Cryptic diversity among Western Palearctic tree frogs: Postglacial range expansion, range limits, and secondary contacts of three European tree frog lineages (Hyla arborea group)

Molecular Phylogenetics and Evolution

Volumn 65, Issue 1, 2012, Pages 1-9

  Stöck, Matthias ^a,b   Dufresnes, Christophe ^a   Litvinchuk, Spartak N ^c   Lymberakis, Petros ^d   Biollay, Sébastien ^a   Berroneau, Matthieu ^e   Borzée, Amaël ^a   Ghali, Karim ^a,f   Ogielska, Maria ^g   Perrin, Nicolas ^a  

^a UNIVERSITY OF LAUSANNE   (Switzerland)

^b LEIBNIZ INSTITUTE OF FRESHWATER ECOLOGY AND INLAND FISHERIES   (Germany)

^c INSTITUTE OF CYTOLOGY   (Russian Federation)

^d UNIVERSITY OF CRETE   (Greece)

^e Chemin du Moulinat   (France)

^f Vivarium Lausanne   (Switzerland)

^g UNIVERSITY OF WROC AW   (Poland)

Author keywords

Contact zone; Divergence time; Diversity; Phylogeography; Range expansion

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ANURA; ARTICLE; BAYES THEOREM; BIODIVERSITY; CELL NUCLEUS; CLASSIFICATION; DNA SEQUENCE; EUROPE; EVOLUTION; GENETIC VARIABILITY; GENETICS; PHYLOGENY; STATISTICAL MODEL;

ANIMALS; ANURA; BAYES THEOREM; BIODIVERSITY; BIOLOGICAL EVOLUTION; CELL NUCLEUS; DNA, MITOCHONDRIAL; EUROPE; GENETIC VARIATION; LIKELIHOOD FUNCTIONS; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

ANURA; HYLA; HYLA ARBOREA; HYLA MERIDIONALIS; HYLA SAVIGNYI; HYLIDAE;

EID: 84864541577     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2012.05.014     Document Type: Article

References (46)

