Quantification of high-specificity cyclic diguanylate signaling

Proceedings of the National Academy of Sciences of the United States of America

Volumn 109, Issue 31, 2012, Pages 12746-12751

  Massie, Jonathan P ^a   Reynolds, Evan L ^a   Koestler, Benjamin J ^a   Cong, Jian Ping ^b   Agostoni, Marco ^c   Waters, Christopher M ^a  

^a Michigan State University ^*  (United States)

^b PRINCETON UNIVERSITY   (United States)

^c MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

Signaling specificity; Systems biology

Indexed keywords

CYCLIC DI GMP; CYCLIC GMP; UNCLASSIFIED DRUG;

APHA GENE; ARTICLE; BACTERIAL GENE; BIOFILM; CELL LEVEL; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; FLOW CYTOMETRY; GENE EXPRESSION; GENETIC TRANSCRIPTION; NONHUMAN; PHENOTYPIC VARIATION; PRIORITY JOURNAL; SIGNAL TRANSDUCTION; VIBRIO CHOLERAE;

BACTERIAL PROTEINS; BIOFILMS; CYCLIC GMP; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; PHOSPHORUS-OXYGEN LYASES; SECOND MESSENGER SYSTEMS; VIBRIO CHOLERAE;

VIBRIO CHOLERAE;

EID: 84864498015     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1115663109     Document Type: Article

References (38)

