A novel association between two trypanosome-specific factors and the conserved l5-5S rRNA complex

PLoS ONE

Volumn 7, Issue 7, 2012, Pages

  Ciganda, Martin ^a   Prohaska, Kimberly ^a   Hellman, Kristina ^a   Williams, Noreen ^a  

^a UNIVERSITY AT BUFFALO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN L5; PROTEIN P34; PROTEIN P37; PROTOZOAL PROTEIN; RNA 5S; RNA BINDING PROTEIN; UNCLASSIFIED DRUG;

AMINO ACID SUBSTITUTION; ARTICLE; BINDING AFFINITY; BINDING SITE; BIOGENESIS; COMPUTER ANALYSIS; CONTROLLED STUDY; GENE MUTATION; IN VITRO STUDY; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN ANALYSIS; PROTEIN PROTEIN INTERACTION; PROTEIN RNA BINDING; PROTEIN STABILITY; RIBOSOME; RNA STRUCTURE; TRYPANOSOMA BRUCEI;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; BINDING SITES; CELL NUCLEUS; CONSERVED SEQUENCE; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; PROTOZOAN PROTEINS; RIBOSOMAL PROTEINS; RIBOSOMES; RNA, PROTOZOAN; RNA, RIBOSOMAL, 5S; RNA-BINDING PROTEINS; TRYPANOSOMA BRUCEI BRUCEI;

EUKARYOTA; MASTIGOPHORA (FLAGELLATES); PROTOZOA; TRYPANOSOMA BRUCEI;

EID: 84864488930     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0041398     Document Type: Article

References (40)

