F.2
-
13
-
-
67650252226
-
RNA-directed DNA methylation and demethylation in plants
-
PMID:19381459
-
Chinnusamy V, Zhu JK. RNA-directed DNA methylation and demethylation in plants. Sci China C Life Sci 2009; 52:331-343; PMID:19381459; http://dx.doi.org/10.1007/s11427-009-0052-1.
-
(2009)
Sci China C Life Sci
, vol.52
, pp. 331-343
-
-
Chinnusamy, V.1
Zhu, J.K.2
-
14
-
-
65249148019
-
RNA-mediated chromatin-based silencing in plants
-
PMID:19243928
-
Matzke M, Kanno T, Daxinger L, Huettel B, Matzke AJ. RNA-mediated chromatin-based silencing in plants. Curr Opin Cell Biol 2009; 21:367-376; PMID:19243928; http://dx.doi.org/10.1016/j.ceb.2009.01.025.
-
(2009)
Curr Opin Cell Biol
, vol.21
, pp. 367-376
-
-
Matzke, M.1
Kanno, T.2
Daxinger, L.3
Huettel, B.4
Matzke, A.J.5
-
15
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
PMID:20142834
-
Law JA, Jacobsen SE. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet 2010; 11:204-220; PMID:20142834; http://dx.doi.org/10.1038/nrg2719.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
16
-
-
79960716754
-
Multisubunit RNA polymerases IV and V: Purveyors of non-coding RNA for plant gene silencing
-
PMID:21779025
-
Haag JR, Pikaard CS. Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing. Nat Rev Mol Cell Biol 2011; 12:483-492; PMID:21779025; http://dx.doi.org/10.1038/nrm3152.
-
(2011)
Nat Rev Mol Cell Biol
, vol.12
, pp. 483-492
-
-
Haag, J.R.1
Pikaard, C.S.2
-
17
-
-
14844295120
-
RNA polymerase IV directs silencing of endogenous DNA
-
PMID:15692015
-
Herr AJ, Jensen MB, Dalmay T, Baulcombe DC. RNA polymerase IV directs silencing of endogenous DNA. Science 2005; 308:118-120; PMID:15692015; http://dx.doi.org/10.1126/science.1106910.
-
(2005)
Science
, vol.308
, pp. 118-120
-
-
Herr, A.J.1
Jensen, M.B.2
Dalmay, T.3
Baulcombe, D.C.4
-
18
-
-
14844302397
-
Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
-
PMID:15766525
-
Onodera Y, Haag JR, Ream T, Costa Nunes P, Pontes O, Pikaard CS. Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell 2005; 120:613-622; PMID:15766525; http://dx.doi.org/10.1016/j.cell.2005.02.007.
-
(2005)
Cell
, vol.120
, pp. 613-622
-
-
Onodera, Y.1
Haag, J.R.2
Ream, T.3
Costa, N.P.4
Pontes, O.5
Pikaard, C.S.6
-
19
-
-
80053915058
-
An atypical epigenetic mechanism affects uniparental expression of Pol IV-dependent siRNAs
-
PMID:22003406
-
Mosher RA, Tan EH, Shin J, Fischer RL, Pikaard CS, Baulcombe DC. An atypical epigenetic mechanism affects uniparental expression of Pol IV-dependent siRNAs. PLoS One 2011; 6:e25756; PMID:22003406; http://dx.doi.org/10.1371/journal.pone.0025756.
-
(2011)
PLoS One
, vol.6
-
-
Mosher, R.A.1
Tan, E.H.2
Shin, J.3
Fischer, R.L.4
Pikaard, C.S.5
Baulcombe, D.C.6
-
20
-
-
19344374219
-
Genetic and functional diversification of small RNA pathways in plants
-
PMID:15024409
-
Xie Z, Johansen LK, Gustafson AM, Kasschau KD, Lellis AD, Zilberman D, et al. Genetic and functional diversification of small RNA pathways in plants. PLoS Biol 2004; 2:E104; PMID:15024409; http://dx.doi.org/10.1371/journal.pbio.0020104.