1. Jenal U, Dorman CJ (2009) Small molecule signaling. Curr Opin Microbiol 12:125-128.
2. Galperin MY (2004) Bacterial signal transduction network in a genomic perspective. Environ Microbiol 6:552-567.
3. Paul R, et al. (2004) Cell cycle-dependent dynamic localization of a bacterial response regulator with a novel di-guanylate cyclase output domain. Genes Dev 18:715-727. (Pubitemid 38489938)
4. Abel S, et al. (2011) Regulatory cohesion of cell cycle and cell differentiation through interlinked phosphorylation and second messenger networks. Mol Cell 43:550-560.
5. Christen M, et al. (2010) Asymmetrical distribution of the second messenger c-di-GMP upon bacterial cell division. Science 328:1295-1297.
6. Tuckerman JR, Gonzalez G, Gilles-Gonzalez MA (2011) Cyclic di-GMP activation of polynucleotide phosphorylase signal-dependent RNA processing. J Mol Biol 407: 633-639.
7. Steinberg SF, Brunton LL (2001) Compartmentation of G protein-coupled signaling pathways in cardiac myocytes. Annu Rev Pharmacol Toxicol 41:751-773. (Pubitemid 32385905)
8. Zaccolo M, Pozzan T (2002) Discrete microdomains with high concentration of cAMP in stimulated rat neonatal cardiac myocytes. Science 295:1711-1715. (Pubitemid 34202906)
9. Rich TC, et al. (2001) A uniform extracellular stimulus triggers distinct cAMP signals in different compartments of a simple cell. Proc Natl Acad Sci USA 98:13049-13054. (Pubitemid 33051315)
10. Davare MA, et al. (2001) A beta2 adrenergic receptor signaling complex assembled with the Ca2+ channel Cav1.2. Science 293:98-101. (Pubitemid 32625503)
11. Brunton LL, Hayes JS, Mayer SE (1981) Functional compartmentation of cyclic AMP and protein kinase in heart. Adv Cyclic Nucleotide Res 14:391-397.
12. Zaccolo M, et al. (2006) Restricted diffusion of a freely diffusible second messenger: Mechanisms underlying compartmentalized cAMP signalling. Biochem Soc Trans 34: 495-497. (Pubitemid 44230745)
13. Chen W, Levine H, Rappel WJ (2008) A mathematical analysis of second messenger compartmentalization. Phys Biol 5:046006.
14. Kulasakara H, et al. (2006) Analysis of Pseudomonas aeruginosa diguanylate cyclases and phosphodiesterases reveals a role for bis-(3′-5′)-cyclic-GMP in virulence. Proc Natl Acad Sci USA 103:2839-2844.
15. Merritt JH, et al. (2010) Specific control of Pseudomonas aeruginosa surface-associated behaviors by two c-di-GMP diguanylate cyclases. MBio 1:e00183-10.
16. Newell PD, Yoshioka S, Hvorecny KL, Monds RD, O'Toole GA (2011) A systematic analysis of diguanylate cyclases that promote biofilm formation by Pseudomonas fluorescens Pf0-1. J Bacteriol 193:4685-4698.
17. Kader A, Simm R, Gerstel U, Morr M, Römling U (2006) Hierarchical involvement of various GGDEF domain proteins in rdar morphotype development of Salmonella enterica serovar Typhimurium. Mol Microbiol 60:602-616.
18. Simm R, Fetherston JD, Kader A, Römling U, Perry RD (2005) Phenotypic convergence mediated by GGDEF-domain-containing proteins. J Bacteriol 187:6816-6823. (Pubitemid 41356255)
19. Solano C, et al. (2009) Genetic reductionist approach for dissecting individual roles of GGDEF proteins within the c-di-GMP signaling network in Salmonella. Proc Natl Acad Sci USA 106:7997-8002.
20. Waters CM, Lu W, Rabinowitz JD, Bassler BL (2008) Quorum sensing controls biofilm formation in Vibrio cholerae through modulation of cyclic di-GMP levels and repression of vpsT. J Bacteriol 190:2527-2536. (Pubitemid 351466348)
21. Hammer BK, Bassler BL (2003) Quorum sensing controls biofilm formation in Vibrio cholerae. Mol Microbiol 50:101-104.
22. Yildiz FH, Schoolnik GK (1999) Vibrio cholerae O1 El Tor: Identification of a gene cluster required for the rugose colony type, exopolysaccharide production, chlorine resistance, and biofilm formation. Proc Natl Acad Sci USA 96:4028-4033. (Pubitemid 29169030)
23. Ryan RP, Fouhy Y, Lucey JF, Dow JM (2006) Cyclic di-GMP signaling in bacteria: Recent advances and new puzzles. J Bacteriol 188:8327-8334. (Pubitemid 44894031)
24. Schleheck D, et al. (2009) Pseudomonas aeruginosa PAO1 preferentially grows as aggregates in liquid batch cultures and disperses upon starvation. PLoS ONE 4:e5513.
25. Güvener ZT, Harwood CS (2007) Subcellular location characteristics of the Pseudomonas aeruginosa GGDEF protein, WspR, indicate that it produces cyclic-di-GMP in response to growth on surfaces. Mol Microbiol 66:1459-1473. (Pubitemid 350179680)
26. Simm R, Morr M, Remminghorst U, Andersson M, Römling U (2009) Quantitative determination of cyclic diguanosine monophosphate concentrations in nucleotide extracts of bacteria by matrix-assisted laser desorption/ionization- time-of-flight mass spectrometry. Anal Biochem 386:53-58.
27. Ryjenkov DA, Tarutina M, Moskvin OV, Gomelsky M (2005) Cyclic diguanylate is a ubiquitous signaling molecule in bacteria: Insights into biochemistry of the GGDEF protein domain. J Bacteriol 187:1792-1798. (Pubitemid 40289381)
28. Srivastava D, Harris RC, Waters CM (2011) Integration of cyclic di-GMP and quorum sensing in the control of vpsT and aphA in Vibrio cholerae. J Bacteriol 193:6331-6341.
29. Krasteva PV, et al. (2010) Vibrio cholerae VpsT regulates matrix production and motility by directly sensing cyclic di-GMP. Science 327:866-868.
30. Beyhan S, Bilecen K, Salama SR, Casper-Lindley C, Yildiz FH (2007) Regulation of rugosity and biofilm formation in Vibrio cholerae: Comparison of VpsT and VpsR regulons and epistasis analysis of vpsT, vpsR, and hapR. J Bacteriol 189:388-402. (Pubitemid 46106371)
31. Kovacikova G, Lin W, Skorupski K (2003) The virulence activator AphA links quorum sensing to pathogenesis and physiology in Vibrio cholerae by repressing the expression of a penicillin amidase gene on the small chromosome. J Bacteriol 185: 4825-4836. (Pubitemid 36962290)
32. Rutherford ST, van Kessel JC, Shao Y, Bassler BL (2011) AphA and LuxR/HapR reciprocally control quorum sensing in vibrios. Genes Dev 25:397-408.
33. Lim B, Beyhan S, Meir J, Yildiz FH (2006) Cyclic-diGMP signal transduction systems in Vibrio cholerae: Modulation of rugosity and biofilm formation. Mol Microbiol 60: 331-348.
34. Ryan RP, et al. (2010) Cell-cell signal-dependent dynamic interactions between HDGYP and GGDEF domain proteins mediate virulence in Xanthomonas campestris. Proc Natl Acad Sci USA 107:5989-5994.
35. Weinhouse H, et al. (1997) c-di-GMP-binding protein, a new factor regulating cellulose synthesis in Acetobacter xylinum. FEBS Lett 416:207-211. (Pubitemid 27462790)
36. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY).
37. Sambanthamoorthy K, et al. (2011) Identification of a novel benzimidazole that inhibits bacterial biofilm formation in a broad-spectrum manner. Antimicrob Agents Chemother 55:4369-4378.
38. Box GEP, Cox DR (1964) An analysis of transformations. J R Stat Soc Ser B 26:211-252.