메뉴 건너뛰기




Volumn 8, Issue 7, 2012, Pages

The Caenorhabditis elegans gene mfap-1 encodes a nuclear protein that affects alternative splicing

Author keywords

[No Author keywords available]

Indexed keywords

MICROFIBRILLAR ASSOCIATED PROTEIN 1; NUCLEAR PROTEIN; UNCLASSIFIED DRUG;

EID: 84864580596     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1002827     Document Type: Article
Times cited : (23)

References (50)
  • 1
    • 75849145292 scopus 로고    scopus 로고
    • Expansion of the eukaryotic proteome by alternative splicing
    • Nilsen TW, Graveley BR, (2010) Expansion of the eukaryotic proteome by alternative splicing. Nature 463: 457-463.
    • (2010) Nature , vol.463 , pp. 457-463
    • Nilsen, T.W.1    Graveley, B.R.2
  • 2
    • 0037062982 scopus 로고    scopus 로고
    • Alternative pre-mRNA splicing and proteome expansion in metazoans
    • Maniatis T, Tasic B, (2002) Alternative pre-mRNA splicing and proteome expansion in metazoans. Nature 418: 236-243.
    • (2002) Nature , vol.418 , pp. 236-243
    • Maniatis, T.1    Tasic, B.2
  • 3
    • 0042671357 scopus 로고    scopus 로고
    • Pre-mRNA splicing: awash in a sea of proteins
    • Jurica MS, Moore MJ, (2003) Pre-mRNA splicing: awash in a sea of proteins. Mol Cell 12: 5-14.
    • (2003) Mol Cell , vol.12 , pp. 5-14
    • Jurica, M.S.1    Moore, M.J.2
  • 4
    • 0030911051 scopus 로고    scopus 로고
    • Cross-intron bridging interactions in the yeast commitment complex are conserved in mammals
    • Abovich N, Rosbash M, (1997) Cross-intron bridging interactions in the yeast commitment complex are conserved in mammals. Cell 89: 403-412.
    • (1997) Cell , vol.89 , pp. 403-412
    • Abovich, N.1    Rosbash, M.2
  • 5
    • 0029949698 scopus 로고    scopus 로고
    • Mammalian splicing factor SF1 is encoded by variant cDNAs and binds to RNA
    • Arning S, Gruter P, Bilbe G, Kramer A, (1996) Mammalian splicing factor SF1 is encoded by variant cDNAs and binds to RNA. RNA 2: 794-810.
    • (1996) RNA , vol.2 , pp. 794-810
    • Arning, S.1    Gruter, P.2    Bilbe, G.3    Kramer, A.4
  • 6
    • 0022135603 scopus 로고
    • Multiple factors including the small nuclear ribonucleoproteins U1 and U2 are necessary for pre-mRNA splicing in vitro
    • Krainer AR, Maniatis T, (1985) Multiple factors including the small nuclear ribonucleoproteins U1 and U2 are necessary for pre-mRNA splicing in vitro. Cell 42: 725-736.
    • (1985) Cell , vol.42 , pp. 725-736
    • Krainer, A.R.1    Maniatis, T.2
  • 7
    • 0028556367 scopus 로고
    • Dynamic RNA-RNA interactions in the spliceosome
    • Madhani HD, Guthrie C, (1994) Dynamic RNA-RNA interactions in the spliceosome. Annu Rev Genet 28: 1-26.
    • (1994) Annu Rev Genet , vol.28 , pp. 1-26
    • Madhani, H.D.1    Guthrie, C.2
  • 8
    • 0033576625 scopus 로고    scopus 로고
    • Inhibition of msl-2 splicing by Sex-lethal reveals interaction between U2AF35 and the 3′ splice site AG
    • Merendino L, Guth S, Bilbao D, Martinez C, Valcarcel J, (1999) Inhibition of msl-2 splicing by Sex-lethal reveals interaction between U2AF35 and the 3′ splice site AG. Nature 402: 838-841.
