-
1
-
-
85042639894
-
Helix formation by guanylic acid
-
Gellert, M., Lipsett, M.N. and Davies, D.R. (1962) Helix formation by guanylic acid. Proc. Natl Acad. Sci. USA, 48, 2013-2018.
-
(1962)
Proc. Natl Acad. Sci. USA
, vol.48
, pp. 2013-2018
-
-
Gellert, M.1
Lipsett, M.N.2
Davies, D.R.3
-
2
-
-
1042268168
-
G-quartets 40 years later: From 5′-GMP to molecular biology and supramolecular chemistry
-
Davis, J.T. (2004) G-quartets 40 years later: from 5′-GMP to molecular biology and supramolecular chemistry. Angew Chem. Int. Ed. Engl., 43, 668-698.
-
(2004)
Angew Chem. Int. Ed. Engl.
, vol.43
, pp. 668-698
-
-
Davis, J.T.1
-
3
-
-
20144364292
-
Prevalence of quadruplexes in the human genome
-
Huppert, J.L. and Balasubramanian, S. (2005) Prevalence of quadruplexes in the human genome. Nucleic Acids Res., 33, 2908-2916.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2908-2916
-
-
Huppert, J.L.1
Balasubramanian, S.2
-
4
-
-
33751020853
-
Quadruplex DNA: Sequence, topology and structure
-
Burge, S., Parkinson, G.N., Hazel, P., Todd, A.K. and Neidle, S. (2006) Quadruplex DNA: sequence, topology and structure. Nucleic Acids Res., 34, 5402-5415.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 5402-5415
-
-
Burge, S.1
Parkinson, G.N.2
Hazel, P.3
Todd, A.K.4
Neidle, S.5
-
5
-
-
68549136741
-
G-quadruplex structures: In vivo evidence and function
-
Lipps, H.J. and Rhodes, D. (2009) G-quadruplex structures: in vivo evidence and function. Trends Cell Biol., 19, 414-422.
-
(2009)
Trends Cell Biol.
, vol.19
, pp. 414-422
-
-
Lipps, H.J.1
Rhodes, D.2
-
6
-
-
77955834769
-
Structure, location and interactions of G-quadruplexes
-
Huppert, J.L. (2010) Structure, location and interactions of G-quadruplexes. Febs J., 277, 3452-3458.
-
(2010)
Febs J.
, vol.277
, pp. 3452-3458
-
-
Huppert, J.L.1
-
7
-
-
67649833785
-
G-quadruplex nucleic acids as therapeutic targets
-
Balasubramanian, S. and Neidle, S. (2009) G-quadruplex nucleic acids as therapeutic targets. Curr. Opin. Chem. Biol., 13, 345-353.
-
(2009)
Curr. Opin. Chem. Biol.
, vol.13
, pp. 345-353
-
-
Balasubramanian, S.1
Neidle, S.2
-
8
-
-
77955791569
-
G-quadruplex nucleic acids and human disease
-
Wu, Y. and Brosh, R.M. Jr (2010) G-quadruplex nucleic acids and human disease. Febs J., 277, 3470-3488.
-
(2010)
Febs J.
, vol.277
, pp. 3470-3488
-
-
Wu, Y.1
Brosh Jr., R.M.2
-
9
-
-
81455140677
-
The application of DNA and RNA G-quadruplexes to therapeutic medicines
-
Collie, G.W. and Parkinson, G.N. (2011) The application of DNA and RNA G-quadruplexes to therapeutic medicines. Chem. Soc. Rev., 40, 5867-5892.
-
(2011)
Chem. Soc. Rev.
, vol.40
, pp. 5867-5892
-
-
Collie, G.W.1
Parkinson, G.N.2
-
10
-
-
80052178586
-
Research progress of RNA quadruplex
-
Ji, X., Sun, H., Zhou, H., Xiang, J., Tang, Y. and Zhao, C. (2011) Research progress of RNA quadruplex. Nucleic Acid Ther., 21, 185-200.
