Rapid injection linear dichroism for studying the kinetics of biological processes

Analytical Chemistry

Volumn 84, Issue 15, 2012, Pages 6561-6566

  Hicks, Matthew R ^a   Rodger, Alison ^a   Lin, Yu Pin ^b   Jones, Nykola C ^c   Hoffmann, Søren Vrønning ^c   Dafforn, Timothy R ^b  

^a UNIVERSITY OF WARWICK   (United Kingdom)

^b UNIVERSITY OF BIRMINGHAM   (United Kingdom)

^c AARHUS UNIVERSITY   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

ALIGNED SAMPLES; BIOLOGICAL PROCESS; BIOMOLECULAR COMPLEXES; CONVENTIONAL SYSTEMS; COUETTE CELL; COUETTE FLOW CELLS; COUETTE SYSTEMS; DEAD TIME; DIFFERENTIAL ABSORBANCE; DNA-PROTEIN COMPLEXES; EXONUCLEASE; LINEAR DICHROISM; LINEARLY POLARIZED LIGHT; OPTICAL CHARACTERISTICS; ORTHOGONAL DIRECTIONS; PEPTIDE FIBERS; POLARIZATION DIRECTION; RAPID REACTIONS; STOPPED FLOW INJECTION; STRUCTURAL INFORMATION;

CELLS; CYTOLOGY; DEGRADATION; DICHROISM; PROTEINS;

CHROMOPHORES;

DNA; EXODEOXYRIBONUCLEASE;

ARTICLE; CHEMISTRY; CIRCULAR DICHROISM; INSTRUMENTATION; KINETICS; METABOLISM; METHODOLOGY; TIME;

CIRCULAR DICHROISM; DNA; EXODEOXYRIBONUCLEASES; KINETICS; TIME FACTORS;

EID: 84864632973     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac300842h     Document Type: Article

References (24)