1. Barbadillo L.J., Lapena M. Hibridacion natural de Hyla arborea Linnaeus, 1758. e Hyla meridionalis Boettger, 1874) en la Peninsula Ibérica. Munibe 2003, 16:140-145.
2. Barth A., Galan P., Donaire D., Gonzalez de la Vega J.P., Pabijan M., Vences V. Mitochondrial uniformity in populations of the treefrog Hyla molleri across the Iberian Peninsula. Amph. Rept. 2011, 32:557-564.
3. Bisconti R., Canestrelli R., Colangelo P., Nascetti G. Multiple lines of evidence for demographic and range expansion of a temperate species (Hyla sarda) during the last glaciation. Mol. Ecol. 2011, 20:5313-5327.
4. Borzée, A., 2010. Secondary Contacts of Two Tree Frog Taxa from the Hyla arborea group. Unpubl. Master Thesis, Behav., Evol., Conserv., School of Biol., Univ. of Lausanne.
5. Canestrelli D., Cimmurata R., Nascetti G. Phylogeography and historical demography of the Italian treefrog, Hyla intermedia, reveals multiple refugia, population expansions and secondary contacts within peninsular Italy. Mol. Ecol. 2007, 16:4808-4821.
6. Clement M., Posada D., Crandall K. TCS: a computer program to estimate gene genealogies. Mol. Ecol. 2000, 9:1657-1660.
7. Drummond A.J., Ho S.Y.W., Phillips M.J., Rambaut A. Relaxed phylogenetics and dating with confidence. PLoS Biol. 2006, 4:699-710.
8. Drummond, A.J., Ho, S.Y.W., Rawlence, N., Rambaut, A., 2007. A Rough Guide to BEAST 1.4. http://code.google.com/p/beast-mcmc/downloads/list.
9. Dubois A. The valid scientific name of the Italian treefrog, with comments on the status of some early scientific names of Amphibia, Anura, and on some articles of the Code concerning secondary homonyms. Dumerilia 1996, 2:55-71.
10. Faivovich J., Haddad C.F.B., Garcia P.C.A., Frost D.R., Campbell J.A., Wheeler W.C. Systematic review of the frog family Hylidae, with special reference to Hylinae: phylogenetic analysis and taxonomic revision. Bull. Am. Mus. Nat. Hist. 2005, 294:1-240.
11. Fijarczyk A., Nadachowska K., Hofman S., Litvinchuk S.N., Babik W., Stuglik M., Gollmann G., Choleva L.S., Cogalniceanu D., Vukov T., Dzukic G., Szymura J.M. Nuclear and mitochondrial phylogeography of the European fire-bellied toads Bombina bombina and Bombina variegata supports their independent histories. Mol. Ecol. 2011, 20:3381-3398.
12. Garcia-Porta J., Litvinchuk S.N., Crochet P.A., Romano A., Geniez P.H., Lo-Valvo M., Lymberakis P., Carranza S. Molecular phylogenetics and historical biogeography of the west-palearctic common toads (Bufo bufo species complex). Mol. Phylogen. Evol. 2012, 63:113-130.
13. Gouy M., Guindon S., Gascuel O. SeaView version 4.0: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol. Phylogenet. Evol. 2010, 27:221-224.
14. Guindon S., Dufayard J.F., Lefort V., Anisimova M., Hordijk W., Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 2010, 59:307-321.
15. Gvozdik V., Moravec J., Klütsch C., Kotlik P. Phylogeography of the Middle Eastern tree frogs Hyla, Hylidae, Amphibia) as inferred from nuclear and mitochondrial DNA variation, with a description of a new species. Mol. Phylogenet. Evol. 2010, 55:1146-1166.
16. Hauswaldt J.S., Angelini C., Pollok A., Steinfartz S. Hybridization of two ancient salamander lineages: molecular evidence for endemic spectacled salamanders on the Apennine Peninsula. J. Zool. 2011, 284:248-256.
17. Hewitt G.M. Post-glacial recolonization of European Biota. Biol. J. Linn. Soc. 1999, 68:87-112.
18. Hewitt G.M. The structure of biodiversity - insights from molecular phylogeography. Front. Zool. 2004, 1:4.
19. Hewitt G.F. Quaternary phylogeography: the roots of hybrid zones. Genetica 2011, 139:617-638.
20. Hoegg S., Vences M., Brinkmann H., Meyer A. Phylogeny and comparative substitution rates of frogs inferred from sequences of three nuclear genes. Mol. Biol. Evol. 2004, 21:1188-1200.
21. Hof C., Arujo M.B., Jetz W., Rahbeck C. Additive threats from pathogens, climate and land-use change for global amphibian diversity. Nature 2011, 480:516-521.
22. Hoffmann M., Hilton-Taylor C., Angulo A., Böhm M., Brooks T.M., et al. The impact of conservation on the status of the world's vertebrates. Science 2010, 330:1503-1509.
23. Hofman S., Spolsky C., Uzzell T., Cogalniceanu D., Babik W., Szymura J.M. Phylogeography of the fire-bellied toads Bombina: independent Pleistocene histories inferred from mitochondrial genomes. Mol. Ecol. 2007, 16:2301-2316.
24. King R.A., Ferris C. Chloroplast DNA phylogeography of Alnus glutinosa (L.) Gaertn. Mol. Ecol. 1998, 7:1151-1161.