-
(2011)
Nucleic Acid Ther.
, vol.21
, pp. 185-200
-
-
Ji, X.1
Sun, H.2
Zhou, H.3
Xiang, J.4
Tang, Y.5
Zhao, C.6
-
12
-
-
84857418722
-
The formation and stabilization of a novel G-quadruplex in the 5′-flanking region of the relaxin gene
-
Lin, S., Gu, H., Xu, M., Cui, X., Zhang, Y., Gao, W. and Yuan, G. (2012) The formation and stabilization of a novel G-quadruplex in the 5′-flanking region of the relaxin gene. PLoS One, 7, e31201.
-
(2012)
PLoS One
, vol.7
-
-
Lin, S.1
Gu, H.2
Xu, M.3
Cui, X.4
Zhang, Y.5
Gao, W.6
Yuan, G.7
-
13
-
-
34447541999
-
RNA quadruplex-based modulation of gene expression
-
Wieland, M. and Hartig, J.S. (2007) RNA quadruplex-based modulation of gene expression. Chem. Biol., 14, 757-763.
-
(2007)
Chem. Biol.
, vol.14
, pp. 757-763
-
-
Wieland, M.1
Hartig, J.S.2
-
14
-
-
13744249293
-
Kinetics of tetramolecular quadruplexes
-
Mergny, J.L., De Cian, A., Ghelab, A., Sacca, B. and Lacroix, L. (2005) Kinetics of tetramolecular quadruplexes. Nucleic Acids Res., 33, 81-94.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 81-94
-
-
Mergny, J.L.1
De Cian, A.2
Ghelab, A.3
Sacca, B.4
Lacroix, L.5
-
15
-
-
69949186768
-
A comparison of DNA and RNA quadruplex structures and stabilities
-
Joachimi, A., Benz, A. and Hartig, J.S. (2009) A comparison of DNA and RNA quadruplex structures and stabilities. Bioorg. Med. Chem., 17, 6811-6815.
-
(2009)
Bioorg. Med. Chem.
, vol.17
, pp. 6811-6815
-
-
Joachimi, A.1
Benz, A.2
Hartig, J.S.3
-
16
-
-
80051739988
-
A sequence-independent analysis of the loop length dependence of intramolecular RNA G-quadruplex stability and topology
-
Zhang, A.Y., Bugaut, A. and Balasubramanian, S. (2011) A sequence-independent analysis of the loop length dependence of intramolecular RNA G-quadruplex stability and topology. Biochemistry, 50, 7251-7258.
-
(2011)
Biochemistry
, vol.50
, pp. 7251-7258
-
-
Zhang, A.Y.1
Bugaut, A.2
Balasubramanian, S.3
-
17
-
-
38049030699
-
Human telomere, oncogenic promoter and 5′-utr G-quadruplexes: Diverse higher order DNA and RNA targets for cancer therapeutics
-
Patel, D.J., Phan, A.T. and Kuryavyi, V. (2007) Human telomere, oncogenic promoter and 5′-UTR G-quadruplexes: diverse higher order DNA and RNA targets for cancer therapeutics. Nucleic Acids Res., 35, 7429-7455.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 7429-7455
-
-
Patel, D.J.1
Phan, A.T.2
Kuryavyi, V.3
-
18
-
-
84862229118
-
5′-Utr RNA G-quadruplexes: Translation regulation and targeting
-
Bugaut, A. and Balasubramanian, S. (2012) 5′-UTR RNA G-quadruplexes: translation regulation and targeting. Nucleic Acids Res., 40, 4727-4741.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 4727-4741
-
-
Bugaut, A.1
Balasubramanian, S.2
-
19
-
-
0141925805
-
A single internal ribosome entry site containing a G quartet RNA structure drives fibroblast growth factor 2 gene expression at four alternative translation initiation codons
-
Bonnal, S., Schaeffer, C., Creancier, L., Clamens, S., Moine, H., Prats, A.C. and Vagner, S. (2003) A single internal ribosome entry site containing a G quartet RNA structure drives fibroblast growth factor 2 gene expression at four alternative translation initiation codons. J. Biol. Chem., 278, 39330-39336.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 39330-39336
-
-
Bonnal, S.1
Schaeffer, C.2
Creancier, L.3
Clamens, S.4
Moine, H.5
Prats, A.C.6
Vagner, S.7
-
20
-
-
78650271083
-
An RNA G-quadruplex is essential for cap-independent translation initiation in human VEGF IRES
-
Morris, M.J., Negishi, Y., Pazsint, C., Schonhoft, J.D. and Basu, S. (2010) An RNA G-quadruplex is essential for cap-independent translation initiation in human VEGF IRES. J. Am. Chem. Soc., 132, 17831-17839.