-
(2004)
PLoS Biol
, vol.2
-
-
Xie, Z.1
Johansen, L.K.2
Gustafson, A.M.3
Kasschau, K.D.4
Lellis, A.D.5
Zilberman, D.6
-
21
-
-
58149347080
-
A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation
-
PMID:19078964
-
Daxinger L, Kanno T, Bucher E, van der Winden J, Naumann U, Matzke AJ, et al. A stepwise pathway for biogenesis of 24-nt secondary siRNAs and spreading of DNA methylation. EMBO J 2009; 28:48-57; PMID:19078964; http://dx.doi.org/10.1038/emboj.2008.260.
-
(2009)
EMBO J
, vol.28
, pp. 48-57
-
-
Daxinger, L.1
Kanno, T.2
Bucher, E.3
van der Winden, J.4
Naumann, U.5
Matzke, A.J.6
-
22
-
-
32644454064
-
HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2' OH of the 3' terminal nucleotide
-
PMID:16449203
-
Yang Z, Ebright YW, Yu B, Chen X. HEN1 recognizes 21-24 nt small RNA duplexes and deposits a methyl group onto the 2' OH of the 3' terminal nucleotide. Nucleic Acids Res 2006; 34:667-675; PMID:16449203; http://dx.doi.org/10.1093/nar/gkj474.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 667-675
-
-
Yang, Z.1
Ebright, Y.W.2
Yu, B.3
Chen, X.4
-
23
-
-
77957232609
-
SiRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis
-
PMID:20448024
-
Yu B, Bi L, Zhai J, Agarwal M, Li S, Wu Q, et al. siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis. Nucleic Acids Res 2010; 38:5844-5850; PMID:20448024; http://dx.doi.org/10.1093/nar/gkq348.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 5844-5850
-
-
Yu, B.1
Bi, L.2
Zhai, J.3
Agarwal, M.4
Li, S.5
Wu, Q.6
-
24
-
-
0037474126
-
ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
-
PMID:12522258
-
Zilberman D, Cao X, Jacobsen SE. ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science 2003; 299:716-719; PMID:12522258; http://dx.doi.org/10.1126/science.1079695.
-
(2003)
Science
, vol.299
, pp. 716-719
-
-
Zilberman, D.1
Cao, X.2
Jacobsen, S.E.3
-
25
-
-
33745699398
-
An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana
-
PMID:16839879
-
Li CF, Pontes O, El-Shami M, Henderson IR, Bernatavichute YV, Chan SW, et al. An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell 2006; 126:93-106; PMID:16839879; http://dx.doi.org/10.1016/j.cell.2006.05.032.
-
(2006)
Cell
, vol.126
, pp. 93-106
-
-
Li, C.F.1
Pontes, O.2
El-Shami, M.3
Henderson, I.R.4
Bernatavichute, Y.V.5
Chan, S.W.6
-
26
-
-
33947586544
-
Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing
-
PMID:17332757
-
Zheng X, Zhu J, Kapoor A, Zhu JK. Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing. EMBO J 2007; 26:1691-1701; PMID:17332757; http://dx.doi.org/10.1038/sj.emboj.7601603.
-
(2007)
EMBO J
, vol.26
, pp. 1691-1701
-
-
Zheng, X.1
Zhu, J.2
Kapoor, A.3
Zhu, J.K.4
-
27
-
-
77950342461
-
The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci
-
PMID:20173091
-
Havecker ER, Wallbridge LM, Hardcastle TJ, Bush MS, Kelly KA, Dunn RM, et al. The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci. Plant Cell 2010; 22:321-334; PMID:20173091; http://dx.doi.org/10.1105/tpc.109.072199.
-
(2010)
Plant Cell
, vol.22
, pp. 321-334
-
-
Havecker, E.R.1
Wallbridge, L.M.2
Hardcastle, T.J.3
Bush, M.S.4
Kelly, K.A.5
Dunn, R.M.6
-
28
-
-
80053587336
-
AGO6 functions in RNAmediated transcriptional gene silencing in shoot and root meristems in Arabidopsis thaliana
-
PMID:21998686
-
Eun C, Lorkovic ZJ, Naumann U, Long Q, Havecker ER, Simon SA, et al. AGO6 functions in RNAmediated transcriptional gene silencing in shoot and root meristems in Arabidopsis thaliana. PLoS One 2011; 6:e25730; PMID:21998686; http://dx.doi.org/10.1371/journal.pone.0025730.
