On computing maximum likelihood phylogeny using FPGA

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 3203, Issue , 2004, Pages 1188-

  Mak, Terrence S T ^a   Lam, K P ^a  

^a CHINESE UNIVERSITY OF HONG KONG   (Hong Kong)

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; COMPUTATION THEORY; DIGITAL ARITHMETIC; FIELD PROGRAMMABLE GATE ARRAYS (FPGA); GENETIC ALGORITHMS; HARDWARE-SOFTWARE CODESIGN; MAXIMUM LIKELIHOOD; OPTIMAL SYSTEMS; VIRUSES;

DATA TRANSMISSION RATES; FIXED-POINT ARCHITECTURES; HARDWARE AND SOFTWARE; MAXIMUM LIKELIHOOD APPROACHES; NEAR-OPTIMAL SOLUTIONS; PHYLOGENETIC TREE RECONSTRUCTION; PIPELINED IMPLEMENTATION; VIRUS IDENTIFICATION;

TREES (MATHEMATICS);

EID: 84864541324     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-30117-2_174     Document Type: Conference Paper

References (6)

1. Kishino H., et al.: Maximum Likelihood Inference of Protein Phylogeny and the Origin of Chloroplasts. J. Mol. Evol., 31:151-160, 1990
2. Felsenstein J.: Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol., 17:368-376, 1981
3. P. Lewis: A Genetic Algorithm for Maximum Likelihood Phylogeny Inference Using Nucleotide Sequence Data. Mol. Biol. Evol. 15(3):277-283, 1998
4. Mak S. T. and K. P. Lam: High Speed GAML-based Phylogenetic Tree Reconstruction Using HW/SW Codesign. IEEE Computer Society Bioinformatics Conference 2003, 2003
5. Mak S. T. and K. P. Lam: FPGA-based Computation Maximum Likelihood Phylogenetic Tree Evaluation. Accepted in Field-Programmable Logic and Applications conference, 2004
6. Mak S. T. and K. P. Lam: Embedded Computation of Maximum-Likelihood Phylogeny Inference Using Platform FPGA. Accepted in IEEE Computer Society Bioinformatics Conference 2004, 2004