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 17831-17839
-
-
Morris, M.J.1
Negishi, Y.2
Pazsint, C.3
Schonhoft, J.D.4
Basu, S.5
-
21
-
-
33947310727
-
An RNA G-quadruplex in the 5′ UTR of the NRAS proto-oncogene modulates translation
-
Kumari, S., Bugaut, A., Huppert, J.L. and Balasubramanian, S. (2007) An RNA G-quadruplex in the 5′ UTR of the NRAS proto-oncogene modulates translation. Nat. Chem. Biol., 3, 218-221.
-
(2007)
Nat. Chem. Biol.
, vol.3
, pp. 218-221
-
-
Kumari, S.1
Bugaut, A.2
Huppert, J.L.3
Balasubramanian, S.4
-
22
-
-
84863116846
-
Yin yang 1 contains G-quadruplex structures in its promoter and 5′-utr and its expression is modulated by G4 resolvase 1
-
Huang, W., Smaldino, P.J., Zhang, Q., Miller, L.D., Cao, P., Stadelman, K., Wan, M., Giri, B., Lei, M., Nagamine, Y. et al. (2011) Yin Yang 1 contains G-quadruplex structures in its promoter and 5′-UTR and its expression is modulated by G4 resolvase 1. Nucleic Acids Res., 40, 1033-1049.
-
(2011)
Nucleic Acids Res.
, vol.40
, pp. 1033-1049
-
-
Huang, W.1
Smaldino, P.J.2
Zhang, Q.3
Miller, L.D.4
Cao, P.5
Stadelman, K.6
Wan, M.7
Giri, B.8
Lei, M.9
Nagamine, Y.10
-
23
-
-
84455173130
-
Translational repression of the disintegrin and metalloprotease adam10 by a stable G-quadruplex secondary structure in its 5′-untranslated region
-
Lammich, S., Kamp, F., Wagner, J., Nuscher, B., Zilow, S., Ludwig, A.K., Willem, M. and Haass, C. (2011) Translational repression of the disintegrin and metalloprotease ADAM10 by a stable G-quadruplex secondary structure in its 5′-untranslated region. J. Biol. Chem., 286, 45063-45072.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 45063-45072
-
-
Lammich, S.1
Kamp, F.2
Wagner, J.3
Nuscher, B.4
Zilow, S.5
Ludwig, A.K.6
Willem, M.7
Haass, C.8
-
24
-
-
84857138146
-
DNA polymorphisms of the kiss1 3′ untranslated region interfere with the folding of a G-rich sequence into G-quadruplex
-
Huijbregts, L., Roze, C., Bonafe, G., Houang, M., Bouc, Y.L., Carel, J.C., Leger, J., Alberti, P. and Roux, N.D. (2011) DNA polymorphisms of the KiSS1 3′ untranslated region interfere with the folding of a G-rich sequence into G-quadruplex. Mol. Cell Endocrinol., 351, 239-248.
-
(2011)
Mol. Cell Endocrinol.