    • (1999) Nature , vol.402 , pp. 838-841
    • Merendino, L.1    Guth, S.2    Bilbao, D.3    Martinez, C.4    Valcarcel, J.5
  • 9
    • 0033576626 scopus 로고    scopus 로고
    • Functional recognition of the 3′ splice site AG by the splicing factor U2AF35
    • Wu S, Romfo CM, Nilsen TW, Green MR, (1999) Functional recognition of the 3′ splice site AG by the splicing factor U2AF35. Nature 402: 832-835.
    • (1999) Nature , vol.402 , pp. 832-835
    • Wu, S.1    Romfo, C.M.2    Nilsen, T.W.3    Green, M.R.4
  • 10
    • 0026026981 scopus 로고
    • Biochemical characterization of U2 snRNP auxiliary factor: an essential pre-mRNA splicing factor with a novel intranuclear distribution
    • Zamore PD, Green MR, (1991) Biochemical characterization of U2 snRNP auxiliary factor: an essential pre-mRNA splicing factor with a novel intranuclear distribution. EMBO J 10: 207-214.
    • (1991) EMBO J , vol.10 , pp. 207-214
    • Zamore, P.D.1    Green, M.R.2
  • 11
    • 0033576591 scopus 로고    scopus 로고
    • Both subunits of U2AF recognize the 3′ splice site in Caenorhabditis elegans
    • Zorio DA, Blumenthal T, (1999) Both subunits of U2AF recognize the 3′ splice site in Caenorhabditis elegans. Nature 402: 835-838.
    • (1999) Nature , vol.402 , pp. 835-838
    • Zorio, D.A.1    Blumenthal, T.2
  • 12
    • 0034069505 scopus 로고    scopus 로고
    • Mechanisms of fidelity in pre-mRNA splicing
    • Reed R, (2000) Mechanisms of fidelity in pre-mRNA splicing. Curr Opin Cell Biol 12: 340-345.
    • (2000) Curr Opin Cell Biol , vol.12 , pp. 340-345
    • Reed, R.1
  • 14
    • 34548758543 scopus 로고    scopus 로고
    • Splicing in disease: disruption of the splicing code and the decoding machinery
    • Wang GS, Cooper TA, (2007) Splicing in disease: disruption of the splicing code and the decoding machinery. Nat Rev Genet 8: 749-761.
    • (2007) Nat Rev Genet , vol.8 , pp. 749-761
    • Wang, G.S.1    Cooper, T.A.2
  • 15
    • 0034529379 scopus 로고    scopus 로고
    • Kinetic role for mammalian SF1/BBP in spliceosome assembly and function after polypyrimidine tract recognition by U2AF
    • Guth S, Valcarcel J, (2000) Kinetic role for mammalian SF1/BBP in spliceosome assembly and function after polypyrimidine tract recognition by U2AF. J Biol Chem 275: 38059-38066.
    • (2000) J Biol Chem , vol.275 , pp. 38059-38066
    • Guth, S.1    Valcarcel, J.2
  • 16
    • 0345593813 scopus 로고    scopus 로고
    • Transient interaction of BBP/ScSF1 and Mud2 with the splicing machinery affects the kinetics of spliceosome assembly
    • Rutz B, Seraphin B, (1999) Transient interaction of BBP/ScSF1 and Mud2 with the splicing machinery affects the kinetics of spliceosome assembly. RNA 5: 819-831.
    • (1999) RNA , vol.5 , pp. 819-831
    • Rutz, B.1    Seraphin, B.2
  • 17
    • 14844312915 scopus 로고    scopus 로고
    • Human splicing factor SF3a, but not SF1, is essential for pre-mRNA splicing in vivo
    • Tanackovic G, Kramer A, (2005) Human splicing factor SF3a, but not SF1, is essential for pre-mRNA splicing in vivo. Mol Biol Cell 16: 1366-1377.