-
(2011)
PLoS One
, vol.6
-
-
Eun, C.1
Lorkovic, Z.J.2
Naumann, U.3
Long, Q.4
Havecker, E.R.5
Simon, S.A.6
-
29
-
-
22844447304
-
Atypical RNA polymerase subunits required for RNA-directed DNA methylation
-
PMID:15924141
-
Kanno T, Huettel B, Mette MF, Aufsatz W, Jaligot E, Daxinger L, et al. Atypical RNA polymerase subunits required for RNA-directed DNA methylation. Nat Genet 2005; 37:761-765; PMID:15924141; http://dx.doi.org/10.1038/ng1580.
-
(2005)
Nat Genet
, vol.37
, pp. 761-765
-
-
Kanno, T.1
Huettel, B.2
Mette, M.F.3
Aufsatz, W.4
Jaligot, E.5
Daxinger, L.6
-
30
-
-
58649104893
-
Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II
-
PMID:19110459
-
Ream TS, Haag JR, Wierzbicki AT, Nicora CD, Norbeck AD, Zhu JK, et al. Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II. Mol Cell 2009; 33:192-203; PMID:19110459; http://dx.doi.org/10.1016/j.molcel.2008.12.015.
-
(2009)
Mol Cell
, vol.33
, pp. 192-203
-
-
Ream, T.S.1
Haag, J.R.2
Wierzbicki, A.T.3
Nicora, C.D.4
Norbeck, A.D.5
Zhu, J.K.6
-
31
-
-
55449131096
-
Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes
-
PMID:19013275
-
Wierzbicki AT, Haag JR, Pikaard CS. Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell 2008; 135:635-648; PMID:19013275; http://dx.doi.org/10.1016/j.cell.2008.09.035.
-
(2008)
Cell
, vol.135
, pp. 635-648
-
-
Wierzbicki, A.T.1
Haag, J.R.2
Pikaard, C.S.3
-
32
-
-
58849120615
-
PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit
-
PMID:19141635
-
Lahmy S, Pontier D, Cavel E, Vega D, El-Shami M, Kanno T, et al. PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit. Proc Natl Acad Sci U S A 2009; 106:941-946; PMID:19141635; http://dx.doi.org/10.1073/pnas.0810310106.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 941-946
-
-
Lahmy, S.1
Pontier, D.2
Cavel, E.3
Vega, D.4
El-Shami, M.5
Kanno, T.6
-
33
-
-
79953189712
-
Genetic evidence that DNA methyltransferase DRM2 has a direct catalytic role in RNAdirected DNA methylation in Arabidopsis thaliana
-
PMID:21212233
-
Naumann U, Daxinger L, Kanno T, Eun C, Long Q, Lorkovic ZJ, et al. Genetic evidence that DNA methyltransferase DRM2 has a direct catalytic role in RNAdirected DNA methylation in Arabidopsis thaliana. Genetics 2011; 187:977-979; PMID:21212233; http://dx.doi.org/10.1534/genetics.110.125401.
-
(2011)
Genetics
, vol.187
, pp. 977-979
-
-
Naumann, U.1
Daxinger, L.2
Kanno, T.3
Eun, C.4
Long, Q.5
Lorkovic, Z.J.6
-
34
-
-
0037059080
-
RNA-directed DNA methylation in Arabidopsis
-
PMID:12169664
-
Aufsatz W, Mette MF, van der Winden J, Matzke AJ, Matzke M. RNA-directed DNA methylation in Arabidopsis. Proc Natl Acad Sci U S A 2002; 99(Suppl 4):16499-16506; PMID:12169664; http://dx.doi.org/10.1073/pnas.162371499.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, Issue.SUPPL. 4
, pp. 16499-16506
-
-
Aufsatz, W.1
Mette, M.F.2
van der Winden, J.3
Matzke, A.J.4
Matzke, M.5
-
35
-
-
37249083971
-
Local DNA features affect RNA-directed transcriptional gene silencing and DNA methylation
-
PMID:17971044
-
Fischer U, Kuhlmann M, Pecinka A, Schmidt R, Mette MF. Local DNA features affect RNA-directed transcriptional gene silencing and DNA methylation. Plant J 2008; 53:1-10; PMID:17971044; http://dx.doi.org/10.1111/j.1365-313X.2007.03311.x.