, vol.351
, pp. 239-248
-
-
Huijbregts, L.1
Roze, C.2
Bonafe, G.3
Houang, M.4
Bouc, Y.L.5
Carel, J.C.6
Leger, J.7
Alberti, P.8
Roux, N.D.9
-
25
-
-
50849092487
-
The G-quartet containing FMRP binding site in FMR1 mRNA is a potent exonic splicing enhancer
-
Didiot, M.C., Tian, Z., Schaeffer, C., Subramanian, M., Mandel, J.L. and Moine, H. (2008) The G-quartet containing FMRP binding site in FMR1 mRNA is a potent exonic splicing enhancer. Nucleic Acids Res., 36, 4902-4912.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 4902-4912
-
-
Didiot, M.C.1
Tian, Z.2
Schaeffer, C.3
Subramanian, M.4
Mandel, J.L.5
Moine, H.6
-
26
-
-
0035900649
-
Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function
-
Darnell, J.C., Jensen, K.B., Jin, P., Brown, V., Warren, S.T. and Darnell, R.B. (2001) Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function. Cell, 107, 489-499.
-
(2001)
Cell
, vol.107
, pp. 489-499
-
-
Darnell, J.C.1
Jensen, K.B.2
Jin, P.3
Brown, V.4
Warren, S.T.5
Darnell, R.B.6
-
27
-
-
20144365993
-
FMRP interferes with the rac1 pathway and controls actin cytoskeleton dynamics in murine fibroblasts
-
Castets, M., Schaeffer, C., Bechara, E., Schenck, A., Khandjian, E.W., Luche, S., Moine, H., Rabilloud, T., Mandel, J.L. and Bardoni, B. (2005) FMRP interferes with the Rac1 pathway and controls actin cytoskeleton dynamics in murine fibroblasts. Hum. Mol. Genet., 14, 835-844.
-
(2005)
Hum. Mol. Genet.
, vol.14
, pp. 835-844
-
-
Castets, M.1
Schaeffer, C.2
Bechara, E.3
Schenck, A.4
Khandjian, E.W.5
Luche, S.6
Moine, H.7
Rabilloud, T.8
Mandel, J.L.9
Bardoni, B.10
-
28
-
-
80455168361
-
Enhanced translation by nucleolin via G-rich elements in coding and non-coding regions of target mRNAs
-
Abdelmohsen, K., Tominaga, K., Lee, E.K., Srikantan, S., Kang, M.J., Kim, M.M., Selimyan, R., Martindale, J.L., Yang, X., Carrier, F. et al. (2011) Enhanced translation by Nucleolin via G-rich elements in coding and non-coding regions of target mRNAs. Nucleic Acids Res., 39, 8513-8530.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 8513-8530
-
-
Abdelmohsen, K.1
Tominaga, K.2
Lee, E.K.3
Srikantan, S.4
Kang, M.J.5
Kim, M.M.6
Selimyan, R.7
Martindale, J.L.8
Yang, X.9
Carrier, F.10
-
29
-
-
78149338276
-
Distinct functions of maternal and somatic Pat1 protein paralogs
-
Marnef, A., Maldonado, M., Bugaut, A., Balasubramanian, S., Kress, M., Weil, D. and Standart, N. (2010) Distinct functions of maternal and somatic Pat1 protein paralogs. RNA, 16, 2094-2107.
-
(2010)
RNA
, vol.16
, pp. 2094-2107
-
-
Marnef, A.1
Maldonado, M.2
Bugaut, A.3
Balasubramanian, S.4
Kress, M.5
Weil, D.6
Standart, N.7
-
30
-
-
0031030491
-
A mouse cytoplasmic exoribonuclease (mXRN1p) with preference for G4 tetraplex substrates
-
Bashkirov, V.I., Scherthan, H., Solinger, J.A., Buerstedde, J.M. and Heyer, W.D. (1997) A mouse cytoplasmic exoribonuclease (mXRN1p) with preference for G4 tetraplex substrates. J. Cell Biol., 136, 761-773.