1. Marrington, R.; Dafforn, T. R.; Halsall, D. J.; Rodger, A. Micro-volume couette flow sample orientation for absorbance and fluorescence linear dichroism Biophys. J. 2004, 87 (3) 2002-12
2. Rittman, M.; Hoffmann, S. V.; Gilroy, E.; Hicks, M. R.; Finkenstadt, B.; Rodger, A. Probing the structure of long DNA molecules in solution using synchrotron radiation linear dichroism Phys. Chem. Chem. Phys. 2012, 14 (1) 353-66
3. Hicks, M. R.; Dafforn, T. R.; Damianoglou, A.; Wormell, P.; Rodger, A.; Hoffmann, S. V. Synchrotron radiation linear dichroism spectroscopy of the antibiotic peptide gramicidin in lipid membranes The Analyst 2009, 134 (8) 1623-8
4. Dicko, C.; Hicks, M. R.; Dafforn, T. R.; Vollrath, F.; Rodger, A.; Hoffmann, S. V. Breaking the 200 nm limit for routine flow linear dichroism measurements using UV synchrotron radiation Biophys. J. 2008, 95 (12) 5974-7
5. Dafforn, T. R.; Rajendra, J.; Halsall, D. J.; Serpell, L. C.; Rodger, A. Protein fiber linear dichroism for structure determination and kinetics in a low-volume, low-wavelength couette flow cell Biophys. J. 2004, 86 (1) 404-10
6. Szczesna, D.; Lehrer, S. S. Linear dichroism of acrylodan-labeled tropomyosin and myosin subfragment 1 bound to actin in myofibrils Biophys. J. 1992, 61 (4) 993-1000
7. Marrington, R.; Seymour, M.; Rodger, A. A new method for fibrous protein analysis illustrated by application to tubulin microtubule polymerisation and depolymerisation Chirality 2006, 18 (9) 680-90
8. Takahashi, M.; Kubista, M.; Norden, B. Co-ordination of multiple DNA molecules in RecA fiber evidenced by linear dichroism spectroscopy Biochimie 1991, 73 (2-3) 219-26
9. Norden, B.; Wittung-Stafshede, P.; Ellouze, C.; Kim, H. K.; Mortensen, K.; Takahashi, M. Base orientation of second DNA in RecA.DNA filaments. Analysis by combination of linear dichroism and small angle neutron scattering in flow-oriented solution J. Biol. Chem. 1998, 273 (25) 15682-6
10. Marshall, K. E.; Hicks, M. R.; Williams, T. L.; Hoffmann, S. V.; Rodger, A.; Dafforn, T. R.; Serpell, L. C. Characterizing the Assembly of the Sup35 Yeast Prion Fragment, GNNQQNY: Structural Changes Accompany a Fiber-to-Crystal Switch Biophys. J. 2010, 98 (2) 330-338
11. Clack, B. A.; Gray, D. M. Flow linear dichroism spectra of four filamentous bacteriophages: DNA and coat protein contributions Biopolymers 1992, 32 (7) 795-810
12. Marrington, R.; Small, E.; Rodger, A.; Dafforn, T. R.; Addinall, S. G. FtsZ fiber bundling is triggered by a conformational change in bound GTP J. Biol. Chem. 2004, 279 (47) 48821-9
13. Pacheco-Gomez, R.; Roper, D. I.; Dafforn, T. R.; Rodger, A. The pH dependence of polymerization and bundling by the essential bacterial cytoskeltal protein FtsZ PloS One 2011, 6 (6) e19369
14. Small, E.; Marrington, R.; Rodger, A.; Scott, D. J.; Sloan, K.; Roper, D.; Dafforn, T. R.; Addinall, S. G. FtsZ polymer-bundling by the Escherichia coli ZapA orthologue, YgfE, involves a conformational change in bound GTP J. Mol. Biol. 2007, 369 (1) 210-21
15. Ardhammar, M.; Mikati, N.; Norden, B. Chromophore orientation in liposomembranes probed with flow linear dichroism J. Am. Chem. Soc. 1998, 120, 9957-9958
16. Rodger, A. Flow oriented linear dichroism to probe protein orientation in membrane environments Phys. Chem. Chem. Phys. 2002, 4, 4051-4057
17. Hicks, M. R.; Damianoglou, A.; Rodger, A.; Dafforn, T. R. Folding and membrane insertion of the pore-forming peptide gramicidin occur as a concerted process J. Mol. Biol. 2008, 383 (2) 358-66
18. Damianoglou, A.; Rodger, A.; Pridmore, C.; Dafforn, T. R.; Mosely, J. A.; Sanderson, J. M.; Hicks, M. R. The Synergistic Action of Melittin and Phospholipase A2 with Lipid Membranes: Development of Linear Dichroism for Membrane-Insertion Kinetics Protein Pept. Lett. 2010, 17 (11) 1351-1362
19. Chou, P. J.; Johnson, W. C., Jr. Base inclinations in natural and synthetic DNAs J. Am. Chem. Soc. 1993, 115, 1205-1214
20. Rodger, A.; Blagbrough, I. S.; Adlam, G.; Carpenter, M. L. DNA binding of a spermine derivative: spectroscopic study of anthracene-9-carbonyl-N1-spermine with poly[d(G-C).(d(G-C)] and poly[d(A-T).d(A-T)] Biopolymers 1994, 34 (12) 1583-93
21. Patel, K. K.; Plummer, E. A.; Darwish, M.; Rodger, A.; Hannon, M. J. Aryl substituted ruthenium bis-terpyridine complexes: intercalation and groove binding with DNA J. Inorg. Biochem. 2002, 91 (1) 220-9
22. Hicks, M. R.; Rodger, A.; Thomas, C. M.; Batt, S. M.; Dafforn, T. R. Restriction enzyme kinetics monitored by UV linear dichroism Biochemistry 2006, 45 (29) 8912-7
23. Gilroy, E. L.; Hoffmann, S. V.; Jones, N. C.; Rodger, A. Is photocleavage of DNA by YOYO-1 using a synchrotron radiation light source sequence dependent? Eur. Biophys. J. 2011, 40 (10) 1121-9
24. Simonson, T.; Kubista, M. DNA orientation in shear flow Biopolymers 1993, 33, 1225-1235