1. Nissen P, Hansen J, Ban N, Moore PB, Steitz TA, ((2000)) The structural basis of ribosome activity in peptide bond synthesis. Science 289: 920-930.
2. Ben-Shem A, Jenner L, Yusupova G, Yusupov M, ((2010)) Crystal structure of the eukaryotic ribosome. Science 330: 1203-1209.
3. Nazar RN, ((2004)) Ribosomal RNA processing and ribosome biogenesis in eukaryotes. IUBMB Life 56: 457-465.
4. Ciganda M, Williams N, ((2011)) Eukaryotic 5S rRNA biogenesis. Wiley Interdiscip Rev RNA 2: 523-533.
5. Luehrsen KR, Fox GE, ((1981)) Secondary structure of eukaryotic cytoplasmic 5S ribosomal RNA. Proc Natl Acad Sci U S A 78: 2150-2154.
6. Scripture JB, Huber PW, ((2011)) Binding site for Xenopus ribosomal protein L5 and accompanying structural changes in 5S rRNA. Biochemistry 50: 3827-3839.
7. Steitz JA, Berg C, Hendrick JP, La-Branche-Chabot H, Metspalu A, et al. ((1988)) A 5S rRNA/L5 complex is a precursor to ribosome assembly in mammalian cells. J Cell Biol 1988: 545-556.
8. Korepanov AP, Gongadze GM, Garber MB, Court DL, Bubunenko MG, ((2007)) Importance of the 5 S rRNA-binding ribosomal proteins for cell viability and translation in Escherichia coli. J Mol Biol 366: 1199-1208.
9. Deshmukh M, Tsay YF, Paulovich AG, Woolford JL Jr, ((1993)) Yeast ribosomal protein L1 is required for the stability of newly synthesized 5S rRNA and the assembly of 60S ribosomal subunits. Mol Cell Biol 13: 2835-2845.
10. Zhang J, Williams N, ((1997)) Purification, cloning, and expression of two closely related Trypanosoma brucei nucleic acid binding proteins. Mol Biochem Parasitol 87: 145-158.
11. Pitula J, Ruyechan WT, Williams N, ((2002)) Two novel RNA binding proteins from Trypanosoma brucei are associated with 5S rRNA. Biochem Biophys Res Commun 290: 569-576.
12. Barrett MP, Krishna S, ((2003)) etc ((2003)) The trypanosomiases. Lancet 362: 1469-1480.
13. Wormington WM, Brown DD, ((1983)) Onset of 5 S RNA gene regulation during Xenopus embryogenesis. Dev Biol 99: 248-257.
14. Picard B, Le Maire M, Wegnez M, Denis H, ((1980)) Biochemical Research on oogenesis. Composition of the 42-S storage particles of Xenopus laevis oocytes. Eur J Biochem 109: 359-368.
15. Allison LA, Romaniuk PJ, Bakken AH, ((1991)) RNA-protein interactions of stored 5S RNA with TFIIIA and ribosomal protein L5 during Xenopus oogenesis. Developmental Biology 144: 129-144.
16. Ciganda M, Williams N, ((2012)) Characterization of a novel association between two trypanosome-specific proteins and 5S rRNA. PLoS One 7: e30029.
17. Rout MaF, ((2001)) M ((2001)) Isolation and characterization of subnuclear compartments from Trypanosoma brucei: Identification of a major repetitive nuclear lamina component. Journal of Biological Chemistry 276: 38261-38271.
18. Gilboa L, Nohe A, Geissendorfer T, Sebald W, Henis YI, et al. ((2000)) Bone morphogenetic protein receptor complexes on the surface of live cells: a new oligomerization mode for serine/threonine kinase receptors. Mol Biol Cell 11: 1023-1035.
19. Prohaska K, Williams N, ((2009)) Assembly of the Trypanosoma brucei 60S ribosomal subunit nuclear export complex requires trypanosome-specific proteins P34 and P37. Eukaryot Cell 8: 77-87.
20. Scripture JB, Huber PW, ((1995)) Analysis of the binding of Xenopus ribosomal protein L5 to oocyte 5 S rRNA. The major determinants of recognition are located in helix III-loop C. J Biol Chem 270: 27358-27365.
21. Zimmern D, Butler PJG, ((1977)) The isolation of tobacco mosaic virus RNA fragments containing the origin of viral assembly. Cell 11: 455-462.
22. Wong L, Lohman TM, ((1993)) A double-filter method for nitrocellulose-filter binding: application to protein-nucleic acid interactions. Proc Natl Acad Sci U S A 90: 5428-5432.
23. Deshmukh M, Stark J, Yeh LC, Lee JC, Woolford JL Jr, ((1995)) Multiple regions of yeast ribosomal protein L1 are important for its interaction with 5 S rRNA and assembly into ribosomes. J Biol Chem 270: 30148-30156.
24. Pitula J, Park J, Parsons M, Ruyechan WT, Williams N, ((2002)) Two families of RNA binding proteins from Trypanosoma brucei associate in a direct protein-protein interaction. Mol Biochem Parasitol 122: 81-89.
25. Warner JR, McIntosh KB, ((2009)) How common are extraribosomal functions of ribosomal proteins? Mol Cell 34: 3-11.
26. Hellman K, Prohaska K, Williams N, ((2007)) Trypanosoma brucei RNA binding proteins p34 and p37 mediate NOPP44/46 cellular localization via the exportin 1 nuclear export pathway. Eukaryot Cell 6: 2206-2213.
27. Hellman KM, Ciganda M, Brown SV, Li J, Ruyechan W, et al. ((2007)) Two trypanosome-specific proteins are essential factors for 5S rRNA abundance and ribosomal assembly in Trypanosoma brucei. Eukaryot Cell 6: 1766-1772.
28. Yeh LC, Lee JC, ((1995)) Contributions of multiple basic amino acids in the C-terminal region of yeast ribosomal protein L1 to 5 S rRNA binding and 60 S ribosome stability. J Mol Biol 246: 295-307.
29. DiNitto JP, Huber PW, ((2001)) A role for aromatic amino acids in the binding of Xenopus ribosomal protein L5 to 5S rRNA. Biochemistry 40: 12645-12653.
30. DiNitto JP, Huber PW, ((2003)) Mutual induced fit binding of Xenopus ribosomal protein L5 to 5S rRNA. J Mol Biol 330: 979-992.
31. Zhang J, Ruyechan W, Williams N, ((1998)) Developmental regulation of two nuclear RNA binding proteins, p34 and p37, from Trypanosoma brucei. Mol Biochem Parasitol 92: 79-88.
32. Lin E, Lin SW, Lin A, ((2001)) The participation of 5S rRNA in the co-translational formation of a eukaryotic 5S ribonucleoprotein complex. Nucleic Acids Res 29: 2510-2516.
33. Michael WM, Dreyfuss G, ((1996)) Distinct domains in ribosomal protein L5 mediate 5 S rRNA binding and nucleolar localization. J Biol Chem 271: 11571-11574.
34. Claussen M, Rudt F, Pieler T, ((1999)) Functional modules in ribosomal protein L5 for ribonucleoprotein complex formation and nucleocytoplasmic transport. J Biol Chem 274: 33951-33958.
35. Yaguchi M, Rollin CF, Roy C, Nazar RN, ((1984)) The 5S RNA binding protein from yeast (Saccharomyces cerevisiae) ribosomes. An RNA binding sequence in the carboxyl-terminal region. Eur J Biochem 139: 451-457.
36. Moradi H, Simoff I, Bartish G, Nygard O, ((2008)) Functional features of the C-terminal region of yeast ribosomal protein L5. Mol Genet Genomics 280: 337-350.
37. Michaeli S, Agabian N, ((1990)) A Trypanosoma brucei small RNP particle containing the 5S rRNA. Mol Biochem Parasitol 41: 7-15.
38. Hellman KM, ((2006)) Characterization of the protein-protein interactions and RNA binding properties of p34 and p37 from Trypanosoma brucei: State University of New York at Buffalo. 164 p.
39. Pittman RH, Andrews MT, Setzer DR, ((1999)) A feedback loop coupling 5 S rRNA synthesis to accumulation of a ribosomal protein. J Biol Chem 274: 33198-33201.
40. Rosorius O, Fries B, Stauber RH, Hirschmann N, Bevec D, et al. ((2000)) Human ribosomal protein L5 contains defined nuclear localization and export signals. J Biol Chem 275: 12061-12068.