-
(1997)
J. Cell Biol.
, vol.136
, pp. 761-773
-
-
Bashkirov, V.I.1
Scherthan, H.2
Solinger, J.A.3
Buerstedde, J.M.4
Heyer, W.D.5
-
31
-
-
78049439594
-
Role of the amino terminal rhau-specific motif in the recognition and resolution of guanine quadruplex-rna by the deah-box RNA helicase RHAU
-
Lattmann, S., Giri, B., Vaughn, J.P., Akman, S.A. and Nagamine, Y. (2010) Role of the amino terminal RHAU-specific motif in the recognition and resolution of guanine quadruplex-RNA by the DEAH-box RNA helicase RHAU. Nucleic Acids Res., 38, 6219-6233.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 6219-6233
-
-
Lattmann, S.1
Giri, B.2
Vaughn, J.P.3
Akman, S.A.4
Nagamine, Y.5
-
32
-
-
79957813857
-
Human DHX9 helicase preferentially unwinds rna-containing displacement loops (R-loops) and G-quadruplexes
-
Chakraborty, P. and Grosse, F. (2011) Human DHX9 helicase preferentially unwinds RNA-containing displacement loops (R-loops) and G-quadruplexes. DNA Repair, 10, 654-665.
-
(2011)
DNA Repair
, vol.10
, pp. 654-665
-
-
Chakraborty, P.1
Grosse, F.2
-
33
-
-
82255181578
-
The deah-box RNA helicase RHAU binds an intramolecular RNA G-quadruplex in TERC and associates with telomerase holoenzyme
-
Lattmann, S., Stadler, M.B., Vaughn, J.P., Akman, S.A. and Nagamine, Y. (2011) The DEAH-box RNA helicase RHAU binds an intramolecular RNA G-quadruplex in TERC and associates with telomerase holoenzyme. Nucleic Acids Res., 39, 9390-9404.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 9390-9404
-
-
Lattmann, S.1
Stadler, M.B.2
Vaughn, J.P.3
Akman, S.A.4
Nagamine, Y.5
-
34
-
-
20144369806
-
Highly prevalent putative quadruplex sequence motifs in human DNA
-
Todd, A.K., Johnston, M. and Neidle, S. (2005) Highly prevalent putative quadruplex sequence motifs in human DNA. Nucleic Acids Res., 33, 2901-2907.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2901-2907
-
-
Todd, A.K.1
Johnston, M.2
Neidle, S.3
-
35
-
-
33846928449
-
G-quadruplexes in promoters throughout the human genome
-
Huppert, J.L. and Balasubramanian, S. (2007) G-quadruplexes in promoters throughout the human genome. Nucleic Acids Res., 35, 406-413.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 406-413
-
-
Huppert, J.L.1
Balasubramanian, S.2
-
36
-
-
47649101029
-
Hunting G-quadruplexes
-
Huppert, J.L. (2008) Hunting G-quadruplexes. Biochimie, 90, 1140-1148.
-
(2008)
Biochimie
, vol.90
, pp. 1140-1148
-
-
Huppert, J.L.1
-
37
-
-
52449093394
-
Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species
-
Verma, A., Halder, K., Halder, R., Yadav, V.K., Rawal, P., Thakur, R.K., Mohd, F., Sharma, A. and Chowdhury, S. (2008) Genome-wide computational and expression analyses reveal G-quadruplex DNA motifs as conserved cis-regulatory elements in human and related species. J. Med. Chem., 51, 5641-5649.