    • (2005) Mol Biol Cell , vol.16 , pp. 1366-1377
    • Tanackovic, G.1    Kramer, A.2
  • 18
    • 34247255773 scopus 로고    scopus 로고
    • Transcript specificity in yeast pre-mRNA splicing revealed by mutations in core spliceosomal components
    • doi:10.1371/journal.pbio.0050090
    • Pleiss JA, Whitworth GB, Bergkessel M, Guthrie C, (2007) Transcript specificity in yeast pre-mRNA splicing revealed by mutations in core spliceosomal components. PLoS Biol 5: e90 doi:10.1371/journal.pbio.0050090.
    • (2007) PLoS Biol , vol.5
    • Pleiss, J.A.1    Whitworth, G.B.2    Bergkessel, M.3    Guthrie, C.4
  • 19
    • 2942648436 scopus 로고    scopus 로고
    • Genome-wide analysis reveals an unexpected function for the Drosophila splicing factor U2AF50 in the nuclear export of intronless mRNAs
    • Blanchette M, Labourier E, Green RE, Brenner SE, Rio DC, (2004) Genome-wide analysis reveals an unexpected function for the Drosophila splicing factor U2AF50 in the nuclear export of intronless mRNAs. Mol Cell 14: 775-786.
    • (2004) Mol Cell , vol.14 , pp. 775-786
    • Blanchette, M.1    Labourier, E.2    Green, R.E.3    Brenner, S.E.4    Rio, D.C.5
  • 20
    • 0141885134 scopus 로고    scopus 로고
    • sup-9, sup-10, and unc-93 may encode components of a two-pore K+ channel that coordinates muscle contraction in Caenorhabditis elegans
    • de la Cruz IP, Levin JZ, Cummins C, Anderson P, Horvitz HR, (2003) sup-9, sup-10, and unc-93 may encode components of a two-pore K+ channel that coordinates muscle contraction in Caenorhabditis elegans. J Neurosci 23: 9133-9145.
    • (2003) J Neurosci , vol.23 , pp. 9133-9145
    • de la Cruz, I.P.1    Levin, J.Z.2    Cummins, C.3    Anderson, P.4    Horvitz, H.R.5
  • 21
    • 0022721739 scopus 로고
    • A visible allele of the muscle gene sup-10 X of C. elegans
    • Greenwald I, Horvitz HR, (1986) A visible allele of the muscle gene sup-10 X of C. elegans. Genetics 113: 63-72.
    • (1986) Genetics , vol.113 , pp. 63-72
    • Greenwald, I.1    Horvitz, H.R.2
  • 22
    • 0019061841 scopus 로고
    • unc-93(e1500): A behavioral mutant of Caenorhabditis elegans that defines a gene with a wild-type null phenotype
    • Greenwald IS, Horvitz HR, (1980) unc-93(e1500): A behavioral mutant of Caenorhabditis elegans that defines a gene with a wild-type null phenotype. Genetics 96: 147-164.
    • (1980) Genetics , vol.96 , pp. 147-164
    • Greenwald, I.S.1    Horvitz, H.R.2
  • 23
    • 0026532236 scopus 로고
    • The Caenorhabditis elegans unc-93 gene encodes a putative transmembrane protein that regulates muscle contraction
    • Levin JZ, Horvitz HR, (1992) The Caenorhabditis elegans unc-93 gene encodes a putative transmembrane protein that regulates muscle contraction. J Cell Biol 117: 143-155.
    • (1992) J Cell Biol , vol.117 , pp. 143-155
    • Levin, J.Z.1    Horvitz, H.R.2
  • 24
    • 34247484007 scopus 로고    scopus 로고
    • The interaction between the ER membrane protein UNC93B and TLR3, 7, and 9 is crucial for TLR signaling
    • Brinkmann MM, Spooner E, Hoebe K, Beutler B, Ploegh HL, et al. (2007) The interaction between the ER membrane protein UNC93B and TLR3, 7, and 9 is crucial for TLR signaling. J Cell Biol 177: 265-275.
    • (2007) J Cell Biol , vol.177 , pp. 265-275
    • Brinkmann, M.M.1    Spooner, E.2    Hoebe, K.3    Beutler, B.4    Ploegh, H.L.5
  • 25
    • 33750016788 scopus 로고    scopus 로고
    • Herpes simplex virus encephalitis in human UNC-93B deficiency
    • Casrouge A, Zhang SY, Eidenschenk C, Jouanguy E, Puel A, et al. (2006) Herpes simplex virus encephalitis in human UNC-93B deficiency. Science 314: 308-312.
