Complete genome sequences of seven carlavirus and potyvirus isolates from Narcissus and Hippeastrum plants in Australia, and proposals to clarify their naming

Archives of Virology

Volumn 157, Issue 8, 2012, Pages 1471-1480

  Wylie, Stephen J ^a   Jones, Michael G K ^a  

^a MURDOCH UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ARTICLE; AUSTRALIA; CARLAVIRUS; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; LILIACEAE; MOLECULAR GENETICS; NARCISSUS; NOMENCLATURE; NUCLEOTIDE SEQUENCE; PLANT DISEASE; POTYVIRUS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; VIROLOGY; VIRUS GENOME;

AUSTRALIA; BASE SEQUENCE; CARLAVIRUS; GENOME, VIRAL; LILIACEAE; MOLECULAR SEQUENCE DATA; NARCISSUS; PLANT DISEASES; POTYVIRUS; RNA, VIRAL; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, RNA; TERMINOLOGY AS TOPIC;

CARLAVIRUS; HIPPEASTRUM; NARCISSUS; NARCISSUS YELLOW STRIPE VIRUS; NERINE; POTYVIRUS; VALLOTA SPECIOSA;

EID: 84864470326     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-012-1319-6     Document Type: Article

References (20)

1. Adams MJ, Antinow JF, Bar-Joseph M, Brunt AA, Candresse T, Foster GD, Martelli GP, Milne RG, Fauquet CM (2004) The new plant family Flexiviridae and assessment of molecular criteria for species demarcation. Arch Virol 149: 1045-1060.
2. Adams MJ, Antoniw JF, Fauquet CM (2005) Molecular criteria for genus and species discrimination within the family Potyviridae. Arch Virol 150: 459-479.
3. Alexandre MAV, Duarte LML, Rivas EB, Cilli A, Harakava R, Galleti SR, Kitajima EW (2011) Hippeastrum mosaic virus diagnosed in hippeastrum and eucharis in Brazil. J Plant Pathol 93: 643-649.
4. Brunt AA, Atkey PT (1967) Rapid detection of narcissus yellow stripe and two other filamentous viruses in crude negatively stained narcissus sap. Rep Glasshouse Res Inst 1966: 155-159.
5. Brunt AA (1995) Narcissus. In: Loebenstein G, Lawson RH, Brunt AA (eds) Virus and virus-like diseases of bulb and flower crops. Wiley, Chichester, pp 322-334.
6. Chen J, Chen JP, Langeveld SA, Derks AFLM, Adams MJ (2003) Molecular characterization of carla- and potyviruses from narcissus in China. J Phytopathol 151: 1-4.
7. Chen J, Shi YH, Lu YW, Adams MJ, Chen JP (2006) Narcissus symptomless virus: a new carlavirus of daffodils. Arch Virol 151: 2261-2267.
8. Drummond AJ, Ashton B, Buxton S, Cheung M, Cooper A, Duran C, Field M, Heled J, Kearse M, Markowitz S, Moir R, Stones-Havas S, Sturrock S, Thierer T, Wilson A (2011) Geneious Pro v5. 5. 6. http://www. geneious. com.
9. Hakkaart FA (1972) Virusziekten van Nerine. Jversl Inst Plziektenk Onderz, Wageningen 1971: 105-106.
10. Langeveld SA, Derks AFLM, Konicheva V, Muñoz D, Zhin-nan C, Denkova ST, Lemmers MEC, Boonekamp PM (1997) Molecular identification of potyviruses in Dutch stocks of Narcissus. Acta Hort 430: 641-648.
11. Maat DZ, Huttinga H, Hakkaart FA (1978) Nerine latent virus, some properties and serological detectability in Nerine bowdenii. Neth J Plant Pathol 84: 47-59.
12. Morschel JR (1966). Recorded plant diseases in and outside Australia. Part 4: Forest trees and Ornamental Plants. Commonwealth Department of Health Division of Plant Quarantine, Canberra, 79 p.
13. Pearson MN, Cohen D, Cowell SJ, Jones D, Blouin A, Lebas BSM, Shiller JB, Clover GRC (2009) A survey of viruses of flower bulbs in New Zealand. Australas Plant Pathol 38: 305-309.
14. Raj SK, Snehi SK, Kumar S, Khan MS (2009) First molecular detection and identification of a potyvirus associated with severe mosaic disease of amaryllis (Hippeastrum hybridum Hort.) in India. Australas Plant Dis Note 4: 50-53.
15. Roossinck MJ, Saha P, Wiley GB, Quan J, White JD, Lai H, Chavarría F, Shen G, Roe BA (2010) Ecogenomics: using massively parallel pyrosequencing to understand virus ecology. Mol Ecol 19(Suppl 1): 81-88.
16. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. doi: 10. 1093/molbev/msr121.
17. Valli A, Lo′pez-Moya JJ, Garci{dotless}′a JA (2007) Recombination and gene duplication in the evolutionary diversification of P1 proteins in the family Potyviridae. J Gen Virol 88: 1016-1028.
18. Ward LI, Veerakone S, Tang J, Clover GRG (2009) First report of narcissus degeneration virus, narcissus late season yellows virus, and narcissus symptomless virus on Narcissus in New Zealand. Plant Dis 93: 964.
19. Wylie SJ, Nouri S, Coutts BA, Jones MGK (2010) Narcissus late season yellows virus and Vallota speciosa virus found infecting domestic and wild populations of Narcissus species in Australia. Arch Virol 155: 1171-1174.
20. Wylie SJ, Luo H, Li H, Jones MGK (2012) Multiple polyadenylated RNA viruses detected in pooled cultivated and wild plant samples. Arch Virol 157: 271-284.