-
(2008)
J. Med. Chem.
, vol.51
, pp. 5641-5649
-
-
Verma, A.1
Halder, K.2
Halder, R.3
Yadav, V.K.4
Rawal, P.5
Thakur, R.K.6
Mohd, F.7
Sharma, A.8
Chowdhury, S.9
-
38
-
-
38549087401
-
GRSDB2 and GRS-UTRdb: Databases of quadruplex forming G-rich sequences in pre-mRNAs and mRNAs
-
Kikin, O., Zappala, Z., D'Antonio, L. and Bagga, P.S. (2008) GRSDB2 and GRS-UTRdb: databases of quadruplex forming G-rich sequences in pre-mRNAs and mRNAs. Nucleic Acids Res., 36, D141-148.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Kikin, O.1
Zappala, Z.2
D'Antonio, L.3
Bagga, P.S.4
-
40
-
-
33747860882
-
QGRS mapper: A web-based server for predicting G-quadruplexes in nucleotide sequences
-
Kikin, O., D'Antonio, L. and Bagga, P.S. (2006) QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences. Nucleic Acids Res., 34, W676-W682.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Kikin, O.1
D'Antonio, L.2
Bagga, P.S.3
-
41
-
-
73349103817
-
Predictable suppression of gene expression by 5′-UTR-based RNA quadruplexes
-
Halder, K., Wieland, M. and Hartig, J.S. (2009) Predictable suppression of gene expression by 5′-UTR-based RNA quadruplexes. Nucleic Acids Res., 37, 6811-6817.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 6811-6817
-
-
Halder, K.1
Wieland, M.2
Hartig, J.S.3
-
42
-
-
0037335613
-
Downstream elements of mammalian pre-mRNA polyadenylation signals: Primary, secondary and higher-order structures
-
Zarudnaya, M.I., Kolomiets, I.M., Potyahaylo, A.L. and Hovorun, D.M. (2003) Downstream elements of mammalian pre-mRNA polyadenylation signals: primary, secondary and higher-order structures. Nucleic Acids Res., 31, 1375-1386.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 1375-1386
-
-
Zarudnaya, M.I.1
Kolomiets, I.M.2
Potyahaylo, A.L.3
Hovorun, D.M.4
-
43
-
-
23344443944
-
Unfolding of DNA quadruplexes induced by HIV-1 nucleocapsid protein
-
Kankia, B.I., Barany, G. and Musier-Forsyth, K. (2005) Unfolding of DNA quadruplexes induced by HIV-1 nucleocapsid protein. Nucleic Acids Res., 33, 4395-4403.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 4395-4403
-
-
Kankia, B.I.1
Barany, G.2
Musier-Forsyth, K.3
-
44
-
-
0020484488
-
An improved algorithm for matching biological sequences
-
Gotoh, O. (1982) An improved algorithm for matching biological sequences. J. Mol. Biol., 162, 705-708.
-
(1982)
J. Mol. Biol.
, vol.162
, pp. 705-708
-
-
Gotoh, O.1
-
45
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman, S.B. and Wunsch, C.D. (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol., 48, 443-453.
-
(1970)
J. Mol. Biol.
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
46
-
-
51749088608
-
Biojava: An open-source framework for bioinformatics
-
Holland, R.C., Down, T.A., Pocock, M., Prlic, A., Huen, D., James, K., Foisy, S., Drager, A., Yates, A., Heuer, M. et al. (2008) Biojava: an open-source framework for bioinformatics. Bioinformatics, 24, 2096-2097.
-
(2008)
Bioinformatics
, vol.24
, pp. 2096-2097
-
-
Holland, R.C.1
Down, T.A.2
Pocock, M.3
Prlic, A.4
Huen, D.5
James, K.6
Foisy, S.7
Drager, A.8
Yates, A.9
Heuer, M.10
-
47
-
-
45749139174
-
Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif
-
Arora, A., Dutkiewicz, M., Scaria, V., Hariharan, M., Maiti, S. and Kurreck, J. (2008) Inhibition of translation in living eukaryotic cells by an RNA G-quadruplex motif. RNA, 14, 1290-1296.
-
(2008)
RNA
, vol.14
, pp. 1290-1296
-
-
Arora, A.1
Dutkiewicz, M.2
Scaria, V.3
Hariharan, M.4
Maiti, S.5
Kurreck, J.6
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