-
(2008)
Plant J
, vol.53
, pp. 1-10
-
-
Fischer, U.1
Kuhlmann, M.2
Pecinka, A.3
Schmidt, R.4
Mette, M.F.5
-
36
-
-
77951824122
-
An SGS3-like protein functions in RNA-directed DNA methylation and transcriptional gene silencing in Arabidopsis
-
PMID:20059743
-
Zheng Z, Xing Y, He XJ, Li W, Hu Y, Yadav SK, et al. An SGS3-like protein functions in RNA-directed DNA methylation and transcriptional gene silencing in Arabidopsis. Plant J 2010; 62:92-99; PMID:20059743; http://dx.doi.org/10.1111/j.1365-313X.2010.04130.x.
-
(2010)
Plant J
, vol.62
, pp. 92-99
-
-
Zheng, Z.1
Xing, Y.2
He, X.J.3
Li, W.4
Hu, Y.5
Yadav, S.K.6
-
37
-
-
84861527038
-
Involvement of a GHKL ATPase in RNA-Directed DNA Methylation in Arabidopsis thaliana
-
PMID:22560611
-
Lorković ZJ, Naumann U, Matzke AJ, Matzke M. Involvement of a GHKL ATPase in RNA-Directed DNA Methylation in Arabidopsis thaliana. Curr Biol 2012; 22:933-938; PMID:22560611; http://dx.doi.org/10.1016/j.cub.2012.03.061.
-
(2012)
Curr Biol
, vol.22
, pp. 933-938
-
-
Lorković, Z.J.1
Naumann, U.2
Matzke, A.J.3
Matzke, M.4
-
38
-
-
71449098588
-
IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana
-
PMID:19935683
-
Ausin I, Mockler TC, Chory J, Jacobsen SE. IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana. Nat Struct Mol Biol 2009; 16:1328-1330; PMID:19935683; http://dx.doi.org/10.1038/nsmb.1690.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 1328-1330
-
-
Ausin, I.1
Mockler, T.C.2
Chory, J.3
Jacobsen, S.E.4
-
39
-
-
84861564518
-
A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation
-
PMID:22302148
-
Xie M, Ren G, Costa-Nunes P, Pontes O, Yu B. A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation. Nucleic Acids Res 2012; 40:4422-4431; PMID:22302148; http://dx.doi.org/10.1093/nar/gks034.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 4422-4431
-
-
Xie, M.1
Ren, G.2
Costa-Nunes, P.3
Pontes, O.4
Yu, B.5
-
40
-
-
84863692940
-
IDN2 and its paralogs form a complex required for RNA-directed DNA methylation
-
PMID:22570638
-
Zhang CJ, Ning YQ, Zhang SW, Chen Q, Shao CR, Guo YW, et al. IDN2 and its paralogs form a complex required for RNA-directed DNA methylation. PLoS Genet 2012; 8:e1002693; PMID:22570638; http://dx.doi.org/10.1371/journal.pgen.1002693.
-
(2012)
PLoS Genet
, vol.8
-
-
Zhang, C.J.1
Ning, Y.Q.2
Zhang, S.W.3
Chen, Q.4
Shao, C.R.5
Guo, Y.W.6
-
41
-
-
0036245276
-
The art and design of genetic screens: Arabidopsis thaliana
-
PMID:11836506
-
Page DR, Grossniklaus U. The art and design of genetic screens: Arabidopsis thaliana. Nat Rev Genet 2002; 3:124-136; PMID:11836506; http://dx.doi.org/10.1038/nrg730.