    • (2006) Science , vol.314 , pp. 308-312
    • Casrouge, A.1    Zhang, S.Y.2    Eidenschenk, C.3    Jouanguy, E.4    Puel, A.5
  • 26
    • 40749098665 scopus 로고    scopus 로고
    • UNC93B1 delivers nucleotide-sensing toll-like receptors to endolysosomes
    • Kim YM, Brinkmann MM, Paquet ME, Ploegh HL, (2008) UNC93B1 delivers nucleotide-sensing toll-like receptors to endolysosomes. Nature 452: 234-238.
    • (2008) Nature , vol.452 , pp. 234-238
    • Kim, Y.M.1    Brinkmann, M.M.2    Paquet, M.E.3    Ploegh, H.L.4
  • 27
    • 36849020513 scopus 로고    scopus 로고
    • Assessing the function of human UNC-93B in Toll-like receptor signaling and major histocompatibility complex II response
    • Koehn J, Huesken D, Jaritz M, Rot A, Zurini M, et al. (2007) Assessing the function of human UNC-93B in Toll-like receptor signaling and major histocompatibility complex II response. Hum Immunol 68: 871-878.
    • (2007) Hum Immunol , vol.68 , pp. 871-878
    • Koehn, J.1    Huesken, D.2    Jaritz, M.3    Rot, A.4    Zurini, M.5
  • 28
    • 31344466165 scopus 로고    scopus 로고
    • The Unc93b1 mutation 3d disrupts exogenous antigen presentation and signaling via Toll-like receptors 3, 7 and 9
    • Tabeta K, Hoebe K, Janssen EM, Du X, Georgel P, et al. (2006) The Unc93b1 mutation 3d disrupts exogenous antigen presentation and signaling via Toll-like receptors 3, 7 and 9. Nat Immunol 7: 156-164.
    • (2006) Nat Immunol , vol.7 , pp. 156-164
    • Tabeta, K.1    Hoebe, K.2    Janssen, E.M.3    Du, X.4    Georgel, P.5
  • 29
    • 73649087945 scopus 로고    scopus 로고
    • Mutations in the Caenorhabditis elegans U2AF large subunit UAF-1 alter the choice of a 3′ splice site in vivo
    • doi:10.1371/journal.pgen.1000708
    • Ma L, Horvitz HR, (2009) Mutations in the Caenorhabditis elegans U2AF large subunit UAF-1 alter the choice of a 3′ splice site in vivo. PLoS Genet 5: e1000708 doi:10.1371/journal.pgen.1000708.
    • (2009) PLoS Genet , vol.5
    • Ma, L.1    Horvitz, H.R.2
  • 30
    • 81755161587 scopus 로고    scopus 로고
    • In vivo effects on intron retention and exon skipping by the U2AF large subunit and SF1/BBP in the nematode Caenorhabditis elegans
    • Ma L, Tan Z, Teng Y, Hoersch S, Horvitz HR, (2011) In vivo effects on intron retention and exon skipping by the U2AF large subunit and SF1/BBP in the nematode Caenorhabditis elegans. RNA 17: 2201-2211.
    • (2011) RNA , vol.17 , pp. 2201-2211
    • Ma, L.1    Tan, Z.2    Teng, Y.3    Hoersch, S.4    Horvitz, H.R.5
  • 31
    • 0027216508 scopus 로고
    • Three new classes of mutations in the Caenorhabditis elegans muscle gene sup-9
    • Levin JZ, Horvitz HR, (1993) Three new classes of mutations in the Caenorhabditis elegans muscle gene sup-9. Genetics 135: 53-70.