25. Librado P., Rozas J. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 2009, 25:1451-1452.
26. Lymberakis P., Poulakakis N. Three continents claiming an Archipelago: the evolution of Aegean's herpetofaunal diversity. Diversity 2010, 2:233-255.
27. Magri D. Patterns of post-glacial spread and the extent of glacial refugia of European beech (Fagus sylvatica). J. Biogeogr. 2008, 35:450-463.
28. Moritz C. Strategies to protect biological diversity and the evolutionary processes that sustain it. Syst. Biol. 2002, 51:238-254.
29. Mulcahy D.G., Mendelson J.R. Phylogeography and speciation of the morphologically variable, widespread species Bufo valliceps, based on molecular evidence from mtDNA. Mol. Phylogenet. Evol. 2000, 17:173-189.
30. Oliveira M.E., Paillette M., Rosa H.D., Crespo H.D. A natural hybrid between Hyla arborea and Hyla meridionalis detected by mating calls. [note that the taxon named "arborea" here is now H. molleri]. Amph. Rept. 1991, 12:15-20.
31. Recuero E., Iraola A., Rubio X., Machordom A., Garcia-Paris M. Mitochondrial differentiation and biogeography of Hyla meridionalis (Anura: Hylidae): an unusual phylogeographical pattern. J. Biogeogr. 2007, 34:1207-1219.
32. Recuero E., Canestrelli D., Vörös J., Szabo J.K., Poyarkov N.K., Arntzen J.W., Crnobrnja-Isailovic J., Kidov A.A., Cogalniceanu D., Caputo F.P., Nascetti G., Martinez-Solano I. Multilocus species tree analyses resolve the radiation of the widespread Bufo bufo species group (Anura, Bufonidae). Mol. Phylogen. Evol. 2012, 62:71-86.
33. Rissler L., Smith W.H. Mapping amphibian contact zones and phylogeographical break hotspots across the United States. Mol. Ecol. 2010, 19:5404-5416.
34. Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 2003, 19:1572-1574.
35. Sandel B., Arge L., Dalsgaard B., Davies B.G., Gaston K.J., Sutherland W.J., Svenning J.-C. The influence of late Quaternary climate-change velocity on species endemism. Science 2011, 334:660-664.
36. Schneider H. The distribution of Hyla arborea and H. savignyi on the south coast of Turkey. Zool. Midd. East 2001, 23:61-69.
37. Schneider H., Grosse W.-R. Hyla arborea (Linnaeus, 1758) - Europäischer Laubfrosch. Handbuch der Amphibien und Reptilien Europas, Froschlurche II (Handbook of the Amphibians and Reptiles of Europe. vol. 5 Anura II) 2009, vol. 5:413-498. AULA-Verlag Wiesbaden, (in German).
38. Smith S.A., Stephens P.R., Wiens J.J. Replicate patterns of species richness, historical biogeography and phylogeny in Holarctic tree frogs. Evolution 2005, 59:2433-2450.
39. Stöck M., Moritz C., Hickerson M., Frynta D., Dujsebayeva T., Eremchenko V., Macey J.R., Papenfuss T.J., Wake D.B. Evolution of mitochondrial relationships and biogeography of Palearctic green toads (Bufo viridis subgroup) with insights in their genomic plasticity. Mol. Phylogenet. Evol. 2006, 41:663-689.
40. Stöck M., Dubey S., Klütsch C., Litvinchuk S.N., Scheidt U., Perrin N. Mitochondrial and nuclear phylogeny of circum-Mediterranean tree frogs from the Hyla arborea group. Mol. Phylogenet. Evol. 2008, 49:1019-1024.
41. Stöck M., Roth P., Podloucky R., Grossenbacher, K., 2008b. Wechselkröten - unter Berücksichtigung von Bufo viridis virdis Laurenti, 1768; Bufo variabilis Pallas, 1769; Bufo boulengeri Lataste, 1879; Bufo balearicus Böttger, 1880 und Bufo siculus Stöck, Sicilia, Belfiore, Lo Brutto, Lo Valvo und Arculeo, 2008. In: Grossenbacher, K., (Ed.), Handbuch der Amphibien und Reptilien Europas. Froschlurche II (Handbook of the Amphibians and Reptiles of Europe. vol. 5 Anura II), vol. 5. AULA-Verlag Wiesbaden, pp. 413-498 (in German).
42. Teacher A.G.F., Garner T.W.J., Nichols R.A. European phylogeography of the common frog (Rana temporaria): routes of postglacial colonization into the British Isles, and evidence for an Irish glacial refugium. Heredity 2009, 102:490-496.
43. Verardi A., Canestrelli D., Nascetti G. Nuclear and mitochondrial patterns of introgression between the parapatric European treefrogs Hyla arborea and H. intermedia. Ann. Zool. Fenn. 2009, 46:247-258.
44. Wake D.B., Vredenburg V. Are we in the midst of the sixth mass extinction? A view from the world of amphibians. Proc. Nat. Acad. Sci. USA 2008, 105:11466-11473.
45. Wiens J.J., Fetzner J.W., Parkinson C.L., Reeder T.W. Hylid frog phylogeny and sampling strategies for speciose clades. Syst. Biol. 2005, 54:719-748.
46. Wiens J.J., Kuczynski C.A., Hua X., Moen D.S. An expanded phylogeny of treefrogs (Hylidae) based on nuclear and mitochondrial sequence data. Mol. Phylogenet. Evol. 2010, 55:871-882.