-
(2002)
Nat Rev Genet
, vol.3
, pp. 124-136
-
-
Page, D.R.1
Grossniklaus, U.2
-
42
-
-
12744280061
-
Silencing in Arabidopsis T-DNA transformants: The predominant role of a gene-specific RNA sensing mechanism versus position effects
-
PMID:15367719
-
Schubert D, Lechtenberg B, Forsbach A, Gils M, Bahadur S, Schmidt R. Silencing in Arabidopsis T-DNA transformants: the predominant role of a gene-specific RNA sensing mechanism versus position effects. Plant Cell 2004; 16:2561-2572; PMID:15367719; http://dx.doi.org/10.1105/tpc.104.024547.
-
(2004)
Plant Cell
, vol.16
, pp. 2561-2572
-
-
Schubert, D.1
Lechtenberg, B.2
Forsbach, A.3
Gils, M.4
Bahadur, S.5
Schmidt, R.6
-
43
-
-
64349116494
-
A novel strategy for obtaining kanamycin resistance in Arabidopsis thaliana by silencing an endogenous gene encoding a putative chloroplast transporter
-
PMID:19226556
-
Aufsatz W, Nehlin L, Voronin V, Schmidt A, Matzke AJ, Matzke M. A novel strategy for obtaining kanamycin resistance in Arabidopsis thaliana by silencing an endogenous gene encoding a putative chloroplast transporter. Biotechnol J 2009; 4:224-229; PMID:19226556; http://dx.doi.org/10.1002/biot.200800156.
-
(2009)
Biotechnol J
, vol.4
, pp. 224-229
-
-
Aufsatz, W.1
Nehlin, L.2
Voronin, V.3
Schmidt, A.4
Matzke, A.J.5
Matzke, M.6
-
44
-
-
70349651782
-
Multiple antibiotic resistance in Arabidopsis is conferred by mutations in a chloroplast-localized transport protein
-
PMID:19675150
-
Conte S, Stevenson D, Furner I, Lloyd A. Multiple antibiotic resistance in Arabidopsis is conferred by mutations in a chloroplast-localized transport protein. Plant Physiol 2009; 151:559-573; PMID:19675150; http://dx.doi.org/10.1104/pp.109.143487.
-
(2009)
Plant Physiol
, vol.151
, pp. 559-573
-
-
Conte, S.1
Stevenson, D.2
Furner, I.3
Lloyd, A.4
-
45
-
-
2342505910
-
Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation
-
PMID:15120073
-
Kanno T, Mette MF, Kreil DP, Aufsatz W, Matzke M, Matzke AJ. Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation. Curr Biol 2004; 14:801-805; PMID:15120073; http://dx.doi.org/10.1016/j.cub.2004.04.037.
-
(2004)
Curr Biol
, vol.14
, pp. 801-805
-
-
Kanno, T.1
Mette, M.F.2
Kreil, D.P.3
Aufsatz, W.4
Matzke, M.5
Matzke, A.J.6
-
46
-
-
42649089072
-
A structural-maintenance- of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation
-
PMID:18425128
-
Kanno T, Bucher E, Daxinger L, Huettel B, Böhmdorfer G, Gregor W, et al. A structural-maintenance- of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation. Nat Genet 2008; 40:670-675; PMID:18425128; http://dx.doi.org/10.1038/ng.119.
-
(2008)
Nat Genet
, vol.40
, pp. 670-675
-
-
Kanno, T.1
Bucher, E.2
Daxinger, L.3
Huettel, B.4
Böhmdorfer, G.5
Gregor, W.6
-
47
-
-
84855283460
-
The RNA silencing enzyme RNA polymerase v is required for plant immunity
-
PMID:22242006
-
López A, Ramírez V, García-Andrade J, Flors V, Vera P. The RNA silencing enzyme RNA polymerase v is required for plant immunity. PLoS Genet 2011; 7:e1002434; PMID:22242006; http://dx.doi.org/10.1371/journal.pgen.1002434.