    • (1993) Genetics , vol.135 , pp. 53-70
    • Levin, J.Z.1    Horvitz, H.R.2
  • 32
    • 0026667717 scopus 로고
    • Characterization of an associated microfibril protein through recombinant DNA techniques
    • Horrigan SK, Rich CB, Streeten BW, Li ZY, Foster JA, (1992) Characterization of an associated microfibril protein through recombinant DNA techniques. J Biol Chem 267: 10087-10095.
    • (1992) J Biol Chem , vol.267 , pp. 10087-10095
    • Horrigan, S.K.1    Rich, C.B.2    Streeten, B.W.3    Li, Z.Y.4    Foster, J.A.5
  • 33
    • 57649156012 scopus 로고    scopus 로고
    • Drosophila MFAP1 is required for pre-mRNA processing and G2/M progression
    • Andersen DS, Tapon N, (2008) Drosophila MFAP1 is required for pre-mRNA processing and G2/M progression. J Biol Chem 283: 31256-31267.
    • (2008) J Biol Chem , vol.283 , pp. 31256-31267
    • Andersen, D.S.1    Tapon, N.2
  • 34
    • 0042208446 scopus 로고    scopus 로고
    • Genetic interactions with CLF1 identify additional pre-mRNA splicing factors and a link between activators of yeast vesicular transport and splicing
    • Vincent K, Wang Q, Jay S, Hobbs K, Rymond BC, (2003) Genetic interactions with CLF1 identify additional pre-mRNA splicing factors and a link between activators of yeast vesicular transport and splicing. Genetics 164: 895-907.
    • (2003) Genetics , vol.164 , pp. 895-907
    • Vincent, K.1    Wang, Q.2    Jay, S.3    Hobbs, K.4    Rymond, B.C.5
  • 35
    • 0026663165 scopus 로고
    • PRP38 encodes a yeast protein required for pre-mRNA splicing and maintenance of stable U6 small nuclear RNA levels
    • Blanton S, Srinivasan A, Rymond BC, (1992) PRP38 encodes a yeast protein required for pre-mRNA splicing and maintenance of stable U6 small nuclear RNA levels. Mol Cell Biol 12: 3939-3947.
    • (1992) Mol Cell Biol , vol.12 , pp. 3939-3947
    • Blanton, S.1    Srinivasan, A.2    Rymond, B.C.3
  • 36
    • 0037073946 scopus 로고    scopus 로고
    • Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome
    • Makarov EM, Makarova OV, Urlaub H, Gentzel M, Will CL, et al. (2002) Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome. Science 298: 2205-2208.
    • (2002) Science , vol.298 , pp. 2205-2208
    • Makarov, E.M.1    Makarova, O.V.2    Urlaub, H.3    Gentzel, M.4    Will, C.L.5
  • 37
    • 0036674269 scopus 로고    scopus 로고
    • Large-scale proteomic analysis of the human spliceosome
    • Rappsilber J, Ryder U, Lamond AI, Mann M, (2002) Large-scale proteomic analysis of the human spliceosome. Genome Res 12: 1231-1245.
    • (2002) Genome Res , vol.12 , pp. 1231-1245
    • Rappsilber, J.1    Ryder, U.2    Lamond, A.I.3    Mann, M.4
  • 38
    • 0037068447 scopus 로고    scopus 로고
    • Comprehensive proteomic analysis of the human spliceosome
    • Zhou Z, Licklider LJ, Gygi SP, Reed R, (2002) Comprehensive proteomic analysis of the human spliceosome. Nature 419: 182-185.
    • (2002) Nature , vol.419 , pp. 182-185
    • Zhou, Z.1    Licklider, L.J.2    Gygi, S.P.3    Reed, R.4
  • 39
    • 0016063911 scopus 로고
    • The genetics of Caenorhabditis elegans
    • Brenner S, (1974) The genetics of Caenorhabditis elegans. Genetics 77: 71-94.
    • (1974) Genetics , vol.77 , pp. 71-94
    • Brenner, S.1
  • 40
    • 0034978075 scopus 로고    scopus 로고
    • Rapid gene mapping in Caenorhabditis elegans using a high density polymorphism map
    • Wicks SR, Yeh RT, Gish WR, Waterston RH, Plasterk RH, (2001) Rapid gene mapping in Caenorhabditis elegans using a high density polymorphism map. Nat Genet 28: 160-164.