-
(2011)
PLoS Genet
, vol.7
-
-
López, A.1
Ramírez, V.2
García-Andrade, J.3
Flors, V.4
Vera, P.5
-
48
-
-
0032981130
-
Trans-dominant mutations in the 3'-terminal region of the rpoB gene define highly conserved, essential residues in the beta subunit of RNA polymerase: The GEME motif
-
PMID:10320480
-
Cromie KD, Ahmad K, Malik T, Buyukuslu N, Glass RE. Trans-dominant mutations in the 3'-terminal region of the rpoB gene define highly conserved, essential residues in the beta subunit of RNA polymerase: the GEME motif. Genes Cells 1999; 4:145-159; PMID:10320480; http://dx.doi.org/10.1046/j.1365-2443.1999.00248.x.
-
(1999)
Genes Cells
, vol.4
, pp. 145-159
-
-
Cromie, K.D.1
Ahmad, K.2
Malik, T.3
Buyukuslu, N.4
Glass, R.E.5
-
49
-
-
0032758967
-
Intragenic suppression of trans-dominant lethal substitutions in the conserved GEME motif of the beta subunit of RNA polymerase: Evidence for functional cooperativity within the C-terminus
-
PMID:10526237
-
Malik T, Ahmad K, Buyukuslu N, Cromie K, Glass RE. Intragenic suppression of trans-dominant lethal substitutions in the conserved GEME motif of the beta subunit of RNA polymerase: evidence for functional cooperativity within the C-terminus. Genes Cells 1999; 4:501-515; PMID:10526237; http://dx.doi.org/10.1046/j.1365-2443.1999.00276.x.
-
(1999)
Genes Cells
, vol.4
, pp. 501-515
-
-
Malik, T.1
Ahmad, K.2
Buyukuslu, N.3
Cromie, K.4
Glass, R.E.5
-
50
-
-
73649130942
-
A dominant mutation in mediator of paramutation2, one of three second-largest subunits of a plant-specific RNA polymerase, disrupts multiple siRNA silencing processes
-
PMID:19936058
-
Sidorenko L, Dorweiler JE, Cigan AM, Arteaga-Vazquez M, Vyas M, Kermicle J, et al. A dominant mutation in mediator of paramutation2, one of three second-largest subunits of a plant-specific RNA polymerase, disrupts multiple siRNA silencing processes. PLoS Genet 2009; 5:e1000725; PMID:19936058; http://dx.doi.org/10.1371/journal.pgen.1000725.
-
(2009)
PLoS Genet
, vol.5
-
-
Sidorenko, L.1
Dorweiler, J.E.2
Cigan, A.M.3
Arteaga-Vazquez, M.4
Vyas, M.5
Kermicle, J.6
-
51
-
-
35148870536
-
Widespread role for the flowering-time regulators FCA and FPA in RNA-mediated chromatin silencing
-
PMID:17916737
-
Bäurle I, Smith L, Baulcombe DC, Dean C. Widespread role for the flowering-time regulators FCA and FPA in RNA-mediated chromatin silencing. Science 2007; 318:109-112; PMID:17916737; http://dx.doi.org/10.1126/science.1146565.
-
(2007)
Science
, vol.318
, pp. 109-112
-
-
Bäurle, I.1
Smith, L.2
Baulcombe, D.C.3
Dean, C.4
-
52
-
-
33846931283
-
The SRA methyl-cytosine-binding domain links DNA and histone methylation
-
PMID:17239600
-
Johnson LM, Bostick M, Zhang X, Kraft E, Henderson I, Callis J, et al. The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr Biol 2007; 17:379-384; PMID:17239600; http://dx.doi.org/10.1016/j.cub.2007.01.009.
-
(2007)
Curr Biol
, vol.17
, pp. 379-384
-
-
Johnson, L.M.1
Bostick, M.2
Zhang, X.3
Kraft, E.4
Henderson, I.5
Callis, J.6
-
53
-
-
84861911293
-
INVOLVED IN DE NOVO 2-containing complex involved in RNAdirected DNA methylation in Arabidopsis
-
PMID:22592791
-
Ausin I, Greenberg MV, Simanshu DK, Hale CJ, Vashisht AA, Simon SA, et al. INVOLVED IN DE NOVO 2-containing complex involved in RNAdirected DNA methylation in Arabidopsis. Proc Natl Acad Sci U S A 2012; 109:8374-8381; http://dx.doi.org/10.1073/pnas.1206638109; PMID:22592791.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 8374-8381
-
-
Ausin, I.1
Greenberg, M.V.2
Simanshu, D.K.3
Hale, C.J.4
Vashisht, A.A.5
Simon, S.A.6
-
54
-
-
24344433177
-
Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis
-
PMID:16140984
-
Pontier D, Yahubyan G, Vega D, Bulski A, Saez-Vasquez J, Hakimi MA, et al. Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis. Genes Dev 2005; 19:2030-2040; PMID:16140984; http://dx.doi.org/10.1101/gad.348405.
-
(2005)
Genes Dev
, vol.19
, pp. 2030-2040
-
-
Pontier, D.1
Yahubyan, G.2
Vega, D.3
Bulski, A.4
Saez-Vasquez, J.5
Hakimi, M.A.6
-
55
-
-
62049085784
-
DsRNA with 5' overhangs contributes to endogenous and antiviral RNA silencing pathways in plants
-
PMID:19165150
-
Fukunaga R, Doudna JA. dsRNA with 5' overhangs contributes to endogenous and antiviral RNA silencing pathways in plants. EMBO J 2009; 28:545-555; PMID:19165150; http://dx.doi.org/10.1038/emboj.2009.2.
-
(2009)
EMBO J
, vol.28
, pp. 545-555
-
-
Fukunaga, R.1
Doudna, J.A.2
-
56
-
-
34547093155
-
CyMATE: A new tool for methylation analysis of plant genomic DNA after bisulphite sequencing
-
PMID:17559516
-
Hetzl J, Foerster AM, Raidl G, Mittelsten Scheid O. CyMATE: a new tool for methylation analysis of plant genomic DNA after bisulphite sequencing. Plant J 2007; 51:526-536; PMID:17559516; http://dx.doi.org/10.1111/j.1365-313X.2007.03152.x.
-
(2007)
Plant J
, vol.51
, pp. 526-536
-
-
Hetzl, J.1
Foerster, A.M.2
Raidl, G.3
Mittelsten, S.O.4
-
57
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
PMID:11328886
-
Pfaffl MW. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 2001; 29:e45; PMID:11328886; http://dx.doi.org/10.1093/nar/29.9.e45.
-
(2001)
Nucleic Acids Res
, vol.29
-
-
Pfaffl, M.W.1
-
58
-
-
0034596989
-
Transcriptional silencing and promoter methylation triggered by double-stranded RNA
-
PMID:11013221
-
Mette MF, Aufsatz W, van der Winden J, Matzke MA, Matzke AJ. Transcriptional silencing and promoter methylation triggered by double-stranded RNA. EMBO J 2000; 19:5194-5201; PMID:11013221; http://dx.doi.org/10.1093/emboj/19.19.5194.
-
(2000)
EMBO J
, vol.19
, pp. 5194-5201
-
-
Mette, M.F.1
Aufsatz, W.2
van der Winden, J.3
Matzke, M.A.4
Matzke, A.J.5
-
59
-
-
25144439545
-
Analysis of double-stranded RNA and small RNAs involved in RNA-mediated transcriptional gene silencing
-
PMID:15990398
-
Mette MF, Aufsatz W, Kanno T, Daxinger L, Rovina P, Matzke M, et al. Analysis of double-stranded RNA and small RNAs involved in RNA-mediated transcriptional gene silencing. Methods Mol Biol 2005; 309:61-82; PMID:15990398.
-
(2005)
Methods Mol Biol
, vol.309
, pp. 61-82
-
-
Mette, M.F.1
Aufsatz, W.2
Kanno, T.3
Daxinger, L.4
Rovina, P.5
Matzke, M.6
-
60
-
-
0040241402
-
Genomic sequencing
-
PMID:6326095
-
Church GM, Gilbert W. Genomic sequencing. Proc Natl Acad Sci U S A 1984; 81:1991-1995; PMID:6326095; http://dx.doi.org/10.1073/pnas.81.7.1991.
-
(1984)
Proc Natl Acad Sci U S A
, vol.81
, pp. 1991-1995
-
-
Church, G.M.1
Gilbert, W.2
|