    • (2001) Nat Genet , vol.28 , pp. 160-164
    • Wicks, S.R.1    Yeh, R.T.2    Gish, W.R.3    Waterston, R.H.4    Plasterk, R.H.5
  • 41
    • 0027154645 scopus 로고
    • Two types of sites required for meiotic chromosome pairing in Caenorhabditis elegans
    • McKim KS, Peters K, Rose AM, (1993) Two types of sites required for meiotic chromosome pairing in Caenorhabditis elegans. Genetics 134: 749-768.
    • (1993) Genetics , vol.134 , pp. 749-768
    • McKim, K.S.1    Peters, K.2    Rose, A.M.3
  • 43
    • 0025940629 scopus 로고
    • The two-hybrid system: a method to identify and clone genes for proteins that interact with a protein of interest
    • Chien CT, Bartel PL, Sternglanz R, Fields S, (1991) The two-hybrid system: a method to identify and clone genes for proteins that interact with a protein of interest. Proc Natl Acad Sci U S A 88: 9578-9582.
    • (1991) Proc Natl Acad Sci U S A , vol.88 , pp. 9578-9582
    • Chien, C.T.1    Bartel, P.L.2    Sternglanz, R.3    Fields, S.4
  • 44
    • 0024406857 scopus 로고
    • A novel genetic system to detect protein-protein interactions
    • Fields S, Song O, (1989) A novel genetic system to detect protein-protein interactions. Nature 340: 245-246.
    • (1989) Nature , vol.340 , pp. 245-246
    • Fields, S.1    Song, O.2
  • 45
  • 46
    • 0035941485 scopus 로고    scopus 로고
    • Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans
    • Timmons L, Court DL, Fire A, (2001) Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans. Gene 263: 103-112.
    • (2001) Gene , vol.263 , pp. 103-112
    • Timmons, L.1    Court, D.L.2    Fire, A.3
  • 47
    • 0037448540 scopus 로고    scopus 로고
    • Systematic functional analysis of the Caenorhabditis elegans genome using RNAi
    • Kamath RS, Fraser AG, Dong Y, Poulin G, Durbin R, et al. (2003) Systematic functional analysis of the Caenorhabditis elegans genome using RNAi. Nature 421: 231-237.
    • (2003) Nature , vol.421 , pp. 231-237
    • Kamath, R.S.1    Fraser, A.G.2    Dong, Y.3    Poulin, G.4    Durbin, R.5
  • 48
    • 7444270371 scopus 로고    scopus 로고
    • Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library
    • Rual JF, Ceron J, Koreth J, Hao T, Nicot AS, et al. (2004) Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library. Genome Res 14: 2162-2168.
    • (2004) Genome Res , vol.14 , pp. 2162-2168
    • Rual, J.F.1    Ceron, J.2    Koreth, J.3    Hao, T.4    Nicot, A.S.5
  • 49
    • 0033714116 scopus 로고    scopus 로고
    • C. elegans locomotory rate is modulated by the environment through a dopaminergic pathway and by experience through a serotonergic pathway
    • Sawin ER, Ranganathan R, Horvitz HR, (2000) C. elegans locomotory rate is modulated by the environment through a dopaminergic pathway and by experience through a serotonergic pathway. Neuron 26: 619-631.
    • (2000) Neuron , vol.26 , pp. 619-631
    • Sawin, E.R.1    Ranganathan, R.2    Horvitz, H.R.3
  • 50
    • 0025942107 scopus 로고
    • Efficient gene transfer in C.elegans: extrachromosomal maintenance and integration of transforming sequences
    • Mello CC, Kramer JM, Stinchcomb D, Ambros V, (1991) Efficient gene transfer in C.elegans: extrachromosomal maintenance and integration of transforming sequences. EMBO J 10: 3959-3970.
    • (1991) EMBO J , vol.10 , pp. 3959-3970
    • Mello, C.C.1    Kramer, J.M.2    Stinchcomb, D.3    Ambros, V.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.